Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016350

Physical Location & Seq

Genomic Coordinates Forward (+)

34491041 .. 34492065

Gene Structure 1025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGCACAAATGCTATAAAGTATGCAAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACTGGTTTGTATTTGCTTGGGAATAATGGCTCAGAAGCAGTGTTTCATTTTCTGTTGGAACTCTCAGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACAGATCGAATATCTTTGAGCGTATTTGGTTTTCCGACATTGATAAGTGCCAATATCCAGAAGCTTGTGGGAAAATGGGATTATGCGCAAATCAGACGTGTACATGTCCAACTGGTTTCTCCCATGTTGATTCTGAGAAAGACCTTGAGTGTGTGCAACAGATTAAGAGTAGACATTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGTTCACTGAACCTGTGAAACTTGGTGCAAGTTTATCAATATGTCAATCTCTATGCTCTCAAAATTGTACTTGCTTGGCCTTTTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGCTTCATCATATACAGCTCTAATAGCCAAGAAGATCGAATAGGGTACATAAAGGCTGTAGGGCCTTGGTCTGGTCATGAGAAACACAGTATTCCAGTGTTACATTTGGTAATGATAATGACTATGCTGTTAATTGTCACAGTGGTCATGAGACTCATATGGTGGAGAAAGAAAAAGCATACTAGAGCAAGTGTAGATGTATGGAATTTATCTTCATCAGCAGAGCTTGAGATATCCTCTATTCCTGGTTTGCCCATTAGATTTAATTATGAAGAGCTTGTCACCGCAACTGAAAATTTTAACACCCAAAATGGCAGTGGTGGCTTTAGTACTATATATAAAGGTACTATACTAGACAACAATGCAGTGGCTGTGAAAAAGATTACAAGTTTGGGAGTCCGAGGGAAGGAGTCTTTTACTAAGACTGCAACAATGGGAAGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

317

Amino Acids

34.96

Weight (kDa)

