pycom01g22950

splicing factor 3A subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
20392906 .. 20397155
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22950.6

Sequence Viewer

Length: 1461 bp
ATGTCGTCGACGCTGCTGGAGCAGACACGTGCAGCTCACGAGGAGGTGGAGCGGCTGGAGCGGCTGATAGTGAAGGACTTCATGAACGAGCCGCCGTCCAGCAAGGACCGCTTGTACCAGGGCCACCGCGTCCGCCAGCTGATCGATACCATCACCTCCACCACCGAAAAACTTATTGAGATCGATCAAGATAAAGATAATGCGAGGAAGGACGAGATTGCGGCTCTCGGAGGCCAGACTGCCACTGGCACCAACGTTTTCAGCGCATTTTATGATAGATTGAAAGAGATTCGTGAGTATCACCGAAAGCATCCAGTTGCTCGGGTTGTTGATGCTAATGAGGAAGAAGAAGCACTGCTTAAGGAGGAACCTCAAATCGAGTTCAGTGGAGAGGAAGCTTTTGGACGATACCTTGACTTGCATGAACTATACAACCAGTATATTAATTCCAAATTTGGAGAACCTATTGAGTACTCTGCTTACCTCGATACTATTTCACAACCACAAAAGATTCCTCACAAACTGAAGTCGTCAAGGCAGTACAGGGAATATATGGAAAATCTACTCGCATATCTGATATATTTTTTCCAGAGGACAGAACCTTTGCAAGATCTTGACAGGATATTTTTGAAGGTTGAAACTGAATTTGAAGAGCAATGGGTAGATGGTAAGGTTAAAGGATGGGAAAATGAGAAGCAAGAAAATGGGCATGTTCAAGATCGACCTACTATGATCGATCTTGATTATTATAGCACAGTGGAAGAACTTATGGAAGTGGGTCCTGAAAAGCTAAAGGAGGCACTAGCATCATTAGGACTGAAGACGGGTGGTACTGTTCAGCAGCGTGCAGAGAGGCTTTTCCTTACAAAGGACACACCTCTGGAGAAGTTGGACAAGAAACATTTTGCCAAAGGTTCGCGTGGTGCTGAACAAAATGGGGCTGCTGCAGCTCCACAACAAGCTATTGAAAGAACAAGAGACAACATCATGAAGAAACAGGCTTTGACGTATGAAGAAATTGAAGCAGAGCGTGAAGAGGAGGAGACACAGGCCGATACTGAAAGTGACGATGATGAACAACAGATTTACAATCCACTGAAATTGCCAATGGGTTGGGATGGGAAGCCCATTCCGTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGTGAGATTTGCGGGAATTACAGTTACTGGGGACGTAGAGCTTTCGAGAGACATTTTAAGGAATGGCGCCATCAGCATGGTATGCGTTGCCTTGGCATACCGAACACCAAGAACTTCAATGAGATCACATCAATTGAGGAAGCTAAAGAACTCTGGAAGAGGATACAAGCACGACAAGGCGTGAACAAGTGGCGCCCGGATCTTGAAGAAGAGTACGAAGACAGAGAGGGTAACATATACAATAAGAAGACATACACCGATCTGCAGCGACAGGGACTGATTTAA

Protein Analysis

487

Amino Acids

57.15

Weight (kDa)

