FvH4_5g30090

Belongs to the ALG6 ALG8 glucosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
21014771 .. 21021477
6707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30090.t1

Sequence Viewer

Length: 1554 bp
ATGGACAAGAGCTCGAAAAAGAAGGTTAAAATTAGCAATCAAGAGGAGAATGGTGAATCTGATGATGCTTGGTGGTGGCTGGTGCACAAGGGAATCACAGCTTCCTTCCTGTGCATTGCATTGTTTTCTCTTTTGGTTCGAGTGGCAGTGTCACTCCATCCTTACTCTGGTGCTGCAACTCCTCCCAAGTTCGGGGACTTCGAAGCGCAGCGGCATTGGATGGAAATCACCCTCAATCTGCCAGTTAAGGAATGGTACCGTAACACTACACTCAATGATCTCAGCTACTGGGGTTTGGACTACCCTCCTCTCACTGCTTATCAGAGTTATGTCCATGGTCTGTTTGTCAGATTCTTTAGTCCTGAATCAGTTGCTCTTACCACTTCCCGTGGCCATGAGTCCTATTTGGGGAAGCTTCTTATGAGGTGGACAGTGTTATCGTCTGATGCCTTGGTGTTCTTTCCTGCTGTGTTTTACTTTATTGTTGTTTACTATAGTGGCCGTAAGCAAAGTGGTAGTATGGGTGGCATAGCATGGCACATTGCAATTATTTTGCTCAATCCATGCCTGATCTTAATTGACCATGGTCATTTCCAGTACAATTGCATCAGCTTGGGTCTGACTGTGGGAGCTATTTCCGCTATTCTATCTGACAAAGATCTTCTAGCCTGTGTCCTATACAGCCTTGCTCTCAACCACAAACAGATGAGTGCATACTTTGCTCCTGCATTTTTTAGCCATCTTCTGGGTAAATGTATAAGGCGCCGGTATCCACTTCTTGAAGTCTTTAAACTTGGCCTTGTGGTCTCAGTTACGTTTCTTGTGGTCTGGTGGCCATATGTTCACTCAATGGAGGCATTCTTTGGGGTTCTCTCTCGTCTTGCTCCTTTTGAGAGAGGGATATATGAGGACTATGTGGCTAACTTTTGGTGCACCACCTCTGTTCTTGTAAAATGGAAGAGATTGTTTTCAACACCTCAATTGAAGGTTCTCAGCCTTGGTGCAACTATTTCTACTTTTCTGCCTTCAATGATTAAGCAGATATGGGATCCAAGTAAAAAAGGTTTCCTGTATGGGTTGCTGAATAGTGCTTTATCATTTTATCTGTTCTCTTTCCAAGTGCACGAGAAGTCTATTTTGCTGCCTCTCCTACCAGCAAGTCTTTTGGCAAGTGAAGAACCTTTTCTATATACCTGGATGACTCTTTATGCCTTATTCTCGATGTTCCCTCTTCTACATCGTGACAAGCTGGTTTTACCATATCTGGCTATATCTACTCTATTCATACTTTTAAGCGTGGCACCTAATAGAAGACAAGACACAAGGGACACAAATGCTTTCAGATCGTTTGTGACAATATTCTCTCTTTTGTGCTCACTCATTATTCATGTTGTTTATTTAAGCATGAATCCCCCACAAAGATATCCCTTCCTATTTGAAGCTTTAATTATGCTTCTTTGCTTTTCCCAGTTCACATTCCTAGCTATGTATACTAATGCAAAACAATGGATGTTGCTGAAACACTCCAACTATAAAGAAAAGAAGCTCCTTTGA

Protein Analysis

518

Amino Acids

59.38

Weight (kDa)

