Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0016350

Physical Location & Seq

Genomic Coordinates Forward (+)

178557 .. 186133

Gene Structure 7577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgctcaaaaatgtgaccctctgggagagttttgagcaccctacagatacagttgtcatggatcaaagattgcatgttggtaaatctctgcttacacgcagggaccatgccaagggtgattatagtcttgcagttaccattgaggatctggtgcttcagtggaagggccagacttattggaaattatccatgggcacaaatgctatcaagtatgcaagtgtgccagtgtcctttatgacaatgaatggaactggtttgtatctgcttgggaataatggctcagaagtagtgtttcattttctgttggaactctcagatatgagctttgccaaattggactctagtgggatattatacatatcgaatatctttgagcgtatttggttttccgacattgataagtgccaatatccagaagcttgtgggaaaatgggattatgcacaaatcagacgcgtacatgtccaactggtttctcccatgttgattctgagaaagaccttgagtgtgtgcaactgaaagagtcgacattgtctttgccttctgcttgtaatgaaagtggggatggtaccaatggattcaagtcctcaattgtttatttgaagctggataaaggtatggactattttgcaaatcagttcactgaacctattgttggtggtgattctgtggctaactggattttgggagttatctgtgatctaaaattgccggagttaccctccattgctccaattccgctgcgaacgagttctcctattattgatagcatctcaagttcctttggatggaggagcatttctcctgatgatccagtgaaattgtccctgctagatgtacaatatgcgaaaaaaatgaaaactgacagctggcatattctcattgggatgaaaaccactaaaagttctacagctaatcaacaaatacctcattctttgcatctatgtcttccagttcatgaagctcatgtcaaaatgcgatcaaaacatgcaagccttcaaggaagtggccatcataaggcatccacgtattggagaatatgcatttgggttcattacttcatcagttacccttcaggatccaaactatttattcactggcttccttccatatttgatgattcagctaaattaaaattatgctggagcttaaaattatcacaaccaaagttcgcagccaaccaagcaagcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

397

Amino Acids

44.44

Weight (kDa)

