Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008128.1

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Forward (+)

50562 .. 57569

Gene Structure 7008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008128.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

atgaacaaagagagagttcagttcggccaagcagcaaagcgaagagacatggacctatcaatcgggctggttggtttccatcctagactgatccgtattcttcacggctcaggggaggcagaagaagatgtcgtcgacgctactggaggtgacgcgtggcgctcacgaggaggtgaagggagcgttctcacttgtcagtattggagagtcgagagaaaccaaagccctaaccgcagctcagctcaggggaggcagaagaagaagaagaagaagatgtcgtcgacgctactggaggtgacgcgtggcgctcacgaggaggtggagcgcttggagcgtctgatagtgaaggacttacagaacgagccggcgagcagcaaggaacgcttggctcagagccaccgtgtccgcctcatgatcgacaccgtcacctccaccacagaaagacttattgagatctatgaggataacgataatgcgaggaaggacgagattgcggctctcggaggccaaactgccaccggcaccaatgtgtttagtgcattctatgatagattgaaagagatccgtgagtaccataggagacatccagctgcactagttgtcgatcctaatgaggaacatgaagccctgctcaaggaggagcctcaagtagagttcagtggagaggaagcttatggacgatacctggatttacatgaactgtacaatcagtatatcaattctaaatttggagagcccattgagtactctgcttatcttgatgttttttcacaaccacataagattcctcggaagctcaagtctacaaggcagtacagggaatatcttgaaaatctagttcagtatctggtatatttcttccaccggacagagccattgcaagatcttgatagaatattcgcaaaggttgaaactgaatttgaagaacaatgggcagatggtaaggtagaagaatgggaaaatgcgattcaggatggtgaacatgttcaagatcagcagactgttattgatcttgactattttagcacagtggaagaactggtggaattgggtcctgaaaagctaaaggaggcattggcttcgttaggactgaagatagggggtaccgttcagcaacgtgcagagaggcttttacttacaaaggatacacctctggaaaagttggacaagaagcattttgccaaagggtcacgtggttcagcacagaatggggctgctgtagctccacagcaagttggcatgttaatagaaattgctctcttggaagccaaattgaaaaaactaagcgacttactgagtgaggctattgaacgaacaaaagacaacattgttaagaaacaggctttgacatatgaagaaattgcagcagaacgtgaggatgaagagacacaggctgatactgaaagtgatgacgatgagcagcagatttataatccactcaaattgccaatgggttgggatgggaagccgataccttactggctgtataagcttcatggtcttggtcaggaattcaagtgtgagatatgtgggaatcagagttactgggggcgtagagcttttgagcggcattttaaggaatggcgccatcagcatggaatgcgttgccttggcataccaaacaccaagaacttcaatgagatcacatcaattgaggaagcacaagaattgtggaagaggatacaagcacggcaaggggtgaacaagtggcgcccagaccttgaagaagacaagcggccttcttgccgctccctacccccagcctctgtcgctttcatggcttccatcgacgccgtcaccgctagctttgcagcctccttggctcttgctgagggtggtcaagcccctgaccttggaagaattggtggaggcccggtaaagaaatcctcccaatcttttcttcttgggaaacctctcacttgcaaacctgtggattctgccactttcaagtctcacttccttcgaacttggatggtggaaaaggagtttagggttcaggaaaagaatgacaatctattcctattctctttcggatcagcccgagaccgcaataaggttctcaaaggtggcgtttggtgttttaatcgtgctccagtctgcctgaaggagtacgacggagttctaccccttgctgaagtttccatgaaacatgttcgcatctgggctagggttttaggtattcccccactgtatgaagagcctgataaccttgtcctcattgggaatctcttggggggtttcctggattatgacaagaaggagtttcgaagaggatcaatgcgcatcttcttcatgcatgacatctccaaacctattctcttggagcgtaagatcttcttggatacagggattgaaccaatcttgaagtttcagtttgagcatctcaaaggtaggtgttctcaatgcggcctgcttacgcattcgggggtcaaatgtatggcacccaacccagccatctccacccctagggttataccatttggtggtcctccaactgcaggtggaattttctccttttcagcccaggccagtcgagaacttccacaactctcctctgccttgcttaataagaaaaagcctgtcatccgaaagctagacagatcattatcagaagttgatccatctgcgagttccgtggtcgatatggctgctgaggaaactgatgaacctgtaggagcacagcagacagagcaggttaggactgatgcttccggttcggccttcaagattaggagttctgaatctagcccacctgttcagactgcgcaagtggagcctaaggtgtataagaaaagaaacaggactggaggttgcactccctccccaaagaaactcaagacaatcctgggtggtaagactcccatactgcgagtagatgccctagggttagttgaagctgttaatgagagtgaacaaggaattctgaagaagaaggttggaagacctctgggaagcaagaacaaacttcctcgccctcagaagaagatgagtgggactttgcgtctgacttacccttcgtttgaagctgctcatgagattagccctaagcataagggcaagggaaagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

1023

Amino Acids

115.42

Weight (kDa)

8.49

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1431
AarI	CACCTGC	1 cut(s)	2489
Acc16I	TGCGCA	2 cut(s)	2282, 2766
Acc36I	ACCTGC	2 cut(s)	2489, 2683
Acc65I	GGTACC	1 cut(s)	1103
AccB1I	GGYRCC	5 cut(s)	521, 1103, 1584, 1710, 2440
AccB7I	CCANNNNNTGG	1 cut(s)	2483
AccBSI	CCGCTC	2 cut(s)	1567, 1749
AccI	GTMKAC	3 cut(s)	135, 281, 803
AccII	CGCG	2 cut(s)	155, 301
AciI	CCGC	9 cut(s)	232, 406, 494, 1567, 1735, 1747, 1800, 2047, 2406
AclWI	GGATC	6 cut(s)	85, 556, 599, 2041, 2281, 2612
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	5 cut(s)	725, 917, 1511, 2505, 2919
AcuI	CTGAAG	4 cut(s)	1112, 2123, 2154, 2945
AcvI	CACGTG	1 cut(s)	1193
AcyI	GRCGYC	3 cut(s)	1585, 1711, 1791
AfaI	GTAC	6 cut(s)	572, 704, 746, 815, 1105, 2111
AfeI	AGCGCT	1 cut(s)	326
AfiI	CCNNNNNNNGG	6 cut(s)	634, 1853, 2053, 2466, 2483, 2498
AflIII	ACRYGT	4 cut(s)	153, 299, 982, 2149
AhdI	GACNNNNNGTC	1 cut(s)	3000
AhlI	ACTAGT	1 cut(s)	595
AjnI	CCWGG	4 cut(s)	684, 2241, 2523, 2844
AjuI	GAANNNNNNNTTGG	2 cut(s)	1884, 1916
AleI	CACNNNNGTG	1 cut(s)	527
Alw21I	GWGCWC	2 cut(s)	2092, 2680
Alw26I	GTCTC	5 cut(s)	39, 574, 1379, 1956, 2037
AlwI	GGATC	6 cut(s)	85, 556, 599, 2041, 2281, 2612
AlwNI	CAGNNNCTG	2 cut(s)	847, 1766
Ama87I	CYCGRG	1 cut(s)	2040
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	7 cut(s)	25, 505, 1736, 1870, 2407, 2526, 2718
