Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016350

Physical Location & Seq

Genomic Coordinates Reverse (-)

53413075 .. 53433143

Gene Structure 20069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACAAGCAATCCAAAGAAGTTGCAGAAGGAATTGGCAGAAGCAAAGAGGAGGCGGCTTGAAGAAAACGAGAGAGTTGAAGCACAACTAAGAGAGGCACAAAGGATGGCTGATCTTGAGGCCAAGCAAAAACAAGACCACTATGAGAAGGAAAGACAAGCCCGAAATGCAATGCAGGCAAATACCCTTGAATCTCCACCCCCGCGGCTACTGATCGACAACGATTTATATTTGGGGAAGAAAGGCAGGATTAACAGGTGCTCGGCTCTGTTTTACTTGTCCACACTGACGGGTCATATCCCTCAAAGGCTCAAATCAAAATGTACTAACAAAGAATTGTGCAGATGGTTGTCATGGCCTCATAACTTCATGCAAGAGCACATTCTGAGACTTCCTCATATCCAACCTCACATGAATGAGCTGTACGCATATTCAGACAAGTCAGAACCCATCCATACTCACTCCATTGTTCCAAACTTCACAGCCACCTATATAGAATTCATTGAGAATTCTGGTGCTTTCTTGGCCTCCAGTAATGTCACTTTCAAAGCCTTTATCACTAAAGAAATTACCATTGAGGATCTGGTGCTTCAGTGGAAGGGCCAGACTTATTGGAAATTATCCATGGGCACAAATGCTATCAAGTATGCGAGTGTGCCAGTGTCCTTTATGACAATGAATGGAACTGATATGAGCTTTGCCAAATTGGACTCTAGTGGGATATTATACATATCGAATATCTTTGAGCGTATTTGGTTTTCCGACATTGATAAGTGCCAATATCCAGAAGCTTGTGGGAAAATGGGATTATGCACAAATCAGACGCGTACATGTCCAACTGGTTTCTCCCATGTTGATTCTGAGAAAGACCTTGAGTGTGTGCAACTGAAAGAGTCGACATTGTCTTTGCCTTCTGCTTGTAATGAAAGTGGGGATGGTACCAATGGATTCAAGTCCTCAATTGTTTATTTGAAGCTGGATAAAGCGAAGCAGTCTGCTAAGCTGCATCCTTCTCTGCCGTCTGCTGGTGGTCTTTTAAAAACTGCTCCAATCTGTGAAATTGTTGGTGGTGATTCTGTGGCTAACTGGATTTTGGGAGTTATCTGTGATCTAAAATTGCCGGAGTTACCCTCCATTGCTCCAATTCCGCTGCGAACGAGTTCTCCTATTATTGATAGCATCTCAAGTTCCTTTGGATGGGTAGGACATTTATCTTTTAGCAAGGCATATTTTCTCTCTGCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

415

Amino Acids

46.61

Weight (kDa)

