Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Reverse (-)

21953829 .. 21957668

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGTCGTCGACGCTACTGGAGGTGACGCGTGGCGCTCACGAGGAGGTGGAGCGCTTGGAGCGTCTGATAGTGAAGGACTTACAGAACGAGCCGGCGAGCAGCAAGGAACGCTTGGCTCAGAGCCACCGTGTCCGCCTCATGATCGACACCGTCACCTCCACCACAGAAAGACTCATTGAGATCTATGAGGATAACGATAATGCGAGGAAGGACGAGATTGCGGCTCTCGGAGGCCAAACTGCCACCGGCACCAATGTGTTCAGTGCATTCTATGATAGATTGAAAGAGATCCGTGAGTACCATAGGAGACATCCAGCTGCACTAGTTGTCGATCCTAATGAGGAACATGAAGCCCTGCTCAAGGAGGAGCCTCAAGTAGAGTTCAGTGGAGAGGAAGTTTATGGACGATACTTGGATTTACATGAACTGTACAATCAGTATATCAATTCTAAATTTGGAGAGCCCATTGAGTACTCTGCTTATCTTGATGTTTTTTCACAACCACATAAGATTCCTCGGAAGCTCAAGTCTACAAGGCAGTACAGGGAATATCTTGAAAATCTAGTTCAGTATCTGGTATATTTCTTCCACCGGACAGAGCCATTGCAAGATCTTGATAGAATATTCGCAAAGGTTGAAACTGAATTTGAAGAACAATGGGCAGATGGTAAGGTAGAGGAATGGGAAAATGCGATTCAGGATGGTGAACATGTTCAAGATCAGCAGACTGTTATTGATCTTGACTATTTTAGCACAGTGGAAGAACTGGTGGAATTGGGTCCTGAAAAGCTAAAGGAGGCATTGGCTTCGTTAGGACTGAAGATAGGGGGTACCGTTCAGCAACGTGCAGAGAGGCTTTTACTTACAAAGGATACACCTCTGGAAAAGTTGGACAAGAAGCATTTTGCCAAAGGGTCACGTGGTTCAGCACAGAATGGGGCTGCTGTAGCTCCACAGCAAGTTGGCATGTTAATAGAAATTGCTCTCTTGGAAGCCAAATTGAAAAAACTATGCGACTTACTGAGTGAGGCTATTGAACGAACAAAAGACAACATTGTTAAGAAACAGGCTTTGACATATGAAGAAATTGCAGCAGAACGTGAGGATGAAGAGACACAGGCTGATACTGAAAGTGATGACGATGAGCAGCAGATTTATAATCCACTCAAATTGCCAATGGGTTGGGATGGGAAGCCGATACCTTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGTGAGATATGTGGGAATCAGAGTTACTGGGGGCGTAGAGCTTTTGAGCGGCATTTTAAGGAATGGCGCCATCAGCATGGAATGCGTTGCCTTGGCATACCAAACACCAAGAACTTCAATGAGATCACATCAATTGAGGAAGCACAAGAATTGTGGAAGAGGATACAAGCACGGCAAGGGGTGAACAAGTGGCGCCCAGACCTTGAAGAAGAGTATGAAGACAGAGAGGGCAACATCTATAATAAAAAGACATATACTGATCTCCAGCGACAGGGACTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

509

Amino Acids

59.36

Weight (kDa)