ApoI	RAATTY	5 cut(s)	725, 917, 1511, 2505, 2919
ArsI	GACNNNNNNTTYG	2 cut(s)	2998, 3030
Asp700I	GAANNNNTTC	1 cut(s)	984
Asp718I	GGTACC	1 cut(s)	1103
AspA2I	CCTAGG	2 cut(s)	2465, 2881
AspLEI	GCGC	7 cut(s)	162, 308, 327, 1587, 1713, 2283, 2767
AspS9I	GGNCC	4 cut(s)	52, 1052, 1871, 2486
AsuC2I	CCSGG	1 cut(s)	1874
AsuHPI	GGTGA	7 cut(s)	161, 185, 307, 418, 989, 1711, 1789
AsuII	TTCGAA	2 cut(s)	1963, 2266
AsuNHI	GCTAGC	1 cut(s)	1802
AvaI	CYCGRG	1 cut(s)	2040
AvaII	GGWCC	3 cut(s)	52, 1052, 2486
AvrII	CCTAGG	2 cut(s)	2465, 2881
AxyI	CCTNAGG	1 cut(s)	2778
BanI	GGYRCC	5 cut(s)	521, 1103, 1584, 1710, 2440
BanII	GRGCYC	1 cut(s)	738
BauI	CACGAG	2 cut(s)	165, 311
BbrPI	CACGTG	1 cut(s)	1193
BbsI	GAAGAC	2 cut(s)	1734, 2947
Bbv12I	GWGCWC	2 cut(s)	2092, 2680
BbvCI	CCTCAGC	2 cut(s)	1830, 2652
BccI	CCATC	9 cut(s)	87, 932, 968, 1454, 1596, 1793, 1966, 2462, 2629
BceAI	ACGGC	3 cut(s)	121, 1706, 1778
BcgI	CGANNNNNNTGC	4 cut(s)	1062, 1096, 2630, 2664
BciT130I	CCWGG	4 cut(s)	686, 2243, 2525, 2846
BciVI	GTATCC	3 cut(s)	1138, 1674, 2335
BcnI	CCSGG	1 cut(s)	1874
BcoDI	GTCTC	5 cut(s)	39, 574, 1379, 1956, 2037
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	9 cut(s)	84, 596, 836, 1803, 2166, 2466, 2594, 2745, 2882
BfmI	CTRYAG	3 cut(s)	1218, 2496, 2670
BfoI	RGCGCY	5 cut(s)	163, 309, 328, 1588, 1714
BfuAI	ACCTGC	2 cut(s)	2489, 2683
BfuI	GTATCC	3 cut(s)	1138, 1674, 2335
BglI	GCCNNNNNGGC	1 cut(s)	1820
BglII	AGATCT	3 cut(s)	453, 883, 2331
BlnI	CCTAGG	2 cut(s)	2465, 2881
BlpI	GCTNAGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	5 cut(s)	686, 1874, 2243, 2525, 2846
Bme18I	GGWCC	3 cut(s)	52, 1052, 2486
BmeRI	GACNNNNNGTC	1 cut(s)	3000
BmeT110I	CYCGRG	1 cut(s)	2040
BmgT120I	GGNCC	4 cut(s)	52, 1052, 1871, 2486
BmiI	GGNNCC	8 cut(s)	523, 642, 1053, 1105, 1586, 1712, 2442, 2775
BmrFI	CCNGG	5 cut(s)	686, 1874, 2243, 2525, 2846
BmrI	ACTGGG	1 cut(s)	1555
BmsI	GCATC	5 cut(s)	2166, 2292, 2389, 2695, 2866
BmtI	GCTAGC	1 cut(s)	1806
BmuI	ACTGGG	1 cut(s)	1555
BpiI	GAAGAC	2 cut(s)	1734, 2947
BpmI	CTGGAG	4 cut(s)	165, 311, 2076, 2826
Bpu10I	CCTNAGC	5 cut(s)	109, 243, 1830, 2652, 3045
Bpu1102I	GCTNAGC	1 cut(s)	238
Bpu14I	TTCGAA	2 cut(s)	1963, 2266
BpuEI	CTTGAG	4 cut(s)	617, 630, 782, 2819
BpuMI	CCSGG	1 cut(s)	1874
BsaAI	YACGTR	1 cut(s)	1193
BsaBI	GATNNNNATC	1 cut(s)	2605
BsaHI	GRCGYC	3 cut(s)	1585, 1711, 1791