8.34

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29231
malus_domestica	MD03G1019400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0342651 RchiOBHm_Chr3g0459441
rosa_laevigata	RLG00000003116 RLG00000011590 RLG00000014116 RLG00000025328
rosa_multiflora	Rmu_sc0001772.1_g000043 Rmu_sc0001772.1_g000072 Rmu_sc0013880.1_g000001
rosa_samantha	Rh5BG321700 Rh5CG198300 Rh7DG390400
rosa_wichuraiana	Rw7G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	938
AccI	GTMKAC	1 cut(s)	896
AccII	CGCG	2 cut(s)	205, 826
AciI	CCGC	4 cut(s)	55, 203, 205, 1148
AclWI	GGATC	1 cut(s)	588
AcsI	RAATTY	2 cut(s)	497, 508
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	4 cut(s)	325, 425, 829, 940
AfiI	CCNNNNNNNGG	2 cut(s)	1025, 1197
AflIII	ACRYGT	2 cut(s)	824, 830
AgsI	TTSAA	6 cut(s)	62, 80, 191, 547, 952, 973
AloI	GAACNNNNNNTCC	2 cut(s)	1147, 1179
AluBI	AGCT	5 cut(s)	421, 696, 791, 976, 1003
AluI	AGCT	5 cut(s)	421, 696, 791, 976, 1003
Alw21I	GWGCWC	2 cut(s)	263, 381
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	588
AoxI	GGCC	4 cut(s)	120, 356, 525, 601
ApeKI	GCWGC	2 cut(s)	1003, 1150
ApoI	RAATTY	2 cut(s)	497, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	889, 921
Asp700I	GAANNNNTTC	1 cut(s)	1159
Asp718I	GGTACC	1 cut(s)	938
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	938
Bbv12I	GWGCWC	2 cut(s)	263, 381
BbvI	GCAGC	2 cut(s)	990, 1137
BccI	CCATC	5 cut(s)	100, 339, 458, 929, 1191
BceAI	ACGGC	1 cut(s)	1003
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	714
BisI	GCNGC	4 cut(s)	56, 206, 1004, 1151
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	4 cut(s)	57, 207, 1005, 1152
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	940
BmsI	GCATC	2 cut(s)	1015, 1188
BplI	GAGNNNNNCTC	4 cut(s)	379, 411, 1115, 1147
BpmI	CTGGAG	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuEI	CTTGAG	3 cut(s)	137, 893, 1168
BsaJI	CCNNGG	2 cut(s)	203, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	1025, 1197
Bse1I	ACTGG	4 cut(s)	531, 659, 844, 1091
Bse3DI	GCAATG	2 cut(s)	177, 1134
BseDI	CCNNGG	2 cut(s)	203, 624
BseGI	GGATG	5 cut(s)	111, 450, 940, 1006, 1202
BseLI	CCNNNNNNNGG	2 cut(s)	1025, 1197
BseMI	GCAATG	2 cut(s)	177, 1134
BseMII	CTCAG	2 cut(s)	377, 852
BseNI	ACTGG	4 cut(s)	531, 659, 844, 1091
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	990, 1137
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	205, 826
BshFI	GGCC	4 cut(s)	122, 358, 527, 603
BshNI	GGYRCC	1 cut(s)	938
BsiHKAI	GWGCWC	2 cut(s)	263, 381
BsiSI	CCGG	1 cut(s)	1121
BslI	CCNNNNNNNGG	2 cut(s)	1025, 1197
BsmAI	GTCTC	1 cut(s)	382
BsnI	GGCC	4 cut(s)	122, 358, 527, 603
Bsp1286I	GDGCHC	3 cut(s)	263, 381, 632
Bsp143I	GATC	4 cut(s)	112, 213, 580, 1108
Bsp1720I	GCTNAGC	1 cut(s)	999
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	4 cut(s)	55, 203, 205, 1148
BspANI	GGCC	4 cut(s)	122, 358, 527, 603
BspCNI	CTCAG	2 cut(s)	378, 853
BspFNI	CGCG	2 cut(s)	205, 826
BspLI	GGNNCC	1 cut(s)	940
BspPI	GGATC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	938
BsrDI	GCAATG	2 cut(s)	177, 1134
BsrI	ACTGG	4 cut(s)	531, 659, 844, 1091
BssECI	CCNNGG	2 cut(s)	203, 624
BssMI	GATC	4 cut(s)	112, 213, 580, 1108
BssT1I	CCWWGG	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	89, 386, 861, 999
BstDSI	CCRYGG	2 cut(s)	203, 624
BstF5I	GGATG	5 cut(s)	111, 450, 940, 1006, 1202
BstFNI	CGCG	2 cut(s)	205, 826
BstKTI	GATC	4 cut(s)	115, 216, 583, 1111
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	4 cut(s)	112, 213, 580, 1108
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 524
BstNSI	RCATGY	2 cut(s)	834, 1245
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	2 cut(s)	205, 826
BstV1I	GCAGC	2 cut(s)	990, 1137
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	122, 358, 527, 603
BtgI	CCRYGG	2 cut(s)	203, 624
BtsCI	GGATG	5 cut(s)	111, 450, 940, 1006, 1202
BtsIMutI	CAGTG	3 cut(s)	284, 599, 666
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	601
Cfr42I	CCGCGG	1 cut(s)	206
CseI	GACGC	1 cut(s)	832
Csp6I	GTAC	4 cut(s)	324, 424, 828, 939
CviAII	CATG	7 cut(s)	354, 370, 412, 625, 831, 851, 1242
CviQI	GTAC	4 cut(s)	324, 424, 828, 939
DdeI	CTNAG	4 cut(s)	89, 386, 861, 999
DpnI	GATC	4 cut(s)	114, 215, 582, 1110