7.98

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29231
malus_domestica	MD03G1019400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0342651 RchiOBHm_Chr3g0459441
rosa_laevigata	RLG00000003116 RLG00000011590 RLG00000014116 RLG00000025328
rosa_multiflora	Rmu_sc0001772.1_g000043 Rmu_sc0001772.1_g000072 Rmu_sc0013880.1_g000001
rosa_samantha	Rh5BG321700 Rh5CG198300 Rh7DG390400
rosa_wichuraiana	Rw7G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	1029
AccI	GTMKAC	1 cut(s)	524
AccII	CGCG	1 cut(s)	454
AciI	CCGC	1 cut(s)	737
AclWI	GGATC	5 cut(s)	69, 153, 803, 1071, 1084
AcoI	YGGCCR	1 cut(s)	1006
AcuI	CTGAAG	2 cut(s)	140, 1056
AfaI	GTAC	3 cut(s)	457, 568, 837
AfiI	CCNNNNNNNGG	5 cut(s)	112, 653, 786, 1015, 1029
AflIII	ACRYGT	2 cut(s)	452, 458
AgsI	TTSAA	3 cut(s)	580, 601, 998
AjuI	GAANNNNNNNTTGG	4 cut(s)	636, 668, 1027, 1059
AloI	GAACNNNNNNTCC	2 cut(s)	736, 768
AluBI	AGCT	8 cut(s)	324, 419, 604, 867, 911, 962, 1124, 1146
AluI	AGCT	8 cut(s)	324, 419, 604, 867, 911, 962, 1124, 1146
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	5 cut(s)	69, 153, 803, 1071, 1084
AoxI	GGCC	2 cut(s)	166, 1006
ApeKI	GCWGC	2 cut(s)	739, 1172
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
Asp700I	GAANNNNTTC	1 cut(s)	748
Asp718I	GGTACC	1 cut(s)	566
AspS9I	GGNCC	2 cut(s)	103, 166
AsuHPI	GGTGA	2 cut(s)	128, 671
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BalI	TGGCCA	1 cut(s)	1008
BamHI	GGATCC	1 cut(s)	1076
BanI	GGYRCC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	726, 1184
BccI	CCATC	3 cut(s)	557, 780, 1017
BfaI	CTAG	2 cut(s)	342, 830
BfmI	CTRYAG	2 cut(s)	42, 906
BisI	GCNGC	2 cut(s)	740, 1173
BlsI	GCNGC	2 cut(s)	741, 1174
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 166
BmiI	GGNNCC	3 cut(s)	104, 568, 1078
BmsI	GCATC	3 cut(s)	777, 946, 1028
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	4 cut(s)	704, 736, 784, 816
BpmI	CTGGAG	1 cut(s)	1162
BpuEI	CTTGAG	2 cut(s)	521, 757
BsaAI	YACGTR	1 cut(s)	1026
BsaJI	CCNNGG	2 cut(s)	111, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 653, 786, 1015, 1029
Bse1I	ACTGG	7 cut(s)	224, 256, 472, 680, 812, 950, 1100
Bse3DI	GCAATG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	111, 189
BseGI	GGATG	4 cut(s)	568, 791, 891, 1019
BseLI	CCNNNNNNNGG	5 cut(s)	112, 653, 786, 1015, 1029
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	294, 327, 480
BseNI	ACTGG	7 cut(s)	224, 256, 472, 680, 812, 950, 1100
BseRI	GAGGAG	1 cut(s)	805
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	726, 1184
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	168, 1008
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	2 cut(s)	116, 808
BslI	CCNNNNNNNGG	5 cut(s)	112, 653, 786, 1015, 1029
BsmFI	GGGAC	2 cut(s)	116, 808
BsnI	GGCC	2 cut(s)	168, 1008
Bsp1286I	GDGCHC	2 cut(s)	39, 197
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	2 cut(s)	168, 1008
BspCNI	CTCAG	3 cut(s)	293, 326, 481
BspFNI	CGCG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	104, 568, 1078
BspPI	GGATC	5 cut(s)	69, 153, 803, 1071, 1084
BspT107I	GGYRCC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	7 cut(s)	224, 256, 472, 680, 812, 950, 1100
BssECI	CCNNGG	2 cut(s)	111, 189
BssMI	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
BssT1I	CCWWGG	2 cut(s)	111, 189
Bst4CI	ACNGT	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	835
BstBAI	YACGTR	1 cut(s)	1026
BstC8I	GCNNGC	3 cut(s)	869, 991, 1186
BstDEI	CTNAG	3 cut(s)	280, 313, 489
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	4 cut(s)	568, 791, 891, 1019
BstFNI	CGCG	1 cut(s)	454
BstKTI	GATC	6 cut(s)	64, 148, 700, 811, 980, 1079
BstMBI	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
BstMWI	GCNNNNNNNGC	1 cut(s)	1181
BstNSI	RCATGY	3 cut(s)	77, 462, 989
BstSFI	CTRYAG	2 cut(s)	42, 906
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	726, 1184
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	145, 1076
BstYI	RGATCY	2 cut(s)	145, 1076
BsuRI	GGCC	2 cut(s)	168, 1008
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	568, 791, 891, 1019
BtsIMutI	CAGTG	5 cut(s)	164, 231, 639, 819, 1093
Cac8I	GCNNGC	3 cut(s)	869, 991, 1186
CciI	TCATGA	1 cut(s)	955
Cfr13I	GGNCC	2 cut(s)	103, 166
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	456, 567, 836
CviAII	CATG	9 cut(s)	58, 74, 107, 190, 459, 479, 956, 965, 986
CviQI	GTAC	3 cut(s)	456, 567, 836
DdeI	CTNAG	3 cut(s)	280, 313, 489
DpnI	GATC	6 cut(s)	63, 147, 699, 810, 979, 1078
DpnII	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
EaeI	YGGCCR	1 cut(s)	1006
Eco130I	CCWWGG	2 cut(s)	111, 189
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	140, 1056
EcoT14I	CCWWGG	2 cut(s)	111, 189
