Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Reverse (-)

16052160 .. 16055246

Gene Structure 3087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTTTATATAAACCAAGGTATTCATGATATTATAACAAGGCTGGTGGACCGATTCCCTCCTTTAAAGGCATTTCATTTTGTCCTTGACGACACTGATGAGGTGTTCTTGATCCTGTTACCTACAAAATCTCATATGTACACTCACGTATATGCTTTTGCAACCCATCCTCTAGGTGAAAGTGATGGCACCAAAAACTATAATGAGAGGAGCAAAAAGATTGTTAGAAGAGTGATGATGGAAATCGTGACAATGAACAAAAAATTCAACAAATTTCGTATGGTGAAGATTTTGTTACAAGAAGAACTACATGTAATCGTGTTGATCAGATTATATCATGTAGATGGAAAAGAGGCTGAAAAGCAGCTGAGCTCTAGTTGGATTCTCATGCGAGCTAGTAGTCTCGGAGTACCTACAACTATTGAATGGCTGAATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCATTGACCCTAGAGGAAGTGACATTCCACATTCACCTGTTATGTATGCACATCTGATTGTGGAGATCGACAAAACAAAGTTATATGTAGATACTTCCAAAGTAGGCATGAGGTGTAGGATCACCTGGCGAATGCGGGTTTCAGGCCATATGACTCCATTCTTTCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

211

Amino Acids

24.44

Weight (kDa)

9.49

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	159 - 190	4.4e-07	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	2 cut(s)	106, 590
AcsI	RAATTY	2 cut(s)	263, 272
AfaI	GTAC	2 cut(s)	140, 411
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	268, 425
AjnI	CCWGG	2 cut(s)	448, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	3 cut(s)	367, 372, 395
AluI	AGCT	3 cut(s)	367, 372, 395
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	106, 590
AoxI	GGCC	2 cut(s)	444, 607
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	2 cut(s)	263, 272
AspS9I	GGNCC	2 cut(s)	49, 445
AsuHPI	GGTGA	4 cut(s)	188, 295, 489, 577
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	4 cut(s)	174, 179, 232, 338
BciT130I	CCWGG	2 cut(s)	450, 589
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	4 cut(s)	173, 375, 396, 474
BisI	GCNGC	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	2 cut(s)	450, 589
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 445
BmiI	GGNNCC	2 cut(s)	190, 447
BmrFI	CCNGG	2 cut(s)	450, 589
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	16, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	450, 589
BseDI	CCNNGG	2 cut(s)	16, 448
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	446, 609
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	2 cut(s)	446, 609
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	111, 324, 528, 582
Bsp1720I	GCTNAGC	1 cut(s)	368
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	2 cut(s)	446, 609
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	190, 447
BspPI	GGATC	2 cut(s)	106, 590
BspT107I	GGYRCC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	16, 448
BssMI	GATC	4 cut(s)	111, 324, 528, 582
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	450, 589
Bst6I	CTCTTC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	4 cut(s)	114, 327, 531, 585
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	4 cut(s)	111, 324, 528, 582
BstNI	CCWGG	2 cut(s)	450, 589
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	448, 587
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	446, 609
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	49, 445
Csp6I	GTAC	2 cut(s)	139, 410
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	5 cut(s)	26, 311, 338, 388, 571
CviJI	RGCY	8 cut(s)	43, 356, 367, 372, 395, 430, 446, 609
CviKI_1	RGCY	8 cut(s)	43, 356, 367, 372, 395, 430, 446, 609
CviQI	GTAC	2 cut(s)	139, 410
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	4 cut(s)	113, 326, 530, 584
DpnII	GATC	4 cut(s)	111, 324, 528, 582
DraI	TTTAAA	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	448, 587
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	29, 314, 341, 391, 574
FatI	CATG	5 cut(s)	25, 310, 337, 387, 570
FauI	CCCGC	1 cut(s)	591
FauNDI	CATATG	2 cut(s)	135, 612
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	4 cut(s)	173, 375, 396, 474
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	446, 609
Hin1II	CATG	5 cut(s)	29, 314, 341, 391, 574
HinfI	GANTC	3 cut(s)	54, 382, 616
HphI	GGTGA	4 cut(s)	188, 295, 489, 577
Hpy166II	GTNNAC	2 cut(s)	49, 141
Hpy188I	TCNGA	3 cut(s)	329, 407, 519
Hpy188III	TCNNGA	3 cut(s)	26, 109, 247
Hpy8I	GTNNAC	2 cut(s)	49, 141
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	161, 512
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	29, 314, 341, 391, 574
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	111, 324, 528, 582
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	8 cut(s)	29, 128, 435, 462, 513, 574, 591, 601
Lsp1109I	GCAGC	1 cut(s)	376
MaeI	CTAG	4 cut(s)	173, 375, 396, 474
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	4 cut(s)	117, 247, 294, 482
MalI	GATC	4 cut(s)	113, 326, 530, 584
MboI	GATC	4 cut(s)	111, 324, 528, 582
MboII	GAAGA	3 cut(s)	240, 298, 314
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	263, 272
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	69, 94, 180, 201, 346, 470, 567
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	150, 342
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	450, 589
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	2 cut(s)	450, 589
NdeI	CATATG	2 cut(s)	135, 612
NdeII	GATC	4 cut(s)	111, 324, 528, 582
NlaIII	CATG	5 cut(s)	29, 314, 341, 391, 574
NlaIV	GGNNCC	2 cut(s)	190, 447
NmuCI	GTSAC	2 cut(s)	247, 482
NspI	RCATGY	1 cut(s)	314
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	54, 382
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	148
PscI	ACATGT	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	448, 587
PspGI	CCWGG	2 cut(s)	448, 587
PspN4I	GGNNCC	2 cut(s)	190, 447
PspPI	GGNCC	2 cut(s)	49, 445
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	140, 411
RsaNI	GTAC	2 cut(s)	139, 410
RseI	CAYNNNNRTG	2 cut(s)	150, 342
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	4 cut(s)	111, 324, 528, 582
Sau96I	GGNCC	2 cut(s)	49, 445
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	450, 589
SduI	GDGCHC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	150, 342
Sse9I	AATT	2 cut(s)	263, 272
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	4 cut(s)	173, 375, 396, 474
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	448, 587
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	531
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	263, 272
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	54, 382
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	247, 482
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	2 cut(s)	247, 482
TspDTI	ATGAA	3 cut(s)	14, 65, 269
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	263, 272
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	4 cut(s)	173, 375, 396, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.