Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016350

Physical Location & Seq

Genomic Coordinates Reverse (-)

20251598 .. 20252023

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTCGAAGGCTGTGTTTCAAGTTTTCTTGGAACCCTCAGATTCAAAGATTGCGTGCAAGGTTGGGATATGAAGGGGTTTTCAGCATCATTAGCTTCATAGGAAGCAAGTGGGTGCAGGACTTAGTGAAGCCAGTTGATATCTGCCAACGTCCATTAACTTGTGGAAAACTGGGATTCTGCTCGAATCAGAGGCCGACGTGCATATGTCCAACAGGTTTCCATAATGGTGCTCAGGAGAATGATGCTTGTGTGCTAATAGAAGACACCATCTCTTTGCCTTCTTCTTGTAATGGAAGTGGAAATACCAGTGAGTTCAATTCCTCAACTGTTTATATAGAACTGCAAAAAGGCATGGAATACTTTGGTAATTACTTCAATCAGCCTGTGAAGCCAGTTGATATCTACCGTGTTCTTGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

7.5

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	8 - 75	2.7e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29231
malus_domestica	MD03G1019400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0342651 RchiOBHm_Chr3g0459441
rosa_laevigata	RLG00000003116 RLG00000011590 RLG00000014116 RLG00000025328
rosa_multiflora	Rmu_sc0001772.1_g000043 Rmu_sc0001772.1_g000072 Rmu_sc0013880.1_g000001
rosa_samantha	Rh5BG321700 Rh5CG198300 Rh7DG390400
rosa_wichuraiana	Rw7G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	22, 47, 319, 379
AjiI	CACGTC	1 cut(s)	201
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	289, 321
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	235
BccI	CCATC	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	96, 235
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	234
Bse1I	ACTGG	4 cut(s)	134, 177, 309, 395
BseMII	CTCAG	2 cut(s)	53, 248
BseNI	ACTGG	4 cut(s)	134, 177, 309, 395
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	52, 247
BspLI	GGNNCC	1 cut(s)	35
BsrI	ACTGG	4 cut(s)	134, 177, 309, 395
Bst4CI	ACNGT	2 cut(s)	331, 410
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	39, 124, 234
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 391
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	7 cut(s)	5, 13, 96, 133, 196, 385, 394
CviKI_1	RGCY	7 cut(s)	5, 13, 96, 133, 196, 385, 394
DdeI	CTNAG	3 cut(s)	39, 124, 234
Eco32I	GATATC	2 cut(s)	142, 403
EcoRV	GATATC	2 cut(s)	142, 403
FaeI	CATG	1 cut(s)	358
FaiI	YATR	8 cut(s)	72, 101, 206, 208, 225, 336, 338, 356
FatI	CATG	1 cut(s)	354
FauNDI	CATATG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	3 cut(s)	43, 177, 187
Hpy188I	TCNGA	2 cut(s)	42, 192
Hpy188III	TCNNGA	2 cut(s)	236, 416
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	3, 68, 291
HpyCH4III	ACNGT	2 cut(s)	331, 410
HpyCH4IV	ACGT	2 cut(s)	151, 200
HpyCH4V	TGCA	4 cut(s)	59, 118, 204, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 391
HpyF3I	CTNAG	3 cut(s)	39, 124, 234
HpySE526I	ACGT	2 cut(s)	151, 200
Hsp92II	CATG	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	104, 147, 158, 201, 221, 322, 399, 408
LweI	GCATC	2 cut(s)	96, 235
MaeII	ACGT	2 cut(s)	151, 200
MboII	GAAGA	2 cut(s)	275, 276
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	319, 370
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	3 cut(s)	48, 186, 334
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	93, 391
NdeI	CATATG	1 cut(s)	206
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	43, 177, 187
PspN4I	GGNNCC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	5 cut(s)	65, 98, 154, 203, 220
SfaNI	GCATC	2 cut(s)	96, 235
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	319, 370
TaaI	ACNGT	2 cut(s)	331, 410
TaiI	ACGT	2 cut(s)	154, 203
TaqI	TCGA	2 cut(s)	7, 185
TasI	AATT	2 cut(s)	319, 370
TfiI	GAWTC	3 cut(s)	43, 177, 187
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	87, 88
TspRI	CASTG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.