EcoT22I	ATGCAT	1 cut(s)	1043
ErhI	CCWWGG	2 cut(s)	111, 189
FaeI	CATG	9 cut(s)	61, 77, 110, 193, 462, 482, 959, 968, 989
FaqI	GGGAC	2 cut(s)	116, 808
FatI	CATG	9 cut(s)	57, 73, 106, 189, 458, 478, 955, 964, 985
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	2 cut(s)	740, 1173
FokI	GGATG	4 cut(s)	575, 798, 898, 1006
Fsp4HI	GCNGC	2 cut(s)	740, 1173
FspBI	CTAG	2 cut(s)	342, 830
GluI	GCNGC	2 cut(s)	740, 1173
GsuI	CTGGAG	1 cut(s)	1162
HaeIII	GGCC	2 cut(s)	168, 1008
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	9 cut(s)	61, 77, 110, 193, 462, 482, 959, 968, 989
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	6 cut(s)	338, 485, 521, 576, 662, 1118
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	2 cut(s)	128, 671
Hpy166II	GTNNAC	2 cut(s)	525, 639
Hpy188I	TCNGA	5 cut(s)	283, 316, 391, 450, 490
Hpy188III	TCNNGA	4 cut(s)	413, 803, 956, 1074
Hpy8I	GTNNAC	2 cut(s)	525, 639
HpyAV	CCTTC	5 cut(s)	157, 549, 1004, 1080, 1113
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	1025
HpyCH4V	TGCA	9 cut(s)	73, 131, 215, 441, 511, 629, 937, 989, 1041
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1181
HpyF3I	CTNAG	3 cut(s)	280, 313, 489
HpySE526I	ACGT	1 cut(s)	1025
Hsp92II	CATG	9 cut(s)	61, 77, 110, 193, 462, 482, 959, 968, 989
KpnI	GGTACC	1 cut(s)	570
Kzo9I	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
LmnI	GCTCC	3 cut(s)	733, 792, 1143
Lsp1109I	GCAGC	2 cut(s)	726, 1184
LweI	GCATC	3 cut(s)	777, 946, 1028
MaeI	CTAG	2 cut(s)	342, 830
MaeII	ACGT	1 cut(s)	1025
MaeIII	GTNAC	4 cut(s)	13, 133, 714, 1064
MalI	GATC	6 cut(s)	63, 147, 699, 810, 979, 1078
MboI	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
MboII	GAAGA	1 cut(s)	938
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	2 cut(s)	145, 1076
MhlI	GDGCHC	2 cut(s)	39, 197
MlsI	TGGCCA	1 cut(s)	1008
MluCI	AATT	9 cut(s)	182, 332, 588, 704, 732, 818, 1127, 1133, 1151
MluI	ACGCGT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	1008
MlyI	GAGTC	2 cut(s)	332, 530
MmeI	TCCRAC	3 cut(s)	285, 414, 488
MnlI	CCTC	6 cut(s)	29, 136, 595, 730, 783, 936
Mox20I	TGGCCA	1 cut(s)	1008
Mph1103I	ATGCAT	1 cut(s)	1043
MroXI	GAANNNNTTC	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	1008
MseI	TTAA	2 cut(s)	1130, 1148
MslI	CAYNNNNRTG	1 cut(s)	884
Msp20I	TGGCCA	1 cut(s)	1008
MspA1I	CMGCKG	2 cut(s)	739, 867
MspI	CCGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	1 cut(s)	1181
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
NlaIII	CATG	9 cut(s)	61, 77, 110, 193, 462, 482, 959, 968, 989
NlaIV	GGNNCC	3 cut(s)	104, 568, 1078
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	1043
NspI	RCATGY	3 cut(s)	77, 462, 989
PagI	TCATGA	1 cut(s)	955
PciI	ACATGT	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	4 cut(s)	485, 576, 662, 1118
PflFI	GACNNNGTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	1029
PkrI	GCNGC	2 cut(s)	741, 1174
PleI	GAGTC	2 cut(s)	332, 529
PpsI	GAGTC	2 cut(s)	332, 529
Ppu21I	YACGTR	1 cut(s)	1026
PscI	ACATGT	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	104, 568, 1078
PspPI	GGNCC	2 cut(s)	103, 166
PsuI	RGATCY	2 cut(s)	145, 1076
PsyI	GACNNNGTC	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	867
RsaI	GTAC	3 cut(s)	457, 568, 837
RsaNI	GTAC	3 cut(s)	456, 567, 836
RseI	CAYNNNNRTG	1 cut(s)	884
SalI	GTCGAC	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	1130, 1148
SatI	GCNGC	2 cut(s)	740, 1173
Sau3AI	GATC	6 cut(s)	61, 145, 697, 808, 977, 1076
Sau96I	GGNCC	2 cut(s)	103, 166
SchI	GAGTC	2 cut(s)	332, 530
SduI	GDGCHC	2 cut(s)	39, 197
SfaNI	GCATC	3 cut(s)	777, 946, 1028
SfcI	CTRYAG	2 cut(s)	42, 906
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	2 cut(s)	500, 772
SmoI	CTYRAG	2 cut(s)	500, 772
Sse9I	AATT	9 cut(s)	182, 332, 588, 704, 732, 818, 1127, 1133, 1151
SsiI	CCGC	1 cut(s)	737
SspMI	CTAG	2 cut(s)	342, 830
StyI	CCWWGG	2 cut(s)	111, 189
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	1028
TaqI	TCGA	2 cut(s)	362, 524
TasI	AATT	9 cut(s)	182, 332, 588, 704, 732, 818, 1127, 1133, 1151
TatI	WGTACW	1 cut(s)	835
TfiI	GAWTC	4 cut(s)	485, 576, 662, 1118
Tru1I	TTAA	2 cut(s)	1130, 1148
Tru9I	TTAA	2 cut(s)	1130, 1148
TscAI	CASTG	5 cut(s)	164, 231, 646, 819, 1100
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	739, 1172
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	9 cut(s)	257, 284, 567, 869, 902, 944, 972, 1040, 1048
TspRI	CASTG	5 cut(s)	164, 231, 646, 819, 1100
Tth111I	GACNNNGTC	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	1029
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	3 cut(s)	77, 462, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	2 cut(s)	342, 830
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.