5.07

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3a60_bindingd	PF12108	80 - 105	4.3e-12	Splicing factor SF3a60 binding domain
SF3A3	PF16837	127 - 175	3.5e-18	Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
SDE2_2C	PF13297	224 - 304	2.1e-27	Replication stress response SDE2 C-terminal
SF3a60_Prp9_C	PF11931	390 - 509	3.3e-57	SF3a60/Prp9 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1158
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	4 cut(s)	248, 830, 1311, 1437
AccBSI	CCGCTC	1 cut(s)	1294
AccI	GTMKAC	2 cut(s)	8, 530
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	133, 221, 1294
AclWI	GGATC	2 cut(s)	283, 326
AcsI	RAATTY	3 cut(s)	452, 644, 1238
AcuI	CTGAAG	1 cut(s)	839
AcvI	CACGTG	1 cut(s)	920
AcyI	GRCGYC	2 cut(s)	1312, 1438
AfaI	GTAC	5 cut(s)	299, 431, 473, 542, 832
AfeI	AGCGCT	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	361, 1516
AflIII	ACRYGT	2 cut(s)	26, 709
AhlI	ACTAGT	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	6 cut(s)	317, 523, 790, 950, 1219, 1286
AluI	AGCT	6 cut(s)	317, 523, 790, 950, 1219, 1286
Alw26I	GTCTC	2 cut(s)	301, 1106
AlwI	GGATC	2 cut(s)	283, 326
AlwNI	CAGNNNCTG	1 cut(s)	574
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	99, 317, 941, 1091, 1147
ApoI	RAATTY	3 cut(s)	452, 644, 1238
Asp700I	GAANNNNTTC	1 cut(s)	711
Asp718I	GGTACC	1 cut(s)	830
AspLEI	GCGC	4 cut(s)	35, 54, 1314, 1440
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	4 cut(s)	34, 145, 716, 1438
AvaII	GGWCC	1 cut(s)	779
BanI	GGYRCC	4 cut(s)	248, 830, 1311, 1437
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	920
BbsI	GAAGAC	1 cut(s)	1470
BbvI	GCAGC	5 cut(s)	111, 304, 928, 1103, 1159
BccI	CCATC	4 cut(s)	659, 695, 1181, 1323
BceAI	ACGGC	1 cut(s)	1433
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciVI	GTATCC	2 cut(s)	865, 1401
BcoDI	GTCTC	2 cut(s)	301, 1106
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	2 cut(s)	323, 563
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	4 cut(s)	36, 55, 1315, 1441
BfuI	GTATCC	2 cut(s)	865, 1401
BglII	AGATCT	2 cut(s)	180, 610
BisI	GCNGC	7 cut(s)	100, 222, 318, 942, 1092, 1148, 1295
BlsI	GCNGC	7 cut(s)	101, 223, 319, 943, 1093, 1149, 1296
BmcAI	AGTACT	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	6 cut(s)	250, 369, 780, 832, 1313, 1439
BmrI	ACTGGG	1 cut(s)	1282
BmuI	ACTGGG	1 cut(s)	1282
BpiI	GAAGAC	1 cut(s)	1470
BpmI	CTGGAG	2 cut(s)	38, 1493
BpuEI	CTTGAG	3 cut(s)	344, 357, 509
BsaAI	YACGTR	1 cut(s)	920
BsaHI	GRCGYC	2 cut(s)	1312, 1438
BsaJI	CCNNGG	2 cut(s)	515, 1336
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 1516
Bse118I	RCCGGY	2 cut(s)	91, 245
Bse1I	ACTGG	4 cut(s)	21, 771, 1211, 1277
Bse3DI	GCAATG	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	515, 1336
BseGI	GGATG	4 cut(s)	310, 706, 1111, 1192
BseLI	CCNNNNNNNGG	2 cut(s)	361, 1516
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	131, 1013
BseNI	ACTGG	4 cut(s)	21, 771, 1211, 1277
BseRI	GAGGAG	2 cut(s)	56, 380
BseXI	GCAGC	5 cut(s)	111, 304, 928, 1103, 1159
BsgI	GTGCAG	2 cut(s)	303, 867
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	4 cut(s)	248, 830, 1311, 1437
BsiSI	CCGG	3 cut(s)	92, 246, 592
BslI	CCNNNNNNNGG	2 cut(s)	361, 1516
BsmAI	GTCTC	2 cut(s)	301, 1106
BsmI	GAATGC	2 cut(s)	266, 1332
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
BspACI	CCGC	3 cut(s)	133, 221, 1294
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	130, 1014
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	6 cut(s)	250, 369, 780, 832, 1313, 1439
BspPI	GGATC	2 cut(s)	283, 326
BspT107I	GGYRCC	4 cut(s)	248, 830, 1311, 1437
BsrBI	CCGCTC	1 cut(s)	1294
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	2 cut(s)	91, 245
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	21, 771, 1211, 1277
BssAI	RCCGGY	2 cut(s)	91, 245
BssECI	CCNNGG	2 cut(s)	515, 1336
BssMI	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
BssNI	GRCGYC	2 cut(s)	1312, 1438