5.16

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 248, 1242, 1368
AccBSI CCGCTC 2 cut(s) 52, 61
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 129, 919
AciI CCGC 8 cut(s) 52, 61, 92, 109, 127, 133, 221, 1188
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 1383
AcsI RAATTY 3 cut(s) 452, 644, 1169
AcuI CTGAAG 2 cut(s) 545, 839
AcvI CACGTG 1 cut(s) 29
AcyI GRCGYC 2 cut(s) 1243, 1369
AfaI GTAC 6 cut(s) 116, 473, 542, 832, 1136, 1391
AfiI CCNNNNNNNGG 1 cut(s) 868
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 9 cut(s) 35, 139, 398, 790, 950, 962, 1150, 1217, 1319
AluI AGCT 9 cut(s) 35, 139, 398, 790, 950, 962, 1150, 1217, 1319
Alw26I GTCTC 3 cut(s) 972, 1037, 1219
AlwI GGATC 1 cut(s) 1383
AlwNI CAGNNNCTG 2 cut(s) 1203, 1453
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 3 cut(s) 121, 232, 1050
ApeKI GCWGC 7 cut(s) 13, 32, 841, 941, 944, 947, 1441
ApoI RAATTY 3 cut(s) 452, 644, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 586, 618
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 3 cut(s) 266, 1245, 1371
AspS9I GGNCC 3 cut(s) 106, 121, 779
AsuC2I CCSGG 1 cut(s) 1373
AsuHPI GGTGA 2 cut(s) 145, 293
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 2 cut(s) 106, 779
BanI GGYRCC 3 cut(s) 248, 1242, 1368
BauI CACGAG 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 29
BbsI GAAGAC 3 cut(s) 827, 1401, 1430
BbvI GCAGC 6 cut(s) 44, 853, 928, 931, 959, 1453
BccI CCATC 5 cut(s) 158, 659, 675, 1112, 1254
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 1 cut(s) 1332
BcnI CCSGG 1 cut(s) 1373
BcoDI GTCTC 3 cut(s) 972, 1037, 1219
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 2 cut(s) 945, 1439
BfoI RGCGCY 2 cut(s) 1246, 1372
BfrI CTTAAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 1332
BglII AGATCT 1 cut(s) 610
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 119, 1373
Bme18I GGWCC 2 cut(s) 106, 779
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 3 cut(s) 106, 121, 779
BmiI GGNNCC 5 cut(s) 250, 369, 780, 1244, 1370
BmrFI CCNGG 2 cut(s) 119, 1373
BmrI ACTGGG 1 cut(s) 1213
BmsI GCATC 3 cut(s) 319, 322, 815
BmuI ACTGGG 1 cut(s) 1213
BpiI GAAGAC 3 cut(s) 827, 1401, 1430
BpmI CTGGAG 3 cut(s) 38, 77, 902
BpuMI CCSGG 1 cut(s) 1373
Bsa29I ATCGAT 3 cut(s) 144, 183, 735
BsaAI YACGTR 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 1243, 1369
BsaJI CCNNGG 2 cut(s) 118, 1267
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse1I ACTGG 5 cut(s) 250, 314, 436, 1142, 1208
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 3 cut(s) 144, 183, 735
BseDI CCNNGG 2 cut(s) 118, 1267
BseGI GGATG 3 cut(s) 310, 686, 1123
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 662
BseNI ACTGG 5 cut(s) 250, 314, 436, 1142, 1208
BseRI GAGGAG 3 cut(s) 56, 1052, 1055
BseXI GCAGC 6 cut(s) 44, 853, 928, 931, 959, 1453
BsgI GTGCAG 2 cut(s) 51, 867
Bsh1236I CGCG 2 cut(s) 129, 919
BshFI GGCC 3 cut(s) 123, 234, 1052
BshNI GGYRCC 3 cut(s) 248, 1242, 1368
BshVI ATCGAT 3 cut(s) 144, 183, 735
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 1373
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 3 cut(s) 972, 1037, 1219
BsmFI GGGAC 1 cut(s) 1221
BsnI GGCC 3 cut(s) 123, 234, 1052
BsoBI CYCGRG 1 cut(s) 321
BspACI CCGC 8 cut(s) 52, 61, 92, 109, 127, 133, 221, 1188
BspANI GGCC 3 cut(s) 123, 234, 1052
BspDI ATCGAT 3 cut(s) 144, 183, 735
BspFNI CGCG 2 cut(s) 129, 919
BspHI TCATGA 2 cut(s) 81, 987
BspLI GGNNCC 5 cut(s) 250, 369, 780, 1244, 1370
BspMAI CTGCAG 2 cut(s) 949, 1443
BspPI GGATC 1 cut(s) 1383
BspQI GCTCTTC 1 cut(s) 645
BspT107I GGYRCC 3 cut(s) 248, 1242, 1368