BsaI	GGTCTC	1 cut(s)	2037
BsaJI	CCNNGG	9 cut(s)	788, 1609, 1818, 1852, 2465, 2523, 2634, 2845, 2881
BsaWI	WCCGGW	2 cut(s)	864, 2711
BsaXI	ACNNNNNCTCC	2 cut(s)	1860, 1890
Bsc4I	CCNNNNNNNGG	6 cut(s)	634, 1853, 2053, 2466, 2483, 2498
Bse118I	RCCGGY	2 cut(s)	364, 518
Bse1I	ACTGG	8 cut(s)	148, 294, 1044, 1484, 1550, 2093, 2529, 2809
Bse21I	CCTNAGG	1 cut(s)	2778
Bse3DI	GCAATG	1 cut(s)	875
Bse8I	GATNNNNATC	1 cut(s)	2605
BseBI	CCWGG	4 cut(s)	686, 2243, 2525, 2846
BseDI	CCNNGG	9 cut(s)	788, 1609, 1818, 1852, 2465, 2523, 2634, 2845, 2881
BseGI	GGATG	7 cut(s)	79, 583, 979, 1384, 1465, 1977, 2583
BseJI	GATNNNNATC	1 cut(s)	2605
BseLI	CCNNNNNNNGG	6 cut(s)	634, 1853, 2053, 2466, 2483, 2498
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	8 cut(s)	123, 252, 257, 404, 1286, 1821, 2643, 2990
BseNI	ACTGG	8 cut(s)	148, 294, 1044, 1484, 1550, 2093, 2529, 2809
BseRI	GAGGAG	4 cut(s)	183, 329, 653, 2542
BseYI	CCCAGC	2 cut(s)	1759, 2449
BsgI	GTGCAG	2 cut(s)	576, 1140
Bsh1236I	CGCG	2 cut(s)	155, 301
BshFI	GGCC	7 cut(s)	27, 507, 1738, 1872, 2409, 2528, 2720
BshNI	GGYRCC	5 cut(s)	521, 1103, 1584, 1710, 2440
BsiHKAI	GWGCWC	2 cut(s)	2092, 2680
BsiHKCI	CYCGRG	1 cut(s)	2040
BsiSI	CCGG	5 cut(s)	365, 519, 865, 1874, 2712
BslFI	GGGAC	1 cut(s)	3007
BslI	CCNNNNNNNGG	6 cut(s)	634, 1853, 2053, 2466, 2483, 2498
BsmAI	GTCTC	5 cut(s)	39, 574, 1379, 1956, 2037
BsmFI	GGGAC	1 cut(s)	3007
BsmI	GAATGC	3 cut(s)	539, 1605, 2419
BsnI	GGCC	7 cut(s)	27, 507, 1738, 1872, 2409, 2528, 2720
Bso31I	GGTCTC	1 cut(s)	2037
BsoBI	CYCGRG	1 cut(s)	2040
Bsp119I	TTCGAA	2 cut(s)	1963, 2266
Bsp1286I	GDGCHC	3 cut(s)	738, 2092, 2680
Bsp1407I	TGTACA	1 cut(s)	702
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	9 cut(s)	232, 406, 494, 1567, 1735, 1747, 1800, 2047, 2406
BspANI	GGCC	7 cut(s)	27, 507, 1738, 1872, 2409, 2528, 2720
BspCNI	CTCAG	8 cut(s)	122, 251, 256, 403, 1287, 1822, 2644, 2989
BspFNI	CGCG	2 cut(s)	155, 301
BspHI	TCATGA	2 cut(s)	411, 3031
BspLI	GGNNCC	8 cut(s)	523, 642, 1053, 1105, 1586, 1712, 2442, 2775
BspMAI	CTGCAG	1 cut(s)	2500
BspMI	ACCTGC	2 cut(s)	2489, 2683
BspOI	GCTAGC	1 cut(s)	1806
BspPI	GGATC	6 cut(s)	85, 556, 599, 2041, 2281, 2612
BspQI	GCTCTTC	1 cut(s)	2190
BspT104I	TTCGAA	2 cut(s)	1963, 2266
BspT107I	GGYRCC	5 cut(s)	521, 1103, 1584, 1710, 2440
BspTNI	GGTCTC	1 cut(s)	2037
BsrBI	CCGCTC	2 cut(s)	1567, 1749
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	2 cut(s)	364, 518
