Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016350

Physical Location & Seq

Genomic Coordinates Reverse (-)

47525346 .. 47530086

Gene Structure 4741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGCGCTTACTTCCTCTTGCCAATCGTTGCTCTTCTCTTTCCTCTCCATGCCATCGCGGATGTTGGCGGCAGCGACCTTGTTTGGAAGCCCATAACTAACCTTAGTGATCCTCATGTGATTGAGGTTGGAAAGTTTGCGGTTGCCCAGAACCGCAAAAGGACTCACAAACTGTATCACTTCCGGACGATTGTTGGTGGTGATTCTGTGGCTAACTGGATTTTGGGAGTTATCTGTGATCTAAAATTGCCGGAGTTACCCTCCATTGCTGCAATTCCGCTGCGAACGAGTTCTCCTATTATTGATAGCATCTCAAGTTCCTTTGGATGGTTGTACTTGAAATTGTCCCTGCTAGATGTACAATATGCAAAAAAAATGAAAACTGACAGCTGGCATATTCTCATTGGGATGAAAACCACTAAAAGTTCTACAGCTAATCAACAAATACCTCATTCTTTGCATCTATGTCTTCCAGTTCATGAAGCTCATGTCAAAATGCGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGGATCCAAACTATTTATTCACTGGCTTCCTTCCATATTTGATGATTCAGCTAAATTAAAATTATGCTGGAGCTTAAAATTATCACAACCAAAGTTCGCAGCCAACCAAGCAAGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_acc DAGK_cat NB-ARC

Protein Analysis

239

Amino Acids

26.69

Weight (kDa)

9.7

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29231
malus_domestica	MD03G1019400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0342651 RchiOBHm_Chr3g0459441
rosa_laevigata	RLG00000003116 RLG00000011590 RLG00000014116 RLG00000025328
rosa_multiflora	Rmu_sc0001772.1_g000043 Rmu_sc0001772.1_g000072 Rmu_sc0013880.1_g000001
rosa_samantha	Rh5BG321700 Rh5CG198300 Rh7DG390400
rosa_wichuraiana	Rw7G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	5 cut(s)	59, 69, 140, 154, 278
AclWI	GGATC	3 cut(s)	104, 594, 607
AcoI	YGGCCR	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	2 cut(s)	335, 360
AfiI	CCNNNNNNNGG	3 cut(s)	327, 538, 552
AgsI	TTSAA	2 cut(s)	340, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AloI	GAACNNNNNNTCC	2 cut(s)	277, 309
AluBI	AGCT	5 cut(s)	390, 434, 485, 647, 669
AluI	AGCT	5 cut(s)	390, 434, 485, 647, 669
AlwI	GGATC	3 cut(s)	104, 594, 607
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	72, 269, 280, 695
Asp700I	GAANNNNTTC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	84, 256, 267, 707
BccI	CCATC	3 cut(s)	62, 321, 540
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	5 cut(s)	70, 73, 270, 281, 696
BlsI	GCNGC	5 cut(s)	71, 74, 271, 282, 697
BmiI	GGNNCC	1 cut(s)	601
BmsI	GCATC	3 cut(s)	318, 469, 551
BpiI	GAAGAC	1 cut(s)	461
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	685
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 538, 552
Bse1I	ACTGG	3 cut(s)	221, 473, 623
Bse3DI	GCAATG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	183
BseGI	GGATG	4 cut(s)	67, 332, 414, 542
BseLI	CCNNNNNNNGG	3 cut(s)	327, 538, 552
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	221, 473, 623
BseXI	GCAGC	4 cut(s)	84, 256, 267, 707
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	184, 251
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	327, 538, 552
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	109, 238, 500, 599
BspACI	CCGC	5 cut(s)	59, 69, 140, 154, 278
BspANI	GGCC	1 cut(s)	531
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	601
BspPI	GGATC	3 cut(s)	104, 594, 607
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	264
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	3 cut(s)	221, 473, 623
BssMI	GATC	4 cut(s)	109, 238, 500, 599
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	549
BstC8I	GCNNGC	3 cut(s)	392, 514, 709
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	4 cut(s)	67, 332, 414, 542
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	112, 241, 503, 602
BstMBI	GATC	4 cut(s)	109, 238, 500, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	84, 256, 267, 707
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	67, 332, 414, 542
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	3 cut(s)	392, 514, 709
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	334, 359
CviAII	CATG	5 cut(s)	50, 116, 479, 488, 509
CviQI	GTAC	2 cut(s)	334, 359
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	4 cut(s)	111, 240, 502, 601
DpnII	GATC	4 cut(s)	109, 238, 500, 599
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	566
FaeI	CATG	5 cut(s)	53, 119, 482, 491, 512
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	5 cut(s)	49, 115, 478, 487, 508
Fnu4HI	GCNGC	5 cut(s)	70, 73, 270, 281, 696
FokI	GGATG	4 cut(s)	74, 339, 421, 529
Fsp4HI	GCNGC	5 cut(s)	70, 73, 270, 281, 696
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	5 cut(s)	70, 73, 270, 281, 696
GsuI	CTGGAG	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	531
HapII	CCGG	2 cut(s)	184, 251
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	53, 119, 482, 491, 512
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	163, 203, 641
HpaII	CCGG	2 cut(s)	184, 251
HphI	GGTGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	184, 479, 597
HpyAV	CCTTC	3 cut(s)	527, 603, 636
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	5 cut(s)	272, 368, 460, 512, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	5 cut(s)	53, 119, 482, 491, 512
HspAI	GCGC	1 cut(s)	6
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	109, 238, 500, 599
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	4 cut(s)	84, 256, 267, 707
LweI	GCATC	3 cut(s)	318, 469, 551
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	255, 587
MalI	GATC	4 cut(s)	111, 240, 502, 601
MboI	GATC	4 cut(s)	109, 238, 500, 599
MboII	GAAGA	2 cut(s)	26, 461
MflI	RGATCY	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	245, 273, 341, 650, 656, 674
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	26, 54, 118, 123, 271, 459
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	653, 671
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	280, 390
MspI	CCGG	2 cut(s)	184, 251
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	704
NdeII	GATC	4 cut(s)	109, 238, 500, 599
NlaIII	CATG	5 cut(s)	53, 119, 482, 491, 512
NlaIV	GGNNCC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	512
PagI	TCATGA	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	203, 641
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	71, 74, 271, 282, 697
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	2 cut(s)	335, 360
RsaNI	GTAC	2 cut(s)	334, 359
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	653, 671
SatI	GCNGC	5 cut(s)	70, 73, 270, 281, 696
Sau3AI	GATC	4 cut(s)	109, 238, 500, 599
SchI	GAGTC	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	318, 469, 551
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	6 cut(s)	245, 273, 341, 650, 656, 674
SsiI	CCGC	5 cut(s)	59, 69, 140, 154, 278
SspMI	CTAG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	551
TasI	AATT	6 cut(s)	245, 273, 341, 650, 656, 674
TatI	WGTACW	2 cut(s)	333, 358
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	203, 641
Tru1I	TTAA	2 cut(s)	653, 671
Tru9I	TTAA	2 cut(s)	653, 671
TscAI	CASTG	1 cut(s)	623
TseI	GCWGC	4 cut(s)	72, 269, 280, 695
TspDTI	ATGAA	6 cut(s)	392, 425, 467, 495, 563, 571
TspRI	CASTG	1 cut(s)	623
Van91I	CCANNNNNTGG	1 cut(s)	552
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.