Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Reverse (-)

35068833 .. 35073764

Gene Structure 4932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1290300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGTCGTCAACGCTACTGGAGCAGACACGTGCCGCTCACGAGGAGGTGGAGCGGCTGGAGCGGCTGATAGTGAAGGACTTCATGAACGAGCCGCCGTCCAGCAAGGACCGTTTGTACCAGGGCCACCGCGTCCGCCAAATGATCGACACCATCACCTCCACCACCGAAAAACTGATTGAGATCTATGAAGATAAAGATAATGCGAGGAAGGACGAGATTGCGGCCCTCGGAGGCCAGACTGCCACTGGCACCAACGTTTTCAGCGCATTTTATGATCGATTGAAAGAGATTCGTGAGTATCACCGAAAGCACCCAGTTGCTCGTGTTGTTGATGCTAATGAGGAAGAAGAAGCACTGCTAAAGGAGGAACCTCAAATCGAGTTCAGTGGAGAGGAAGCTTTTGGAAGATACCTTGACTTGCATGAACTATACAACCAGTATATTAATTCCAAATTTGGAGAACCTATTGAGTACTCTGCTTACCTTGATGCTTTTTCACAACCACAAAAGGTTCCACACAAGCTGAAGTCGTCAAGGCAGTACAAGGAATATATGGAAAATCTACTTGCATACCTGATATATTTTTTCCAGAGGACAGAGCCCTTGCAAGATCTTGACAGAATATTTTTGAAGGTTGAAACCGAATTTGAAGAGCAATGGGCAGATGGCAAGGTAAAAGGATGGGAAAATGAGAAGCAAGAAAATGGGCATGTTCAAGATCAACTTACTATGATTGATCTTGATTATTATAGCACGGTGGAAGAACTGATGGAAGTGGGCCCTGAAAAGCTAAAGGAGGCACTAGCTTCATTAGGACTGAAGACGGGTGGTACTGTTCAGCAGCGTGCAGAGAGGCTTTTCCTTACAAAGGACACACCTCTGGAGAAGTTGGACAAGAAACATTTTGCCAAAGGTTCGCGTGGTGCAGAACAGAATGGGGCTGCTGCAGCTCCACAACAAGTTGACAATTTAAAAGAAATTGCTTTATTGGAGGCCAAAACGAAAAAATTATGCGACTTACTGACTGAGGCTATTGAAAGAACAAAAGACAACATCATGAAGAAACAGGCTTTGACATATGAAGAAATTGAAGCAGAACGTGAAGAGGAAGAGACACAGGCCGATACTGAAAGTGATGATGATGAACAGCAGATTTACAATCCACTGAAATTGCCAATGGGTTGGGATGGGAAGCCCATTCCCTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGCGAGATATGCGGGAATTACAGTTACTGGGGGCGTAGAGCTTTTGAGAGACATTTTAAGGAATGGCGCCATCAGCACGGTATGCGTTGCCTAGGTATACCAAACACGAAGAACTTCAACGAGATCACATCAATAGAGGAAGCTAAAGAACTGTGGAAGAGGATACAAGCACGGCAAGGTGTAAACAAATGGCGTCCGGATCTTGAAGAAGAGTATGAAGACAGAGAAGGTAACATATACAATAAGAAGACATATACTGATCTGCAGCGACAGGGGCTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

510

Amino Acids

59.7

Weight (kDa)

5.12

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3a60_bindingd	PF12108	80 - 105	4.5e-12	Splicing factor SF3a60 binding domain
SF3A3	PF16837	127 - 174	1.6e-17	Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
SDE2_2C	PF13297	223 - 304	1.4e-29	Replication stress response SDE2 C-terminal
SF3a60_Prp9_C	PF11931	390 - 509	5.3e-57	SF3a60/Prp9 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	248, 1311
AccBSI	CCGCTC	3 cut(s)	35, 52, 61
AccI	GTMKAC	1 cut(s)	1342
AccII	CGCG	2 cut(s)	129, 919
AccIII	TCCGGA	1 cut(s)	1441
AciI	CCGC	8 cut(s)	33, 52, 61, 92, 127, 133, 221, 1257
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	1 cut(s)	1452
AcsI	RAATTY	3 cut(s)	452, 644, 1238
AcuI	CTGAAG	2 cut(s)	545, 839
AcvI	CACGTG	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	1312, 1438