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	8 cut(s)	148, 294, 1044, 1484, 1550, 2093, 2529, 2809
BssAI	RCCGGY	2 cut(s)	364, 518
BssECI	CCNNGG	9 cut(s)	788, 1609, 1818, 1852, 2465, 2523, 2634, 2845, 2881
BssNI	GRCGYC	3 cut(s)	1585, 1711, 1791
BssSI	CACGAG	2 cut(s)	165, 311
BssT1I	CCWWGG	5 cut(s)	1609, 1818, 1852, 2465, 2881
Bst2BI	CACGAG	2 cut(s)	165, 311
Bst2UI	CCWGG	4 cut(s)	686, 2243, 2525, 2846
Bst4CI	ACNGT	7 cut(s)	401, 424, 702, 1003, 1030, 1108, 2190
Bst6I	CTCTTC	5 cut(s)	37, 1377, 1670, 2190, 2263
BstACI	GRCGYC	3 cut(s)	1585, 1711, 1791
BstAPI	GCANNNNNTGC	1 cut(s)	1600
BstAUI	TGTACA	1 cut(s)	702
BstBAI	YACGTR	1 cut(s)	1193
BstBI	TTCGAA	2 cut(s)	1963, 2266
BstC8I	GCNNGC	4 cut(s)	366, 370, 1804, 2411
BstDSI	CCRYGG	1 cut(s)	2634
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	7 cut(s)	79, 583, 979, 1384, 1465, 1977, 2583
BstFNI	CGCG	2 cut(s)	155, 301
BstH2I	RGCGCY	5 cut(s)	163, 309, 328, 1588, 1714
BstHHI	GCGC	7 cut(s)	162, 308, 327, 1587, 1713, 2283, 2767
BstMAI	GTCTC	5 cut(s)	39, 574, 1379, 1956, 2037
BstNI	CCWGG	4 cut(s)	686, 2243, 2525, 2846
BstNSI	RCATGY	3 cut(s)	986, 1243, 2153
BstSCI	CCNGG	5 cut(s)	684, 1872, 2241, 2523, 2844
BstSFI	CTRYAG	3 cut(s)	1218, 2496, 2670
BstUI	CGCG	2 cut(s)	155, 301
BstV2I	GAAGAC	2 cut(s)	1734, 2947
BstX2I	RGATCY	4 cut(s)	453, 561, 883, 2331
BstXI	CCANNNNNNTGG	2 cut(s)	1455, 1595
BstYI	RGATCY	4 cut(s)	453, 561, 883, 2331
Bsu36I	CCTNAGG	1 cut(s)	2778
BsuI	GTATCC	3 cut(s)	1138, 1674, 2335
BsuRI	GGCC	7 cut(s)	27, 507, 1738, 1872, 2409, 2528, 2720
BtgI	CCRYGG	1 cut(s)	2634
BtsCI	GGATG	7 cut(s)	79, 583, 979, 1384, 1465, 1977, 2583
BtsIMutI	CAGTG	3 cut(s)	664, 1035, 2186
BveI	ACCTGC	2 cut(s)	2489, 2683
Cac8I	GCNNGC	4 cut(s)	366, 370, 1804, 2411
CaiI	CAGNNNCTG	2 cut(s)	847, 1766
CciI	TCATGA	2 cut(s)	411, 3031
CfoI	GCGC	7 cut(s)	162, 308, 327, 1587, 1713, 2283, 2767
Cfr10I	RCCGGY	2 cut(s)	364, 518
Cfr13I	GGNCC	4 cut(s)	52, 1052, 1871, 2486
CseI	GACGC	7 cut(s)	146, 161, 292, 307, 323, 1799, 2990
Csp6I	GTAC	6 cut(s)	571, 703, 745, 814, 1104, 2110
CspCI	CAANNNNNGTGG	4 cut(s)	1425, 1460, 1652, 1687
CviQI	GTAC	6 cut(s)	571, 703, 745, 814, 1104, 2110
DinI	GGCGCC	2 cut(s)	1586, 1712
DriI	GACNNNNNGTC	1 cut(s)	3000
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	5 cut(s)	37, 1377, 1670, 2190, 2263
Eam1105I	GACNNNNNGTC	1 cut(s)	3000
EarI	CTCTTC	5 cut(s)	37, 1377, 1670, 2190, 2263