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 2 cut(s) 52, 61
BsrDI GCAATG 1 cut(s) 662
BsrI ACTGG 5 cut(s) 250, 314, 436, 1142, 1208
BssECI CCNNGG 2 cut(s) 118, 1267
BssNI GRCGYC 2 cut(s) 1243, 1369
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 1267
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 757, 835, 1199
Bst6I CTCTTC 4 cut(s) 645, 1029, 1328, 1380
BstACI GRCGYC 2 cut(s) 1243, 1369
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 1258
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 137, 846
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 3 cut(s) 310, 686, 1123
BstFNI CGCG 2 cut(s) 129, 919
BstH2I RGCGCY 2 cut(s) 1246, 1372
BstHHI GCGC 3 cut(s) 266, 1245, 1371
BstMAI GTCTC 3 cut(s) 972, 1037, 1219
BstMWI GCNNNNNNNGC 8 cut(s) 19, 58, 61, 108, 947, 1147, 1249, 1258
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 117, 1371
BstSFI CTRYAG 2 cut(s) 945, 1439
BstUI CGCG 2 cut(s) 129, 919
BstV1I GCAGC 6 cut(s) 44, 853, 928, 931, 959, 1453
BstV2I GAAGAC 3 cut(s) 827, 1401, 1430
BstX2I RGATCY 2 cut(s) 610, 1375
BstXI CCANNNNNNTGG 2 cut(s) 1113, 1253
BstYI RGATCY 2 cut(s) 610, 1375
Bsu15I ATCGAT 3 cut(s) 144, 183, 735
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 3 cut(s) 123, 234, 1052
BsuTUI ATCGAT 3 cut(s) 144, 183, 735
BtsCI GGATG 3 cut(s) 310, 686, 1123
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 5 cut(s) 243, 353, 391, 762, 1094
Cac8I GCNNGC 2 cut(s) 137, 846
CaiI CAGNNNCTG 2 cut(s) 1203, 1453
CciI TCATGA 2 cut(s) 81, 987
CfoI GCGC 3 cut(s) 266, 1245, 1371
Cfr13I GGNCC 3 cut(s) 106, 121, 779
ClaI ATCGAT 3 cut(s) 144, 183, 735
CseI GACGC 2 cut(s) 19, 118
Csp6I GTAC 6 cut(s) 115, 472, 541, 831, 1135, 1390
CspCI CAANNNNNGTGG 2 cut(s) 1083, 1118
CviAII CATG 6 cut(s) 82, 422, 710, 988, 1154, 1253
CviQI GTAC 6 cut(s) 115, 472, 541, 831, 1135, 1390
DinI GGCGCC 2 cut(s) 1244, 1370
Eam1104I CTCTTC 4 cut(s) 645, 1029, 1328, 1380
EarI CTCTTC 4 cut(s) 645, 1029, 1328, 1380
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 1267
Eco47I GGWCC 2 cut(s) 106, 779
Eco57I CTGAAG 2 cut(s) 545, 839
Eco72I CACGTG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 1169
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 1267
EgeI GGCGCC 2 cut(s) 1244, 1370
EheI GGCGCC 2 cut(s) 1244, 1370
ErhI CCWWGG 1 cut(s) 1267
FaeI CATG 6 cut(s) 85, 425, 713, 991, 1157, 1256
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 342, 374
FaqI GGGAC 1 cut(s) 1221
FatI CATG 6 cut(s) 81, 421, 709, 987, 1153, 1252
FauI CCCGC 1 cut(s) 1181
FblI GTMKAC 1 cut(s) 8
FokI GGATG 3 cut(s) 297, 693, 1130
FspBI CTAG 1 cut(s) 803
GlaI GCGC 3 cut(s) 265, 1244, 1370
GsuI CTGGAG 3 cut(s) 38, 77, 902
HaeII RGCGCY 2 cut(s) 1246, 1372
HaeIII GGCC 3 cut(s) 123, 234, 1052
HapII CCGG 1 cut(s) 1373
HgaI GACGC 2 cut(s) 19, 118
HhaI GCGC 3 cut(s) 266, 1245, 1371
Hin1I GRCGYC 2 cut(s) 1243, 1369
Hin1II CATG 6 cut(s) 85, 425, 713, 991, 1157, 1256
Hin6I GCGC 3 cut(s) 264, 1243, 1369
HinP1I GCGC 3 cut(s) 264, 1243, 1369
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 2 cut(s) 396, 1148
HinfI GANTC 2 cut(s) 289, 511
HpaII CCGG 1 cut(s) 1373
HphI GGTGA 2 cut(s) 145, 293
Hpy166II GTNNAC 2 cut(s) 9, 1360
Hpy188I TCNGA 2 cut(s) 230, 576
Hpy8I GTNNAC 2 cut(s) 9, 1360
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 3 cut(s) 67, 202, 625
HpyCH4III ACNGT 3 cut(s) 757, 835, 1199
HpyCH4IV ACGT 4 cut(s) 28, 255, 1007, 1210
HpyCH4V TGCA 6 cut(s) 32, 421, 607, 848, 947, 1441
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 58, 61, 108, 947, 1147, 1249, 1258
HpySE526I ACGT 4 cut(s) 28, 255, 1007, 1210