AfaI	GTAC	4 cut(s)	116, 473, 542, 832
AfiI	CCNNNNNNNGG	1 cut(s)	868
AflIII	ACRYGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	8 cut(s)	398, 523, 790, 806, 950, 1219, 1286, 1388
AluI	AGCT	8 cut(s)	398, 523, 790, 806, 950, 1219, 1286, 1388
Alw26I	GTCTC	2 cut(s)	1106, 1288
AlwI	GGATC	1 cut(s)	1452
AlwNI	CAGNNNCTG	2 cut(s)	1272, 1522
Aor13HI	TCCGGA	1 cut(s)	1441
AoxI	GGCC	6 cut(s)	121, 222, 232, 778, 993, 1119
ApaI	GGGCCC	1 cut(s)	782
ApeKI	GCWGC	5 cut(s)	841, 941, 944, 947, 1510
ApoI	RAATTY	3 cut(s)	452, 644, 1238
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	2 cut(s)	77, 1358
AspA2I	CCTAGG	1 cut(s)	1336
AspLEI	GCGC	2 cut(s)	266, 1314
AspS9I	GGNCC	5 cut(s)	106, 121, 223, 778, 779
AsuHPI	GGTGA	2 cut(s)	145, 293
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	1336
BaeGI	GKGCMC	1 cut(s)	782
BanI	GGYRCC	2 cut(s)	248, 1311
BanII	GRGCYC	2 cut(s)	603, 782
BauI	CACGAG	2 cut(s)	38, 321
BbrPI	CACGTG	1 cut(s)	29
BbsI	GAAGAC	3 cut(s)	827, 1470, 1499
BbvI	GCAGC	5 cut(s)	853, 928, 931, 959, 1522
BccI	CCATC	6 cut(s)	158, 659, 675, 763, 1181, 1323
BceAI	ACGGC	2 cut(s)	79, 1433
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	1401
BcoDI	GTCTC	2 cut(s)	1106, 1288
BfaI	CTAG	2 cut(s)	803, 1337
BfmI	CTRYAG	2 cut(s)	945, 1508
BfoI	RGCGCY	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	1401
BglII	AGATCT	2 cut(s)	180, 610
BlnI	CCTAGG	1 cut(s)	1336
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	5 cut(s)	106, 121, 223, 778, 779
BmiI	GGNNCC	5 cut(s)	250, 369, 513, 780, 1313
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	2 cut(s)	308, 1282
BmsI	GCATC	2 cut(s)	322, 478
BmuI	ACTGGG	2 cut(s)	308, 1282
BpiI	GAAGAC	3 cut(s)	827, 1470, 1499
BpmI	CTGGAG	3 cut(s)	38, 77, 902
Bsa29I	ATCGAT	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	179
BsaHI	GRCGYC	2 cut(s)	1312, 1438
BsaJI	CCNNGG	3 cut(s)	118, 226, 1336
BsaWI	WCCGGW	1 cut(s)	1441
Bsc4I	CCNNNNNNNGG	1 cut(s)	868
Bse1I	ACTGG	6 cut(s)	21, 250, 314, 436, 1211, 1277
Bse3DI	GCAATG	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	1441
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	118, 226, 1336
BseGI	GGATG	2 cut(s)	686, 1192
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	868
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	1 cut(s)	1017
BseNI	ACTGG	6 cut(s)	21, 250, 314, 436, 1211, 1277
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	5 cut(s)	853, 928, 931, 959, 1522
BsgI	GTGCAG	2 cut(s)	867, 945
Bsh1236I	CGCG	2 cut(s)	129, 919
BshFI	GGCC	6 cut(s)	123, 224, 234, 780, 995, 1121
BshNI	GGYRCC	2 cut(s)	248, 1311
BshVI	ATCGAT	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	1442