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	5 cut(s)	1609, 1818, 1852, 2465, 2881
Eco24I	GRGCYC	1 cut(s)	738
Eco31I	GGTCTC	1 cut(s)	2037
Eco47I	GGWCC	3 cut(s)	52, 1052, 2486
Eco47III	AGCGCT	1 cut(s)	326
Eco57I	CTGAAG	4 cut(s)	1112, 2123, 2154, 2945
Eco72I	CACGTG	1 cut(s)	1193
Eco81I	CCTNAGG	1 cut(s)	2778
Eco88I	CYCGRG	1 cut(s)	2040
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	1052
EcoRI	GAATTC	2 cut(s)	1511, 2919
EcoRII	CCWGG	4 cut(s)	684, 2241, 2523, 2844
EcoT14I	CCWWGG	5 cut(s)	1609, 1818, 1852, 2465, 2881
EcoT22I	ATGCAT	1 cut(s)	2298
EcoT38I	GRGCYC	1 cut(s)	738
EgeI	GGCGCC	2 cut(s)	1586, 1712
EheI	GGCGCC	2 cut(s)	1586, 1712
ErhI	CCWWGG	5 cut(s)	1609, 1818, 1852, 2465, 2881
FalI	AAGNNNNNCTT	6 cut(s)	368, 400, 1940, 1972, 2321, 2353
FaqI	GGGAC	1 cut(s)	3007
FauNDI	CATATG	1 cut(s)	1351
FblI	GTMKAC	3 cut(s)	135, 281, 803
FokI	GGATG	7 cut(s)	66, 570, 986, 1391, 1472, 1984, 2570
FriOI	GRGCYC	1 cut(s)	738
FspAI	RTGCGCAY	1 cut(s)	2282
FspBI	CTAG	9 cut(s)	84, 596, 836, 1803, 2166, 2466, 2594, 2745, 2882
FspI	TGCGCA	2 cut(s)	2282, 2766
GlaI	GCGC	7 cut(s)	161, 307, 326, 1586, 1712, 2282, 2766
GsaI	CCCAGC	2 cut(s)	1763, 2453
GsuI	CTGGAG	4 cut(s)	165, 311, 2076, 2826
HaeII	RGCGCY	5 cut(s)	163, 309, 328, 1588, 1714
HaeIII	GGCC	7 cut(s)	27, 507, 1738, 1872, 2409, 2528, 2720
HapII	CCGG	5 cut(s)	365, 519, 865, 1874, 2712
HgaI	GACGC	7 cut(s)	146, 161, 292, 307, 323, 1799, 2990
HhaI	GCGC	7 cut(s)	162, 308, 327, 1587, 1713, 2283, 2767
Hin1I	GRCGYC	3 cut(s)	1585, 1711, 1791
Hin6I	GCGC	7 cut(s)	160, 306, 325, 1585, 1711, 2281, 2765
HinP1I	GCGC	7 cut(s)	160, 306, 325, 1585, 1711, 2281, 2765
HincII	GTYRAC	2 cut(s)	136, 282
HindII	GTYRAC	2 cut(s)	136, 282
HindIII	AAGCTT	2 cut(s)	669, 1490
HinfI	GANTC	8 cut(s)	207, 784, 967, 1534, 1934, 2224, 2741, 2857
HpaII	CCGG	5 cut(s)	365, 519, 865, 1874, 2712
HphI	GGTGA	7 cut(s)	161, 185, 307, 418, 989, 1711, 1789
Hpy166II	GTNNAC	6 cut(s)	136, 282, 804, 980, 1702, 2912
Hpy8I	GTNNAC	6 cut(s)	136, 282, 804, 980, 1702, 2912
Hpy99I	CGWCG	6 cut(s)	137, 140, 283, 286, 1793, 2117
HpyCH4III	ACNGT	7 cut(s)	401, 424, 702, 1003, 1030, 1108, 2190
HpyCH4IV	ACGT	3 cut(s)	1117, 1192, 1372
HpySE526I	ACGT	3 cut(s)	1117, 1192, 1372
Hsp92I	GRCGYC	3 cut(s)	1585, 1711, 1791
HspAI	GCGC	7 cut(s)	160, 306, 325, 1585, 1711, 2281, 2765
KasI	GGCGCC	2 cut(s)	1584, 1710
KpnI	GGTACC	1 cut(s)	1107
