RLG00000011590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016350
Physical Location & Seq
Forward (+)
10759555 .. 10770727
11173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011590

Sequence Viewer

Length: 885 bp
ATGGCAGCTATAATGAAATTCCTCTGCATTGCCATCCTTTGCAGCCTCATTATGGGAGGCGATTGTCAACCTTGCTCTGAGAAGAATTTGATTATTCTACAGTCAGCAACGGGAAAGTTGGTTCAAAGTAACCCAGAATGGAATGTAAAGATTACTAACAACTGCATTTGTTCTCAATTGAGTGTTAAGCTGAGTTGTGATGGCTTTCAAACTGTGGAAGAGATTGATCCTACAATCTTGAGCAAATCTGGTAGCTTGTGTCTTGTCAACAGTGGCGAACCTATCCATGGGCATAGCAATTTCAGTTTCACCTATGCGCGGAGCAATTCGTTTCCTTTCAAAACGCTGTTCTCTCAAATTGTTGGTGGTGATTCTGTGGCTAACTGGATTTTGGGAGTTATCTGTGATCTAAAATTGCCGGAGTTACCCTCCATTGCTCCAATTCCGCTGCAAACGAGTTCTCCTATTATTGATAGCATCTCAAGTTCCTTTGGATGGTTGTACTTGAAATTGTCCCTGCTAGATGTACAATATGCGAAAAAAATGAAAACTGACAGCTGGCATATTCTCATTGGGATGAAAACCACTAAAAGTTCTACAGCTAATCAACAAATACCTCATTCTTTGCATCTATGTCTTCCAGTTCATGAAGCTCATGTCAAAATGCGATCAAAACATGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTACTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGGATCCAAACTATTTATTCACTGGCTTCCTTCCATATTTGATGATTCAGCTAAATTAAAATTATGCTGGAGCTTAAAATTATCACAACCAAAGTTCGCAGCCAACCAAGCAAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

32.56

Weight (kDa)