BslI	CCNNNNNNNGG	1 cut(s)	868
BsmAI	GTCTC	2 cut(s)	1106, 1288
BsnI	GGCC	6 cut(s)	123, 224, 234, 780, 995, 1121
Bsp120I	GGGCCC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	603, 782
Bsp13I	TCCGGA	1 cut(s)	1441
Bsp143I	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
BspACI	CCGC	8 cut(s)	33, 52, 61, 92, 127, 133, 221, 1257
BspANI	GGCC	6 cut(s)	123, 224, 234, 780, 995, 1121
BspCNI	CTCAG	1 cut(s)	1018
BspDI	ATCGAT	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	1441
BspFNI	CGCG	2 cut(s)	129, 919
BspHI	TCATGA	2 cut(s)	81, 1056
BspLI	GGNNCC	5 cut(s)	250, 369, 513, 780, 1313
BspMAI	CTGCAG	2 cut(s)	949, 1512
BspPI	GGATC	1 cut(s)	1452
BspQI	GCTCTTC	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	248, 1311
BsrBI	CCGCTC	3 cut(s)	35, 52, 61
BsrDI	GCAATG	1 cut(s)	662
BsrI	ACTGG	6 cut(s)	21, 250, 314, 436, 1211, 1277
BssECI	CCNNGG	3 cut(s)	118, 226, 1336
BssMI	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
BssNAI	GTATAC	1 cut(s)	1343
BssNI	GRCGYC	2 cut(s)	1312, 1438
BssSI	CACGAG	2 cut(s)	38, 321
BssT1I	CCWWGG	1 cut(s)	1336
Bst1107I	GTATAC	1 cut(s)	1343
Bst2BI	CACGAG	2 cut(s)	38, 321
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	6 cut(s)	110, 757, 835, 1268, 1325, 1398
Bst6I	CTCTTC	5 cut(s)	645, 1098, 1104, 1397, 1449
BstACI	GRCGYC	2 cut(s)	1312, 1438
BstAPI	GCANNNNNTGC	1 cut(s)	1327
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	1 cut(s)	1026
BstENI	CCTNNNNNAGG	1 cut(s)	866
BstF5I	GGATG	2 cut(s)	686, 1192
BstFNI	CGCG	2 cut(s)	129, 919
BstH2I	RGCGCY	1 cut(s)	1315
BstHHI	GCGC	2 cut(s)	266, 1314
BstKTI	GATC	9 cut(s)	144, 183, 277, 613, 721, 739, 1371, 1447, 1507
BstMAI	GTCTC	2 cut(s)	1106, 1288
BstMBI	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 58, 61, 947, 1216, 1254, 1318, 1327, 1519
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	945, 1508
BstSLI	GKGCMC	1 cut(s)	782
BstUI	CGCG	2 cut(s)	129, 919
BstV1I	GCAGC	5 cut(s)	853, 928, 931, 959, 1522
BstV2I	GAAGAC	3 cut(s)	827, 1470, 1499
BstX2I	RGATCY	3 cut(s)	180, 610, 1444
BstXI	CCANNNNNNTGG	1 cut(s)	1182
BstYI	RGATCY	3 cut(s)	180, 610, 1444
BstZ17I	GTATAC	1 cut(s)	1343
Bsu15I	ATCGAT	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	1401
BsuRI	GGCC	6 cut(s)	123, 224, 234, 780, 995, 1121
BsuTUI	ATCGAT	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	686, 1192
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	4 cut(s)	243, 353, 391, 1163
Cac8I	GCNNGC	1 cut(s)	846
CaiI	CAGNNNCTG	2 cut(s)	1272, 1522
CciI	TCATGA	2 cut(s)	81, 1056
CfoI	GCGC	2 cut(s)	266, 1314
Cfr13I	GGNCC	5 cut(s)	106, 121, 223, 778, 779
ClaI	ATCGAT	1 cut(s)	277
CseI	GACGC	2 cut(s)	118, 1427