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	1336
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	6 cut(s)	128, 151, 429, 730, 757, 835
Bst6I	CTCTTC	3 cut(s)	1104, 1397, 1449
BstACI	GRCGYC	2 cut(s)	1312, 1438
BstAPI	GCANNNNNTGC	1 cut(s)	1327
BstAUI	TGTACA	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	2 cut(s)	93, 97
BstDEI	CTNAG	2 cut(s)	117, 1022
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	4 cut(s)	310, 706, 1111, 1192
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	4 cut(s)	36, 55, 1315, 1441
BstHHI	GCGC	4 cut(s)	35, 54, 1314, 1440
BstKTI	GATC	9 cut(s)	144, 183, 291, 334, 613, 721, 739, 1371, 1507
BstMAI	GTCTC	2 cut(s)	301, 1106
BstMBI	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 108, 947, 1216, 1318, 1327
BstNSI	RCATGY	2 cut(s)	713, 970
BstSFI	CTRYAG	1 cut(s)	945
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	5 cut(s)	111, 304, 928, 1103, 1159
BstV2I	GAAGAC	1 cut(s)	1470
BstX2I	RGATCY	3 cut(s)	180, 288, 610
BstXI	CCANNNNNNTGG	2 cut(s)	1182, 1322
BstYI	RGATCY	3 cut(s)	180, 288, 610
BsuI	GTATCC	2 cut(s)	865, 1401
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	310, 706, 1111, 1192
BtsIMutI	CAGTG	3 cut(s)	268, 391, 762
Cac8I	GCNNGC	2 cut(s)	93, 97
CaiI	CAGNNNCTG	1 cut(s)	574
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	4 cut(s)	35, 54, 1314, 1440
Cfr10I	RCCGGY	2 cut(s)	91, 245
Cfr13I	GGNCC	1 cut(s)	779
CseI	GACGC	3 cut(s)	19, 34, 50
Csp6I	GTAC	5 cut(s)	298, 430, 472, 541, 831
CspCI	CAANNNNNGTGG	4 cut(s)	1152, 1187, 1379, 1414
CviAII	CATG	7 cut(s)	139, 347, 422, 710, 967, 1223, 1322
CviQI	GTAC	5 cut(s)	298, 430, 472, 541, 831
DdeI	CTNAG	2 cut(s)	117, 1022
DinI	GGCGCC	2 cut(s)	1313, 1439
DpnI	GATC	9 cut(s)	143, 182, 290, 333, 612, 720, 738, 1370, 1506
DpnII	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
Eam1104I	CTCTTC	3 cut(s)	1104, 1397, 1449
EarI	CTCTTC	3 cut(s)	1104, 1397, 1449
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	1336
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	779
Eco47III	AGCGCT	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	839
Eco72I	CACGTG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	1238
EcoT14I	CCWWGG	1 cut(s)	1336
EcoT38I	GRGCYC	1 cut(s)	465
EgeI	GGCGCC	2 cut(s)	1313, 1439
EheI	GGCGCC	2 cut(s)	1313, 1439
ErhI	CCWWGG	1 cut(s)	1336
FaeI	CATG	7 cut(s)	142, 350, 425, 713, 970, 1226, 1325
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	7 cut(s)	138, 346, 421, 709, 966, 1222, 1321
FauNDI	CATATG	1 cut(s)	1078
FblI	GTMKAC	2 cut(s)	8, 530
Fnu4HI	GCNGC	7 cut(s)	100, 222, 318, 942, 1092, 1148, 1295
FokI	GGATG	4 cut(s)	297, 713, 1118, 1199
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	7 cut(s)	100, 222, 318, 942, 1092, 1148, 1295
FspBI	CTAG	2 cut(s)	323, 563
GlaI	GCGC	4 cut(s)	34, 53, 1313, 1439
GluI	GCNGC	7 cut(s)	100, 222, 318, 942, 1092, 1148, 1295
GsuI	CTGGAG	2 cut(s)	38, 1493
HaeII	RGCGCY	4 cut(s)	36, 55, 1315, 1441
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	3 cut(s)	92, 246, 592
HgaI	GACGC	3 cut(s)	19, 34, 50
HhaI	GCGC	4 cut(s)	35, 54, 1314, 1440
Hin1I	GRCGYC	2 cut(s)	1312, 1438
Hin1II	CATG	7 cut(s)	142, 350, 425, 713, 970, 1226, 1325
Hin6I	GCGC	4 cut(s)	33, 52, 1312, 1438
HinP1I	GCGC	4 cut(s)	33, 52, 1312, 1438
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	1217
HinfI	GANTC	4 cut(s)	171, 511, 694, 1261
HpaII	CCGG	3 cut(s)	92, 246, 592
HphI	GGTGA	4 cut(s)	34, 145, 716, 1438
Hpy166II	GTNNAC	4 cut(s)	9, 531, 707, 1429
Hpy188I	TCNGA	5 cut(s)	66, 120, 230, 519, 1266
Hpy8I	GTNNAC	4 cut(s)	9, 531, 707, 1429
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	67, 202
HpyCH4III	ACNGT	6 cut(s)	128, 151, 429, 730, 757, 835
HpyCH4IV	ACGT	3 cut(s)	844, 919, 1099
HpyCH4V	TGCA	5 cut(s)	266, 320, 607, 848, 1091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 108, 947, 1216, 1318, 1327
HpyF3I	CTNAG	2 cut(s)	117, 1022
HpySE526I	ACGT	3 cut(s)	844, 919, 1099