8.96

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 116 6.9e-28 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 720
AccII CGCG 1 cut(s) 319
AciI CCGC 2 cut(s) 319, 446
AclWI GGATC 3 cut(s) 221, 762, 775
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 2 cut(s) 17, 85
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 3 cut(s) 503, 528, 719
AfiI CCNNNNNNNGG 6 cut(s) 52, 287, 318, 495, 706, 720
AgsI TTSAA 5 cut(s) 125, 209, 340, 508, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 718, 750
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 8 cut(s) 8, 190, 255, 558, 602, 653, 815, 837
AluI AGCT 8 cut(s) 8, 190, 255, 558, 602, 653, 815, 837
AlwI GGATC 3 cut(s) 221, 762, 775
AoxI GGCC 1 cut(s) 697
ApeKI GCWGC 4 cut(s) 5, 42, 448, 863
ApoI RAATTY 2 cut(s) 17, 85
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 301, 380
BalI TGGCCA 1 cut(s) 699
BamHI GGATCC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 17, 54, 435, 875
BccI CCATC 4 cut(s) 41, 194, 489, 708
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 2 cut(s) 98, 597
BisI GCNGC 4 cut(s) 6, 43, 449, 864
BlsI GCNGC 4 cut(s) 7, 44, 450, 865
BmiI GGNNCC 1 cut(s) 769
BmsI GCATC 3 cut(s) 486, 637, 719
BpiI GAAGAC 1 cut(s) 629
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 2 cut(s) 742, 853
BpuEI CTTGAG 2 cut(s) 259, 466
BsaAI YACGTR 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 287, 318, 495, 706, 720
Bse1I ACTGG 4 cut(s) 389, 641, 725, 791
Bse3DI GCAATG 2 cut(s) 27, 432
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 4 cut(s) 33, 500, 582, 710
BseLI CCNNNNNNNGG 6 cut(s) 52, 287, 318, 495, 706, 720
BseMI GCAATG 2 cut(s) 27, 432
BseMII CTCAG 2 cut(s) 69, 182
BseNI ACTGG 4 cut(s) 389, 641, 725, 791
BseXI GCAGC 4 cut(s) 17, 54, 435, 875
Bsh1236I CGCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 699
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 6 cut(s) 52, 287, 318, 495, 706, 720
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 1 cut(s) 699
Bsp1407I TGTACA 1 cut(s) 526
Bsp143I GATC 4 cut(s) 226, 406, 668, 767
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 319, 446
BspANI GGCC 1 cut(s) 699
BspCNI CTCAG 2 cut(s) 70, 183
BspFNI CGCG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 769
BspPI GGATC 3 cut(s) 221, 762, 775
BsrDI GCAATG 2 cut(s) 27, 432
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 4 cut(s) 389, 641, 725, 791
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 4 cut(s) 226, 406, 668, 767
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 102, 214, 272
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 560, 682, 877
BstDEI CTNAG 2 cut(s) 78, 191
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 4 cut(s) 33, 500, 582, 710
BstFNI CGCG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 4 cut(s) 229, 409, 671, 770
BstMBI GATC 4 cut(s) 226, 406, 668, 767
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 680
BstSFI CTRYAG 2 cut(s) 98, 597
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 4 cut(s) 17, 54, 435, 875
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BsuRI GGCC 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 4 cut(s) 33, 500, 582, 710
BtsIMutI CAGTG 2 cut(s) 277, 784
Cac8I GCNNGC 3 cut(s) 560, 682, 877
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 319
Csp6I GTAC 3 cut(s) 502, 527, 718
CviAII CATG 4 cut(s) 287, 647, 656, 677
CviQI GTAC 3 cut(s) 502, 527, 718
DdeI CTNAG 2 cut(s) 78, 191
DpnI GATC 4 cut(s) 228, 408, 670, 769
DpnII GATC 4 cut(s) 226, 406, 668, 767
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 747
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 4 cut(s) 290, 650, 659, 680
FaqI GGGAC 1 cut(s) 499
FatI CATG 4 cut(s) 286, 646, 655, 676
Fnu4HI GCNGC 4 cut(s) 6, 43, 449, 864
FokI GGATG 4 cut(s) 20, 507, 589, 697
Fsp4HI GCNGC 4 cut(s) 6, 43, 449, 864
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 6, 43, 449, 864
GsuI CTGGAG 2 cut(s) 742, 853
HaeIII GGCC 1 cut(s) 699
HapII CCGG 1 cut(s) 419
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 290, 650, 659, 680
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 2 cut(s) 68, 268
HindII GTYRAC 2 cut(s) 68, 268
HinfI GANTC 2 cut(s) 371, 809
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 301, 380
Hpy166II GTNNAC 2 cut(s) 68, 268
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 238, 647, 765
Hpy8I GTNNAC 2 cut(s) 68, 268
HpyAV CCTTC 3 cut(s) 695, 771, 804
HpyCH4III ACNGT 3 cut(s) 102, 214, 272
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 7 cut(s) 27, 42, 165, 451, 628, 680, 732
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 2 cut(s) 78, 191
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 4 cut(s) 290, 650, 659, 680
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 4 cut(s) 226, 406, 668, 767
LmnI GCTCC 3 cut(s) 321, 442, 834
Lsp1109I GCAGC 4 cut(s) 17, 54, 435, 875
LweI GCATC 3 cut(s) 486, 637, 719
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 3 cut(s) 128, 423, 755
MalI GATC 4 cut(s) 228, 408, 670, 769
MboI GATC 4 cut(s) 226, 406, 668, 767
MboII GAAGA 3 cut(s) 94, 230, 629
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 767
MlsI TGGCCA 1 cut(s) 699
MluNI TGGCCA 1 cut(s) 699
MnlI CCTC 5 cut(s) 32, 50, 56, 439, 627
Mox20I TGGCCA 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 734
MscI TGGCCA 1 cut(s) 699
MseI TTAA 3 cut(s) 186, 821, 839
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 2 cut(s) 448, 558
MspI CCGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 176
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 872
NcoI CCATGG 1 cut(s) 286
NdeII GATC 4 cut(s) 226, 406, 668, 767
NlaIII CATG 4 cut(s) 290, 650, 659, 680
NlaIV GGNNCC 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 734
NspI RCATGY 1 cut(s) 680
PagI TCATGA 1 cut(s) 646
PfeI GAWTC 2 cut(s) 371, 809
PflMI CCANNNNNTGG 1 cut(s) 720
PkrI GCNGC 4 cut(s) 7, 44, 450, 865
Ppu21I YACGTR 1 cut(s) 717
PspN4I GGNNCC 1 cut(s) 769
PsuI RGATCY 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 3 cut(s) 503, 528, 719
RsaNI GTAC 3 cut(s) 502, 527, 718
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 3 cut(s) 186, 821, 839
SatI GCNGC 4 cut(s) 6, 43, 449, 864
Sau3AI GATC 4 cut(s) 226, 406, 668, 767
SfaNI GCATC 3 cut(s) 486, 637, 719
SfcI CTRYAG 2 cut(s) 98, 597
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 238, 481
SmoI CTYRAG 2 cut(s) 238, 481
SsiI CCGC 2 cut(s) 319, 446
SspMI CTAG 1 cut(s) 521
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 3 cut(s) 102, 214, 272
TaiI ACGT 1 cut(s) 719
TatI WGTACW 2 cut(s) 501, 526
TfiI GAWTC 2 cut(s) 371, 809
Tru1I TTAA 3 cut(s) 186, 821, 839
Tru9I TTAA 3 cut(s) 186, 821, 839
TscAI CASTG 2 cut(s) 277, 791
TseI GCWGC 4 cut(s) 5, 42, 448, 863
TspDTI ATGAA 7 cut(s) 29, 560, 593, 635, 663, 731, 739
TspRI CASTG 2 cut(s) 277, 791
Van91I CCANNNNNTGG 1 cut(s) 720
XapI RAATTY 2 cut(s) 17, 85
XceI RCATGY 1 cut(s) 680
XspI CTAG 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.