DpnII	GATC	4 cut(s)	112, 213, 580, 1108
DraI	TTTAAA	1 cut(s)	1038
Eco130I	CCWWGG	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	497, 508
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	7 cut(s)	357, 373, 415, 628, 834, 854, 1245
FatI	CATG	7 cut(s)	353, 369, 411, 624, 830, 850, 1241
FauI	CCCGC	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	896
Fnu4HI	GCNGC	4 cut(s)	56, 206, 1004, 1151
FokI	GGATG	5 cut(s)	118, 437, 947, 993, 1209
Fsp4HI	GCNGC	4 cut(s)	56, 206, 1004, 1151
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	4 cut(s)	56, 206, 1004, 1151
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	4 cut(s)	122, 358, 527, 603
HapII	CCGG	1 cut(s)	1121
HgaI	GACGC	1 cut(s)	832
Hin1II	CATG	7 cut(s)	357, 373, 415, 628, 834, 854, 1245
HincII	GTYRAC	1 cut(s)	897
HindII	GTYRAC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	191, 710, 857, 893, 948, 1073
HpaII	CCGG	1 cut(s)	1121
HphI	GGTGA	1 cut(s)	1082
Hpy166II	GTNNAC	2 cut(s)	282, 897
Hpy188I	TCNGA	6 cut(s)	387, 436, 445, 763, 822, 862
Hpy188III	TCNNGA	2 cut(s)	116, 785
Hpy8I	GTNNAC	2 cut(s)	282, 897
HpyAV	CCTTC	5 cut(s)	22, 142, 592, 921, 1020
HpyCH4V	TGCA	9 cut(s)	25, 170, 175, 342, 373, 813, 883, 1006, 1241
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 524
HpyF3I	CTNAG	4 cut(s)	89, 386, 861, 999
Hsp92II	CATG	7 cut(s)	357, 373, 415, 628, 834, 854, 1245
KpnI	GGTACC	1 cut(s)	942
KspI	CCGCGG	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	112, 213, 580, 1108
LmnI	GCTCC	2 cut(s)	1051, 1144
Lsp1109I	GCAGC	2 cut(s)	990, 1137
LweI	GCATC	2 cut(s)	1015, 1188
MaeI	CTAG	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	538, 1125
MalI	GATC	4 cut(s)	114, 215, 582, 1110
MboI	GATC	4 cut(s)	112, 213, 580, 1108
MboII	GAAGA	2 cut(s)	74, 250
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	263, 381, 632
MluI	ACGCGT	1 cut(s)	824
MlyI	GAGTC	2 cut(s)	704, 902
MmeI	TCCRAC	3 cut(s)	427, 786, 860
MroXI	GAANNNNTTC	1 cut(s)	1159
MseI	TTAA	2 cut(s)	252, 1037
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	205, 1150
MspI	CCGG	1 cut(s)	1121
MunI	CAATTG	1 cut(s)	960
MvnI	CGCG	2 cut(s)	205, 826
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 524
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	4 cut(s)	112, 213, 580, 1108
NlaIII	CATG	7 cut(s)	357, 373, 415, 628, 834, 854, 1245
NlaIV	GGNNCC	1 cut(s)	940
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	2 cut(s)	834, 1245
PciI	ACATGT	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	1159
PfeI	GAWTC	4 cut(s)	191, 857, 948, 1073
PflFI	GACNNNGTC	1 cut(s)	901
PkrI	GCNGC	4 cut(s)	57, 207, 1005, 1152
PleI	GAGTC	2 cut(s)	704, 901
PpsI	GAGTC	2 cut(s)	704, 901
PscI	ACATGT	1 cut(s)	830
PspN4I	GGNNCC	1 cut(s)	940
PspPI	GGNCC	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	901
RsaI	GTAC	4 cut(s)	325, 425, 829, 940
RsaNI	GTAC	4 cut(s)	324, 424, 828, 939
RseI	CAYNNNNRTG	1 cut(s)	414
SacII	CCGCGG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	895
SaqAI	TTAA	2 cut(s)	252, 1037
SatI	GCNGC	4 cut(s)	56, 206, 1004, 1151
Sau3AI	GATC	4 cut(s)	112, 213, 580, 1108
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	2 cut(s)	704, 902
SduI	GDGCHC	3 cut(s)	263, 381, 632
SetI	ASST	9 cut(s)	260, 409, 423, 491, 698, 793, 873, 978, 1005
SfaNI	GCATC	2 cut(s)	1015, 1188
Sfr303I	CCGCGG	1 cut(s)	206
SgrBI	CCGCGG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	116, 872, 1183
SmoI	CTYRAG	3 cut(s)	116, 872, 1183
SsiI	CCGC	4 cut(s)	55, 203, 205, 1148
SspMI	CTAG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	624
TaqI	TCGA	3 cut(s)	216, 734, 896
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	2 cut(s)	58, 208
TfiI	GAWTC	4 cut(s)	191, 857, 948, 1073
Tru1I	TTAA	2 cut(s)	252, 1037
Tru9I	TTAA	2 cut(s)	252, 1037
TscAI	CASTG	3 cut(s)	291, 599, 666
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	1003, 1150
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	5 cut(s)	358, 428, 490, 692, 939
TspRI	CASTG	3 cut(s)	291, 599, 666
Tth111I	GACNNNGTC	1 cut(s)	901
XapI	RAATTY	2 cut(s)	497, 508
XceI	RCATGY	2 cut(s)	834, 1245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	1159
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.