Hsp92I GRCGYC 2 cut(s) 1243, 1369
Hsp92II CATG 6 cut(s) 85, 425, 713, 991, 1157, 1256
HspAI GCGC 3 cut(s) 264, 1243, 1369
KasI GGCGCC 2 cut(s) 1242, 1368
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 4 cut(s) 19, 49, 58, 955
Lsp1109I GCAGC 6 cut(s) 44, 853, 928, 931, 959, 1453
LweI GCATC 3 cut(s) 319, 322, 815
MaeI CTAG 1 cut(s) 803
MaeII ACGT 4 cut(s) 28, 255, 1007, 1210
MaeIII GTNAC 3 cut(s) 1064, 1199, 1406
MbiI CCGCTC 2 cut(s) 52, 61
MfeI CAATTG 1 cut(s) 1308
MflI RGATCY 2 cut(s) 610, 1375
MluCI AATT 8 cut(s) 445, 452, 644, 1017, 1100, 1169, 1192, 1308
Mly113I GGCGCC 2 cut(s) 1243, 1369
MmeI TCCRAC 1 cut(s) 870
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 5 cut(s) 360, 444, 675, 1233, 1459
MslI CAYNNNNRTG 1 cut(s) 1251
MspA1I CMGCKG 1 cut(s) 139
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 1373
MspR9I CCNGG 2 cut(s) 119, 1373
MunI CAATTG 1 cut(s) 1308
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 129, 919
MwoI GCNNNNNNNGC 8 cut(s) 19, 58, 61, 108, 947, 1147, 1249, 1258
NarI GGCGCC 2 cut(s) 1243, 1369
NciI CCSGG 1 cut(s) 1373
NlaIII CATG 6 cut(s) 85, 425, 713, 991, 1157, 1256
NlaIV GGNNCC 5 cut(s) 250, 369, 780, 1244, 1370
NmuCI GTSAC 1 cut(s) 1064
NspI RCATGY 1 cut(s) 713
PagI TCATGA 2 cut(s) 81, 987
PciSI GCTCTTC 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 289, 511
PluTI GGCGCC 2 cut(s) 1246, 1372
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 444
Psp1406I AACGTT 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 5 cut(s) 250, 369, 780, 1244, 1370
PspPI GGNCC 3 cut(s) 106, 121, 779
PspPPI RGGWCCY 1 cut(s) 779
PstI CTGCAG 2 cut(s) 949, 1443
PstNI CAGNNNCTG 2 cut(s) 1203, 1453
PsuI RGATCY 2 cut(s) 610, 1375
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 6 cut(s) 116, 473, 542, 832, 1136, 1391
RsaNI GTAC 6 cut(s) 115, 472, 541, 831, 1135, 1390
RseI CAYNNNNRTG 1 cut(s) 1251
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 5 cut(s) 360, 444, 675, 1233, 1459
Sau96I GGNCC 3 cut(s) 106, 121, 779
ScaI AGTACT 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 119, 1373
SfaNI GCATC 3 cut(s) 319, 322, 815
SfcI CTRYAG 2 cut(s) 945, 1439
SfoI GGCGCC 2 cut(s) 1244, 1370
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 2 cut(s) 106, 779
SmiMI CAYNNNNRTG 1 cut(s) 1251
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 8 cut(s) 445, 452, 644, 1017, 1100, 1169, 1192, 1308
SsiI CCGC 8 cut(s) 52, 61, 92, 109, 127, 133, 221, 1188
SspDI GGCGCC 2 cut(s) 1242, 1368
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 2 cut(s) 117, 1371
StyI CCWWGG 1 cut(s) 1267
TaaI ACNGT 3 cut(s) 757, 835, 1199
TaiI ACGT 4 cut(s) 31, 258, 1010, 1213
TaqI TCGA 8 cut(s) 8, 144, 183, 378, 486, 721, 735, 1221
TasI AATT 8 cut(s) 445, 452, 644, 1017, 1100, 1169, 1192, 1308
TatI WGTACW 2 cut(s) 471, 540
TauI GCSGC 4 cut(s) 55, 64, 94, 224
TfiI GAWTC 2 cut(s) 289, 511
Tru1I TTAA 5 cut(s) 360, 444, 675, 1233, 1459
Tru9I TTAA 5 cut(s) 360, 444, 675, 1233, 1459
TscAI CASTG 5 cut(s) 250, 360, 391, 762, 1101
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 7 cut(s) 13, 32, 841, 941, 944, 947, 1441
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 7 cut(s) 70, 98, 438, 1004, 1026, 1089, 1142
TspGWI ACGGA 1 cut(s) 1122
TspRI CASTG 5 cut(s) 250, 360, 391, 762, 1101
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 106, 779
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 866
XapI RAATTY 3 cut(s) 452, 644, 1169
XceI RCATGY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 803
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.