Csp6I	GTAC	4 cut(s)	115, 472, 541, 831
CspCI	CAANNNNNGTGG	2 cut(s)	1152, 1187
CviAII	CATG	5 cut(s)	82, 422, 710, 1057, 1223
CviQI	GTAC	4 cut(s)	115, 472, 541, 831
DdeI	CTNAG	1 cut(s)	1026
DinI	GGCGCC	1 cut(s)	1313
DpnI	GATC	9 cut(s)	143, 182, 276, 612, 720, 738, 1370, 1446, 1506
DpnII	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
DraI	TTTAAA	1 cut(s)	972
Eam1104I	CTCTTC	5 cut(s)	645, 1098, 1104, 1397, 1449
EarI	CTCTTC	5 cut(s)	645, 1098, 1104, 1397, 1449
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	1336
Eco24I	GRGCYC	2 cut(s)	603, 782
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	545, 839
Eco72I	CACGTG	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	866
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	1238
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	1336
EcoT38I	GRGCYC	2 cut(s)	603, 782
EgeI	GGCGCC	1 cut(s)	1313
EheI	GGCGCC	1 cut(s)	1313
ErhI	CCWWGG	1 cut(s)	1336
FaeI	CATG	5 cut(s)	85, 425, 713, 1060, 1226
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FatI	CATG	5 cut(s)	81, 421, 709, 1056, 1222
FauI	CCCGC	1 cut(s)	1250
FauNDI	CATATG	1 cut(s)	1078
FblI	GTMKAC	1 cut(s)	1342
FokI	GGATG	2 cut(s)	693, 1199
FriOI	GRGCYC	2 cut(s)	603, 782
FspBI	CTAG	2 cut(s)	803, 1337
GlaI	GCGC	2 cut(s)	265, 1313
GsuI	CTGGAG	3 cut(s)	38, 77, 902
HaeII	RGCGCY	1 cut(s)	1315
HaeIII	GGCC	6 cut(s)	123, 224, 234, 780, 995, 1121
HapII	CCGG	1 cut(s)	1442
HgaI	GACGC	2 cut(s)	118, 1427
HhaI	GCGC	2 cut(s)	266, 1314
Hin1I	GRCGYC	2 cut(s)	1312, 1438
Hin1II	CATG	5 cut(s)	85, 425, 713, 1060, 1226
Hin6I	GCGC	2 cut(s)	264, 1312
HinP1I	GCGC	2 cut(s)	264, 1312
HincII	GTYRAC	2 cut(s)	9, 964
HindII	GTYRAC	2 cut(s)	9, 964
HindIII	AAGCTT	2 cut(s)	396, 1217
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	1442
HphI	GGTGA	2 cut(s)	145, 293
Hpy166II	GTNNAC	4 cut(s)	9, 964, 1343, 1429
Hpy188I	TCNGA	1 cut(s)	230
Hpy8I	GTNNAC	4 cut(s)	9, 964, 1343, 1429
HpyAV	CCTTC	4 cut(s)	67, 202, 625, 1466
HpyCH4III	ACNGT	6 cut(s)	110, 757, 835, 1268, 1325, 1398
HpyCH4IV	ACGT	3 cut(s)	28, 255, 1099
HpyCH4V	TGCA	7 cut(s)	421, 569, 607, 848, 926, 947, 1510
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 58, 61, 947, 1216, 1254, 1318, 1327, 1519
HpyF3I	CTNAG	1 cut(s)	1026
HpySE526I	ACGT	3 cut(s)	28, 255, 1099
Hsp92I	GRCGYC	2 cut(s)	1312, 1438
Hsp92II	CATG	5 cut(s)	85, 425, 713, 1060, 1226
HspAI	GCGC	2 cut(s)	264, 1312
KasI	GGCGCC	1 cut(s)	1311
Kpn2I	TCCGGA	1 cut(s)	1441
Kzo9I	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	4 cut(s)	19, 49, 58, 955
Lsp1109I	GCAGC	5 cut(s)	853, 928, 931, 959, 1522
LweI	GCATC	2 cut(s)	322, 478
MaeI	CTAG	2 cut(s)	803, 1337
MaeII	ACGT	3 cut(s)	28, 255, 1099