KroI	GCCGGC	1 cut(s)	364
KroNI	GCCGGC	1 cut(s)	366
LguI	GCTCTTC	1 cut(s)	2190
LweI	GCATC	5 cut(s)	2166, 2292, 2389, 2695, 2866
MaeI	CTAG	9 cut(s)	84, 596, 836, 1803, 2166, 2466, 2594, 2745, 2882
MaeII	ACGT	3 cut(s)	1117, 1192, 1372
MaeIII	GTNAC	6 cut(s)	149, 295, 424, 1188, 1541, 1795
MbiI	CCGCTC	2 cut(s)	1567, 1749
MfeI	CAATTG	1 cut(s)	1650
MflI	RGATCY	4 cut(s)	453, 561, 883, 2331
MhlI	GDGCHC	3 cut(s)	738, 2092, 2680
MluI	ACGCGT	2 cut(s)	153, 299
Mly113I	GGCGCC	2 cut(s)	1585, 1711
MlyI	GAGTC	2 cut(s)	216, 2851
MmeI	TCCRAC	3 cut(s)	1143, 2516, 2917
Mph1103I	ATGCAT	1 cut(s)	2298
MroNI	GCCGGC	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	6 cut(s)	1244, 1332, 1575, 2082, 2565, 2901
MslI	CAYNNNNRTG	2 cut(s)	527, 1593
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	5 cut(s)	365, 519, 865, 1874, 2712
MspR9I	CCNGG	5 cut(s)	686, 1874, 2243, 2525, 2846
MunI	CAATTG	1 cut(s)	1650
Mva1269I	GAATGC	3 cut(s)	539, 1605, 2419
MvaI	CCWGG	4 cut(s)	686, 2243, 2525, 2846
MvnI	CGCG	2 cut(s)	155, 301
NaeI	GCCGGC	1 cut(s)	366
NarI	GGCGCC	2 cut(s)	1585, 1711
NciI	CCSGG	1 cut(s)	1874
NdeI	CATATG	1 cut(s)	1351
NgoMIV	GCCGGC	1 cut(s)	364
NheI	GCTAGC	1 cut(s)	1802
NlaIV	GGNNCC	8 cut(s)	523, 642, 1053, 1105, 1586, 1712, 2442, 2775
NmuCI	GTSAC	5 cut(s)	149, 295, 424, 1188, 1795
NsbI	TGCGCA	2 cut(s)	2282, 2766
NsiI	ATGCAT	1 cut(s)	2298
NspI	RCATGY	3 cut(s)	986, 1243, 2153
NspV	TTCGAA	2 cut(s)	1963, 2266
OliI	CACNNNNGTG	1 cut(s)	527
PagI	TCATGA	2 cut(s)	411, 3031
PaqCI	CACCTGC	1 cut(s)	2489
PciI	ACATGT	2 cut(s)	982, 2149
PciSI	GCTCTTC	1 cut(s)	2190
PctI	GAATGC	3 cut(s)	539, 1605, 2419
PdiI	GCCGGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	6 cut(s)	784, 967, 1534, 1934, 2224, 2741
PflFI	GACNNNGTC	2 cut(s)	422, 1793
PflMI	CCANNNNNTGG	1 cut(s)	2483
PfoI	TCCNGGA	1 cut(s)	2241
PleI	GAGTC	2 cut(s)	215, 2851
PluTI	GGCGCC	2 cut(s)	1588, 1714
PmaCI	CACGTG	1 cut(s)	1193
PmlI	CACGTG	1 cut(s)	1193
PpsI	GAGTC	2 cut(s)	215, 2851
Ppu21I	YACGTR	1 cut(s)	1193
PpuMI	RGGWCCY	1 cut(s)	1052
PscI	ACATGT	2 cut(s)	982, 2149
PsiI	TTATAA	1 cut(s)	1431
Psp5II	RGGWCCY	1 cut(s)	1052
Psp6I	CCWGG	4 cut(s)	684, 2241, 2523, 2844
PspCI	CACGTG	1 cut(s)	1193
PspFI	CCCAGC	2 cut(s)	1759, 2449
PspGI	CCWGG	4 cut(s)	684, 2241, 2523, 2844
PspN4I	GGNNCC	8 cut(s)	523, 642, 1053, 1105, 1586, 1712, 2442, 2775
PspPI	GGNCC	4 cut(s)	52, 1052, 1871, 2486
PspPPI	RGGWCCY	1 cut(s)	1052
