Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Reverse (-)

26316474 .. 26318755

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATCGATCTTGATTATTATAGCACGGTGGAAGAACTGATGGAAGTGGGCCCTGAAAAGCTAAAGGAGGCACTAGCTTCATTAGGACTGAAGACAGGTGGTACTGTTCAGCAGCGTGCAGAGCGGCTTTTCCTTACGAAGGACACACCTCTGGAGAAGTTGGACAAGAAACATTTTGCCAAAGGTTCGCGTGGTGCAGAACAGAATGGGGCTGCTGCAGCTCCACAACAAGTTGACAATTTAAAAGAAATTGCTTTATTGGAGGCCAAAACAAAAAAATTATGCGACTTACTGACTGAGGCTATTGAAAGAACAAAAGACAACATCATGAAGAAACAGGCTTTGACATATGAAGAAATTGAAGCAGAACGTGAAGAGGAAGAGACACAGGCCGATACTGAAAGTGATGATGATGAACAGCAGATTTACAATCCACTGAAATTGCCAATGGGTTGGGATGGGAAGCCCATTCCCTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGCGAGATATGCGGGAATTACAGTTACTGGGGACGTAGAGCTTTTGAGAGACATTTTAAGGAATGGCGCCATCAGCATGGTATGCGTTGCCTAGGTATACCAAACACGAAGAACTTCAACGAGATCACATCAATAGAGGAAGCTAAAGAACTATGGAAGAGGATACAAGCACGGCAAGGTGTAAACAAATGGCGCCCGGATCTTGAAGAAGAGTACGAAGACAGAGAAGGTAACATATACAATAAGAAGACATATACTGATCTGCAGCGACAGGGGCTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

267

Amino Acids

31.02

Weight (kDa)