MaeIII	GTNAC	2 cut(s)	1268, 1475
MalI	GATC	9 cut(s)	143, 182, 276, 612, 720, 738, 1370, 1446, 1506
MbiI	CCGCTC	3 cut(s)	35, 52, 61
MboI	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
MflI	RGATCY	3 cut(s)	180, 610, 1444
MhlI	GDGCHC	2 cut(s)	603, 782
Mly113I	GGCGCC	1 cut(s)	1312
MmeI	TCCRAC	1 cut(s)	870
MroI	TCCGGA	1 cut(s)	1441
MroXI	GAANNNNTTC	2 cut(s)	77, 1358
MseI	TTAA	4 cut(s)	444, 971, 1302, 1528
MspI	CCGG	1 cut(s)	1442
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	129, 919
MwoI	GCNNNNNNNGC	9 cut(s)	19, 58, 61, 947, 1216, 1254, 1318, 1327, 1519
NarI	GGCGCC	1 cut(s)	1312
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
NlaIII	CATG	5 cut(s)	85, 425, 713, 1060, 1226
NlaIV	GGNNCC	5 cut(s)	250, 369, 513, 780, 1313
NspI	RCATGY	1 cut(s)	713
PagI	TCATGA	2 cut(s)	81, 1056
PciSI	GCTCTTC	1 cut(s)	645
PdmI	GAANNNNTTC	2 cut(s)	77, 1358
PfeI	GAWTC	1 cut(s)	289
PluTI	GGCGCC	1 cut(s)	1315
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	5 cut(s)	250, 369, 513, 780, 1313
PspOMI	GGGCCC	1 cut(s)	778
PspPI	GGNCC	5 cut(s)	106, 121, 223, 778, 779
PstI	CTGCAG	2 cut(s)	949, 1512
PstNI	CAGNNNCTG	2 cut(s)	1272, 1522
PsuI	RGATCY	3 cut(s)	180, 610, 1444
RsaI	GTAC	4 cut(s)	116, 473, 542, 832
RsaNI	GTAC	4 cut(s)	115, 472, 541, 831
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	444, 971, 1302, 1528
Sau3AI	GATC	9 cut(s)	141, 180, 274, 610, 718, 736, 1368, 1444, 1504
Sau96I	GGNCC	5 cut(s)	106, 121, 223, 778, 779
ScaI	AGTACT	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	603, 782
SfaNI	GCATC	2 cut(s)	322, 478
SfcI	CTRYAG	2 cut(s)	945, 1508
SfoI	GGCGCC	1 cut(s)	1313
SinI	GGWCC	1 cut(s)	106
SsiI	CCGC	8 cut(s)	33, 52, 61, 92, 127, 133, 221, 1257
SspDI	GGCGCC	1 cut(s)	1311
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	803, 1337
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	1336
TaaI	ACNGT	6 cut(s)	110, 757, 835, 1268, 1325, 1398
TaiI	ACGT	3 cut(s)	31, 258, 1102
TaqI	TCGA	3 cut(s)	144, 277, 378
TatI	WGTACW	2 cut(s)	471, 540
TauI	GCSGC	5 cut(s)	35, 55, 64, 94, 224
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	4 cut(s)	444, 971, 1302, 1528
Tru9I	TTAA	4 cut(s)	444, 971, 1302, 1528
TscAI	CASTG	4 cut(s)	250, 360, 391, 1170
TseI	GCWGC	5 cut(s)	841, 941, 944, 947, 1510
TspRI	CASTG	4 cut(s)	250, 360, 391, 1170
VpaK11BI	GGWCC	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	866
XapI	RAATTY	3 cut(s)	452, 644, 1238
XceI	RCATGY	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmaJI	CCTAGG	1 cut(s)	1336
XmiI	GTMKAC	1 cut(s)	1342
XmnI	GAANNNNTTC	2 cut(s)	77, 1358
XspI	CTAG	2 cut(s)	803, 1337
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.