Hsp92I	GRCGYC	2 cut(s)	1312, 1438
Hsp92II	CATG	7 cut(s)	142, 350, 425, 713, 970, 1226, 1325
HspAI	GCGC	4 cut(s)	33, 52, 1312, 1438
KasI	GGCGCC	2 cut(s)	1311, 1437
KpnI	GGTACC	1 cut(s)	834
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
LmnI	GCTCC	4 cut(s)	49, 58, 367, 955
Lsp1109I	GCAGC	5 cut(s)	111, 304, 928, 1103, 1159
MaeI	CTAG	2 cut(s)	323, 563
MaeII	ACGT	3 cut(s)	844, 919, 1099
MaeIII	GTNAC	4 cut(s)	22, 151, 915, 1268
MalI	GATC	9 cut(s)	143, 182, 290, 333, 612, 720, 738, 1370, 1506
MbiI	CCGCTC	1 cut(s)	1294
MboI	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
MfeI	CAATTG	1 cut(s)	1377
MflI	RGATCY	3 cut(s)	180, 288, 610
MhlI	GDGCHC	1 cut(s)	465
MluI	ACGCGT	1 cut(s)	26
Mly113I	GGCGCC	2 cut(s)	1312, 1438
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	870
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	4 cut(s)	971, 1059, 1302, 1528
MslI	CAYNNNNRTG	2 cut(s)	254, 1320
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	3 cut(s)	92, 246, 592
MunI	CAATTG	1 cut(s)	1377
Mva1269I	GAATGC	2 cut(s)	266, 1332
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	6 cut(s)	58, 108, 947, 1216, 1318, 1327
NaeI	GCCGGC	1 cut(s)	93
NarI	GGCGCC	2 cut(s)	1312, 1438
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	7 cut(s)	142, 350, 425, 713, 970, 1226, 1325
NlaIV	GGNNCC	6 cut(s)	250, 369, 780, 832, 1313, 1439
NmuCI	GTSAC	3 cut(s)	22, 151, 915
NspI	RCATGY	2 cut(s)	713, 970
OliI	CACNNNNGTG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	138
PciI	ACATGT	1 cut(s)	709
PctI	GAATGC	2 cut(s)	266, 1332
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	511, 694, 1261
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	7 cut(s)	101, 223, 319, 943, 1093, 1149, 1296
PleI	GAGTC	1 cut(s)	165
PluTI	GGCGCC	2 cut(s)	1315, 1441
PmaCI	CACGTG	1 cut(s)	920
PmlI	CACGTG	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	920
PpuMI	RGGWCCY	1 cut(s)	779
PscI	ACATGT	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	1158
Psp5II	RGGWCCY	1 cut(s)	779
PspCI	CACGTG	1 cut(s)	920
PspN4I	GGNNCC	6 cut(s)	250, 369, 780, 832, 1313, 1439
PspPI	GGNCC	1 cut(s)	779
PspPPI	RGGWCCY	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	180, 288, 610
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	5 cut(s)	299, 431, 473, 542, 832
RsaNI	GTAC	5 cut(s)	298, 430, 472, 541, 831
RseI	CAYNNNNRTG	2 cut(s)	254, 1320
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	4 cut(s)	971, 1059, 1302, 1528
SatI	GCNGC	7 cut(s)	100, 222, 318, 942, 1092, 1148, 1295
Sau3AI	GATC	9 cut(s)	141, 180, 288, 331, 610, 718, 736, 1368, 1504
Sau96I	GGNCC	1 cut(s)	779
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	945
SfoI	GGCGCC	2 cut(s)	1313, 1439
SgrDI	CGTCGACG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	2 cut(s)	254, 1320
SmlI	CTYRAG	3 cut(s)	359, 372, 524
SmoI	CTYRAG	3 cut(s)	359, 372, 524
SpeI	ACTAGT	1 cut(s)	322
SsiI	CCGC	3 cut(s)	133, 221, 1294
SspDI	GGCGCC	2 cut(s)	1311, 1437
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	323, 563
StyI	CCWWGG	1 cut(s)	1336
TaaI	ACNGT	6 cut(s)	128, 151, 429, 730, 757, 835
TaiI	ACGT	3 cut(s)	847, 922, 1102
TaqI	TCGA	3 cut(s)	8, 144, 330
TatI	WGTACW	3 cut(s)	429, 471, 540
TauI	GCSGC	2 cut(s)	224, 1297
TfiI	GAWTC	3 cut(s)	511, 694, 1261
Tru1I	TTAA	4 cut(s)	971, 1059, 1302, 1528
Tru9I	TTAA	4 cut(s)	971, 1059, 1302, 1528
TscAI	CASTG	3 cut(s)	268, 391, 762
TseFI	GTSAC	3 cut(s)	22, 151, 915
TseI	GCWGC	5 cut(s)	99, 317, 941, 1091, 1147
Tsp45I	GTSAC	3 cut(s)	22, 151, 915
TspDTI	ATGAA	6 cut(s)	363, 438, 1095, 1122, 1211, 1476
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	268, 391, 762
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	779
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	452, 644, 1238
XceI	RCATGY	2 cut(s)	713, 970
XmiI	GTMKAC	2 cut(s)	8, 530
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	323, 563
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.