5.32

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	582, 708
AccBSI	CCGCTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	613
AccII	CGCG	1 cut(s)	190
AciI	CCGC	2 cut(s)	124, 528
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	110
AcyI	GRCGYC	2 cut(s)	583, 709
AfaI	GTAC	2 cut(s)	103, 731
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	308, 362, 514, 634, 722
AluBI	AGCT	6 cut(s)	61, 77, 221, 490, 557, 659
AluI	AGCT	6 cut(s)	61, 77, 221, 490, 557, 659
Alw26I	GTCTC	2 cut(s)	377, 559
AlwI	GGATC	1 cut(s)	723
AlwNI	CAGNNNCTG	2 cut(s)	543, 793
AoxI	GGCC	3 cut(s)	49, 264, 390
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	5 cut(s)	112, 212, 215, 218, 781
ApoI	RAATTY	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	629
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	2 cut(s)	585, 711
AspS9I	GGNCC	2 cut(s)	49, 50
AsuC2I	CCSGG	1 cut(s)	713
AvrII	CCTAGG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	582, 708
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	3 cut(s)	98, 741, 770
BbvI	GCAGC	5 cut(s)	124, 199, 202, 230, 793
BccI	CCATC	3 cut(s)	34, 452, 594
BceAI	ACGGC	1 cut(s)	704
BciVI	GTATCC	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	713
BcoDI	GTCTC	2 cut(s)	377, 559
BfaI	CTAG	2 cut(s)	74, 608
BfmI	CTRYAG	2 cut(s)	216, 779
BfoI	RGCGCY	2 cut(s)	586, 712
BfuI	GTATCC	1 cut(s)	672
BisI	GCNGC	6 cut(s)	113, 125, 213, 216, 219, 782
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	6 cut(s)	114, 126, 214, 217, 220, 783
Bme1390I	CCNGG	1 cut(s)	713
BmgT120I	GGNCC	2 cut(s)	49, 50
BmiI	GGNNCC	3 cut(s)	51, 584, 710
BmrFI	CCNGG	1 cut(s)	713
BmrI	ACTGGG	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	3 cut(s)	98, 741, 770
BpmI	CTGGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	713
Bsa29I	ATCGAT	1 cut(s)	6
BsaHI	GRCGYC	2 cut(s)	583, 709
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	482, 548
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	482, 548
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	124, 199, 202, 230, 793
BsgI	GTGCAG	2 cut(s)	138, 216
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	51, 266, 392
BshNI	GGYRCC	2 cut(s)	582, 708
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	377, 559
BsmFI	GGGAC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	51, 266, 392
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	3, 7, 639, 715, 775
BspACI	CCGC	2 cut(s)	124, 528
BspANI	GGCC	3 cut(s)	51, 266, 392
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	51, 584, 710
BspMAI	CTGCAG	2 cut(s)	220, 783
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	2 cut(s)	582, 708
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	482, 548
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	5 cut(s)	3, 7, 639, 715, 775
BssNAI	GTATAC	1 cut(s)	614
BssNI	GRCGYC	2 cut(s)	583, 709
BssT1I	CCWWGG	1 cut(s)	607
Bst1107I	GTATAC	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	28, 106, 539
Bst6I	CTCTTC	4 cut(s)	369, 375, 668, 720
BstACI	GRCGYC	2 cut(s)	583, 709
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	2 cut(s)	586, 712
BstHHI	GCGC	2 cut(s)	585, 711
BstKTI	GATC	5 cut(s)	6, 10, 642, 718, 778
BstMAI	GTCTC	2 cut(s)	377, 559
BstMBI	GATC	5 cut(s)	3, 7, 639, 715, 775
BstMWI	GCNNNNNNNGC	7 cut(s)	121, 218, 487, 525, 589, 598, 790
BstSCI	CCNGG	1 cut(s)	711
BstSFI	CTRYAG	2 cut(s)	216, 779
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	5 cut(s)	124, 199, 202, 230, 793
BstV2I	GAAGAC	3 cut(s)	98, 741, 770
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	2 cut(s)	453, 593
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	3 cut(s)	51, 266, 392
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	2 cut(s)	543, 793
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	2 cut(s)	585, 711
Cfr13I	GGNCC	2 cut(s)	49, 50
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	102, 730
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	3 cut(s)	328, 494, 593
CviQI	GTAC	2 cut(s)	102, 730
DdeI	CTNAG	1 cut(s)	297
DinI	GGCGCC	2 cut(s)	584, 710
DpnI	GATC	5 cut(s)	5, 9, 641, 717, 777
DpnII	GATC	5 cut(s)	3, 7, 639, 715, 775
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	4 cut(s)	369, 375, 668, 720
EarI	CTCTTC	4 cut(s)	369, 375, 668, 720
Eco130I	CCWWGG	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	2 cut(s)	584, 710
EheI	GGCGCC	2 cut(s)	584, 710
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	3 cut(s)	331, 497, 596
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	3 cut(s)	327, 493, 592
FauI	CCCGC	1 cut(s)	521
FauNDI	CATATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	6 cut(s)	113, 125, 213, 216, 219, 782
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	113, 125, 213, 216, 219, 782
FspBI	CTAG	2 cut(s)	74, 608
GlaI	GCGC	2 cut(s)	584, 710
GluI	GCNGC	6 cut(s)	113, 125, 213, 216, 219, 782
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	2 cut(s)	586, 712
HaeIII	GGCC	3 cut(s)	51, 266, 392
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	2 cut(s)	585, 711
Hin1I	GRCGYC	2 cut(s)	583, 709
Hin1II	CATG	3 cut(s)	331, 497, 596
Hin6I	GCGC	2 cut(s)	583, 709
HinP1I	GCGC	2 cut(s)	583, 709
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	488
HpaII	CCGG	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	235, 614, 700
Hpy188III	TCNNGA	5 cut(s)	11, 152, 328, 506, 719
Hpy8I	GTNNAC	3 cut(s)	235, 614, 700
HpyAV	CCTTC	2 cut(s)	133, 737
HpyCH4III	ACNGT	3 cut(s)	28, 106, 539
HpyCH4IV	ACGT	2 cut(s)	370, 550
HpyCH4V	TGCA	4 cut(s)	119, 197, 218, 781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	121, 218, 487, 525, 589, 598, 790
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	370, 550
Hsp92I	GRCGYC	2 cut(s)	583, 709
Hsp92II	CATG	3 cut(s)	331, 497, 596
HspAI	GCGC	2 cut(s)	583, 709
KasI	GGCGCC	2 cut(s)	582, 708
Kzo9I	GATC	5 cut(s)	3, 7, 639, 715, 775
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	5 cut(s)	124, 199, 202, 230, 793
MaeI	CTAG	2 cut(s)	74, 608
MaeII	ACGT	2 cut(s)	370, 550
MaeIII	GTNAC	2 cut(s)	539, 746
MalI	GATC	5 cut(s)	5, 9, 641, 717, 777
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	5 cut(s)	3, 7, 639, 715, 775
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	7 cut(s)	238, 249, 278, 357, 440, 509, 532
Mly113I	GGCGCC	2 cut(s)	583, 709
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	61, 159, 256, 292, 370, 646, 669
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	3 cut(s)	242, 573, 799
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	1 cut(s)	713
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	7 cut(s)	121, 218, 487, 525, 589, 598, 790
NarI	GGCGCC	2 cut(s)	583, 709
NciI	CCSGG	1 cut(s)	713
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	3, 7, 639, 715, 775
NlaIII	CATG	3 cut(s)	331, 497, 596
NlaIV	GGNNCC	3 cut(s)	51, 584, 710
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	629
PkrI	GCNGC	6 cut(s)	114, 126, 214, 217, 220, 783
PluTI	GGCGCC	2 cut(s)	586, 712
PspN4I	GGNNCC	3 cut(s)	51, 584, 710
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	49, 50
PstI	CTGCAG	2 cut(s)	220, 783
PstNI	CAGNNNCTG	2 cut(s)	543, 793
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	2 cut(s)	103, 731
RsaNI	GTAC	2 cut(s)	102, 730
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	242, 573, 799
SatI	GCNGC	6 cut(s)	113, 125, 213, 216, 219, 782
Sau3AI	GATC	5 cut(s)	3, 7, 639, 715, 775
Sau96I	GGNCC	2 cut(s)	49, 50
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	1 cut(s)	53
SfcI	CTRYAG	2 cut(s)	216, 779
SfoI	GGCGCC	2 cut(s)	584, 710
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	7 cut(s)	238, 249, 278, 357, 440, 509, 532
SsiI	CCGC	2 cut(s)	124, 528
SspDI	GGCGCC	2 cut(s)	582, 708
SspMI	CTAG	2 cut(s)	74, 608
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	28, 106, 539
TaiI	ACGT	2 cut(s)	373, 553
TaqI	TCGA	1 cut(s)	6
TasI	AATT	7 cut(s)	238, 249, 278, 357, 440, 509, 532
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	242, 573, 799
Tru9I	TTAA	3 cut(s)	242, 573, 799
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	5 cut(s)	112, 212, 215, 218, 781
TspDTI	ATGAA	5 cut(s)	69, 344, 366, 429, 482
TspRI	CASTG	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	509
XmaJI	CCTAGG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	2 cut(s)	74, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.