8.18

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29231
malus_domestica	MD03G1019400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0342651 RchiOBHm_Chr3g0459441
rosa_laevigata	RLG00000003116 RLG00000011590 RLG00000014116 RLG00000025328
rosa_multiflora	Rmu_sc0001772.1_g000043 Rmu_sc0001772.1_g000072 Rmu_sc0013880.1_g000001
rosa_samantha	Rh5BG321700 Rh5CG198300 Rh7DG390400
rosa_wichuraiana	Rw7G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	337
AciI	CCGC	1 cut(s)	792
AcsI	RAATTY	2 cut(s)	712, 802
AfaI	GTAC	5 cut(s)	268, 445, 554, 838, 853
AfiI	CCNNNNNNNGG	2 cut(s)	578, 913
AflIII	ACRYGT	2 cut(s)	263, 269
AgsI	TTSAA	1 cut(s)	497
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	5 cut(s)	135, 230, 525, 733, 784
AluI	AGCT	5 cut(s)	135, 230, 525, 733, 784
Alw26I	GTCTC	1 cut(s)	652
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	2 cut(s)	453, 569
ApoI	RAATTY	2 cut(s)	712, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	4 cut(s)	153, 491, 690, 860
BfmI	CTRYAG	1 cut(s)	564
BmcAI	AGTACT	1 cut(s)	838
Bme1390I	CCNGG	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpuEI	CTTGAG	2 cut(s)	332, 755
BsaJI	CCNNGG	3 cut(s)	463, 572, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 913
Bse1I	ACTGG	4 cut(s)	35, 67, 283, 602
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	3 cut(s)	463, 572, 907
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	578, 913
BseMII	CTCAG	3 cut(s)	105, 138, 291
BseNI	ACTGG	4 cut(s)	35, 67, 283, 602
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	455, 571
BslI	CCNNNNNNNGG	2 cut(s)	578, 913
BsmAI	GTCTC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	455, 571
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	170, 541
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	2 cut(s)	455, 571
BspCNI	CTCAG	3 cut(s)	104, 137, 292
BspHI	TCATGA	2 cut(s)	583, 654
BspQI	GCTCTTC	1 cut(s)	774
BsrGI	TGTACA	1 cut(s)	266
BsrI	ACTGG	4 cut(s)	35, 67, 283, 602
BssECI	CCNNGG	3 cut(s)	463, 572, 907
BssMI	GATC	2 cut(s)	170, 541
BssT1I	CCWWGG	2 cut(s)	463, 572
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	596, 649
Bst6I	CTCTTC	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	91, 124, 300, 927
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	2 cut(s)	173, 544
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	2 cut(s)	170, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	531, 828
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	455, 571
BtgI	CCRYGG	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	3 cut(s)	105, 829, 879
BtsIMutI	CAGTG	7 cut(s)	42, 105, 381, 609, 654, 829, 879
CaiI	CAGNNNCTG	1 cut(s)	878
CciI	TCATGA	2 cut(s)	583, 654
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	5 cut(s)	267, 444, 553, 837, 852
CviAII	CATG	5 cut(s)	270, 290, 464, 584, 655
CviQI	GTAC	5 cut(s)	267, 444, 553, 837, 852
DdeI	CTNAG	4 cut(s)	91, 124, 300, 927
DpnI	GATC	2 cut(s)	172, 543
DpnII	GATC	2 cut(s)	170, 541
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	2 cut(s)	463, 572
Eco32I	GATATC	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	751
EcoRV	GATATC	1 cut(s)	741
EcoT14I	CCWWGG	2 cut(s)	463, 572
ErhI	CCWWGG	2 cut(s)	463, 572
FaeI	CATG	5 cut(s)	273, 293, 467, 587, 658
FatI	CATG	5 cut(s)	269, 289, 463, 583, 654
FauNDI	CATATG	1 cut(s)	665
FblI	GTMKAC	1 cut(s)	337
FokI	GGATG	1 cut(s)	388
FspBI	CTAG	4 cut(s)	153, 491, 690, 860
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	455, 571
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	273, 293, 467, 587, 658
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	5 cut(s)	149, 296, 660, 903, 917
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	3 cut(s)	267, 338, 381
Hpy188I	TCNGA	6 cut(s)	94, 127, 202, 261, 301, 908
Hpy188III	TCNNGA	3 cut(s)	224, 584, 655
Hpy8I	GTNNAC	3 cut(s)	267, 338, 381
HpyAV	CCTTC	2 cut(s)	362, 907
HpyCH4III	ACNGT	2 cut(s)	596, 649
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	26, 322, 404, 872, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	531, 828
HpyF3I	CTNAG	4 cut(s)	91, 124, 300, 927
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	5 cut(s)	273, 293, 467, 587, 658
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	170, 541
LguI	GCTCTTC	1 cut(s)	774
MaeI	CTAG	4 cut(s)	153, 491, 690, 860
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	606, 643, 787
MalI	GATC	2 cut(s)	172, 543
MboI	GATC	2 cut(s)	170, 541
MboII	GAAGA	4 cut(s)	465, 551, 711, 791
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	143, 439, 502, 639, 712, 772, 802
MlyI	GAGTC	4 cut(s)	143, 654, 912, 926
MmeI	TCCRAC	3 cut(s)	96, 225, 299
MnlI	CCTC	2 cut(s)	754, 902
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	4 cut(s)	330, 638, 771, 807
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	531, 828
NcoI	CCATGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	2 cut(s)	170, 541
NlaIII	CATG	5 cut(s)	273, 293, 467, 587, 658
NmuCI	GTSAC	2 cut(s)	643, 787
NsbI	TGCGCA	1 cut(s)	253
NspI	RCATGY	1 cut(s)	273
PagI	TCATGA	2 cut(s)	583, 654
PciI	ACATGT	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	342
PleI	GAGTC	4 cut(s)	143, 654, 911, 925
PpsI	GAGTC	4 cut(s)	143, 654, 911, 925
PscI	ACATGT	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspPI	GGNCC	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	878
PsyI	GACNNNGTC	1 cut(s)	342
RsaI	GTAC	5 cut(s)	268, 445, 554, 838, 853
RsaNI	GTAC	5 cut(s)	267, 444, 553, 837, 852
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	330, 638, 771, 807
Sau3AI	GATC	2 cut(s)	170, 541
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	838
SchI	GAGTC	4 cut(s)	143, 654, 912, 926
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	137, 232, 266, 312, 391, 527, 735, 786, 853
SfcI	CTRYAG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	311, 734
SmoI	CTYRAG	2 cut(s)	311, 734
Sse9I	AATT	7 cut(s)	143, 439, 502, 639, 712, 772, 802
SsiI	CCGC	1 cut(s)	792
SspMI	CTAG	4 cut(s)	153, 491, 690, 860
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	2 cut(s)	463, 572
TaaI	ACNGT	2 cut(s)	596, 649
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	173, 544
TasI	AATT	7 cut(s)	143, 439, 502, 639, 712, 772, 802
TatI	WGTACW	3 cut(s)	266, 443, 836
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	4 cut(s)	330, 638, 771, 807
Tru9I	TTAA	4 cut(s)	330, 638, 771, 807
TscAI	CASTG	7 cut(s)	42, 105, 388, 609, 654, 829, 879
TseFI	GTSAC	2 cut(s)	643, 787
Tsp45I	GTSAC	2 cut(s)	643, 787
TspDTI	ATGAA	6 cut(s)	68, 95, 380, 502, 711, 792
TspRI	CASTG	7 cut(s)	42, 105, 388, 609, 654, 829, 879
Tth111I	GACNNNGTC	1 cut(s)	342
XapI	RAATTY	2 cut(s)	712, 802
XceI	RCATGY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	4 cut(s)	153, 491, 690, 860
ZrmI	AGTACT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.