PstI	CTGCAG	1 cut(s)	2500
PstNI	CAGNNNCTG	2 cut(s)	847, 1766
PsuI	RGATCY	4 cut(s)	453, 561, 883, 2331
PsyI	GACNNNGTC	2 cut(s)	422, 1793
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	6 cut(s)	572, 704, 746, 815, 1105, 2111
RsaNI	GTAC	6 cut(s)	571, 703, 745, 814, 1104, 2110
RseI	CAYNNNNRTG	2 cut(s)	527, 1593
SalI	GTCGAC	2 cut(s)	134, 280
SapI	GCTCTTC	1 cut(s)	2190
SaqAI	TTAA	6 cut(s)	1244, 1332, 1575, 2082, 2565, 2901
Sau96I	GGNCC	4 cut(s)	52, 1052, 1871, 2486
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	216, 2851
ScrFI	CCNGG	5 cut(s)	686, 1874, 2243, 2525, 2846
SduI	GDGCHC	3 cut(s)	738, 2092, 2680
SfaNI	GCATC	5 cut(s)	2166, 2292, 2389, 2695, 2866
SfcI	CTRYAG	3 cut(s)	1218, 2496, 2670
SfoI	GGCGCC	2 cut(s)	1586, 1712
SfuI	TTCGAA	2 cut(s)	1963, 2266
SgrDI	CGTCGACG	2 cut(s)	134, 280
SinI	GGWCC	3 cut(s)	52, 1052, 2486
SmiMI	CAYNNNNRTG	2 cut(s)	527, 1593
SmlI	CTYRAG	4 cut(s)	632, 645, 797, 2834
SmoI	CTYRAG	4 cut(s)	632, 645, 797, 2834
SpeI	ACTAGT	1 cut(s)	595
SsiI	CCGC	9 cut(s)	232, 406, 494, 1567, 1735, 1747, 1800, 2047, 2406
SspDI	GGCGCC	2 cut(s)	1584, 1710
SspI	AATATT	1 cut(s)	897
SspMI	CTAG	9 cut(s)	84, 596, 836, 1803, 2166, 2466, 2594, 2745, 2882
StyD4I	CCNGG	5 cut(s)	684, 1872, 2241, 2523, 2844
StyI	CCWWGG	5 cut(s)	1609, 1818, 1852, 2465, 2881
TaaI	ACNGT	7 cut(s)	401, 424, 702, 1003, 1030, 1108, 2190
TaiI	ACGT	3 cut(s)	1120, 1195, 1375
TatI	WGTACW	3 cut(s)	702, 744, 813
TauI	GCSGC	5 cut(s)	497, 1570, 1738, 1749, 2409
TfiI	GAWTC	6 cut(s)	784, 967, 1534, 1934, 2224, 2741
Tru1I	TTAA	6 cut(s)	1244, 1332, 1575, 2082, 2565, 2901
Tru9I	TTAA	6 cut(s)	1244, 1332, 1575, 2082, 2565, 2901
TscAI	CASTG	3 cut(s)	664, 1035, 2193
TseFI	GTSAC	5 cut(s)	149, 295, 424, 1188, 1795
Tsp45I	GTSAC	5 cut(s)	149, 295, 424, 1188, 1795
TspGWI	ACGGA	4 cut(s)	83, 554, 2130, 2623
TspRI	CASTG	3 cut(s)	664, 1035, 2193
Tth111I	GACNNNGTC	2 cut(s)	422, 1793
Van91I	CCANNNNNTGG	1 cut(s)	2483
VpaK11BI	GGWCC	3 cut(s)	52, 1052, 2486
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	5 cut(s)	725, 917, 1511, 2505, 2919
XceI	RCATGY	3 cut(s)	986, 1243, 2153
XmaJI	CCTAGG	2 cut(s)	2465, 2881
XmiI	GTMKAC	3 cut(s)	135, 281, 803
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	9 cut(s)	84, 596, 836, 1803, 2166, 2466, 2594, 2745, 2882
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	2298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.