9.24

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg6_Alg8 PF03155 44 - 495 1.2e-135 ALG6, ALG8 glycosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 3 cut(s) 255, 762, 1300
AccB7I CCANNNNNTGG 1 cut(s) 745
AccI GTMKAC 1 cut(s) 1490
AciI CCGC 2 cut(s) 211, 639
AclWI GGATC 2 cut(s) 1043, 1056
AcoI YGGCCR 3 cut(s) 391, 499, 833
AcyI GRCGYC 1 cut(s) 763
AfaI GTAC 2 cut(s) 257, 599
AfiI CCNNNNNNNGG 5 cut(s) 167, 191, 192, 408, 745
AgsI TTSAA 5 cut(s) 782, 972, 985, 1029, 1439
AjnI CCWGG 1 cut(s) 1193
Alw21I GWGCWC 5 cut(s) 14, 87, 935, 1125, 1376
Alw26I GTCTC 1 cut(s) 811
Alw44I GTGCAC 3 cut(s) 83, 931, 1121
AlwI GGATC 2 cut(s) 1043, 1056
AlwNI CAGNNNCTG 1 cut(s) 288
AoxI GGCC 4 cut(s) 391, 499, 796, 833
ApaLI GTGCAC 3 cut(s) 83, 931, 1121
ApeKI GCWGC 3 cut(s) 173, 208, 1141
Asp700I GAANNNNTTC 1 cut(s) 1182
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 208, 765
AsuHPI GGTGA 2 cut(s) 65, 220
AsuII TTCGAA 1 cut(s) 201
BaeGI GKGCMC 3 cut(s) 87, 935, 1125
BalI TGGCCA 2 cut(s) 393, 835
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 3 cut(s) 255, 762, 1300
BanII GRGCYC 1 cut(s) 14
BauI CACGAG 1 cut(s) 1124
BbsI GAAGAC 1 cut(s) 1318
Bbv12I GWGCWC 5 cut(s) 14, 87, 935, 1125, 1376
BbvI GCAGC 3 cut(s) 160, 220, 1128
BccI CCATC 3 cut(s) 165, 214, 747
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 1195
BciVI GTATCC 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 811
BfaI CTAG 2 cut(s) 665, 1481
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 766
BfuI GTATCC 1 cut(s) 780
BglII AGATCT 1 cut(s) 658
BisI GCNGC 4 cut(s) 174, 209, 212, 1142
BlsI GCNGC 4 cut(s) 175, 210, 213, 1143
Bme1390I CCNGG 1 cut(s) 1195
BmiI GGNNCC 4 cut(s) 257, 764, 1050, 1302
BmrFI CCNGG 1 cut(s) 1195
BmrI ACTGGG 2 cut(s) 298, 1462
BmsI GCATC 3 cut(s) 55, 436, 615
BmuI ACTGGG 2 cut(s) 298, 1462
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 1318
Bpu14I TTCGAA 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 811
BsaJI CCNNGG 5 cut(s) 334, 388, 450, 583, 997
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 191, 192, 408, 745
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 4 cut(s) 242, 293, 595, 1468
Bse3DI GCAATG 2 cut(s) 114, 540
Bse8I GATNNNNATC 1 cut(s) 224
BseBI CCWGG 1 cut(s) 1195
BseDI CCNNGG 5 cut(s) 334, 388, 450, 583, 997
BseGI GGATG 4 cut(s) 157, 225, 1203, 1515
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 5 cut(s) 167, 191, 192, 408, 745
BseMI GCAATG 2 cut(s) 114, 540
BseMII CTCAG 3 cut(s) 295, 822, 1006
BseNI ACTGG 4 cut(s) 242, 293, 595, 1468
BseRI GAGGAG 3 cut(s) 59, 171, 297
BseSI GKGCMC 3 cut(s) 87, 935, 1125
BseXI GCAGC 3 cut(s) 160, 220, 1128
BshFI GGCC 4 cut(s) 393, 501, 798, 835
BshNI GGYRCC 3 cut(s) 255, 762, 1300
BsiHKAI GWGCWC 5 cut(s) 14, 87, 935, 1125, 1376
BsiSI CCGG 1 cut(s) 766
BslFI GGGAC 2 cut(s) 209, 1340
BslI CCNNNNNNNGG 5 cut(s) 167, 191, 192, 408, 745
BsmAI GTCTC 1 cut(s) 811
BsmFI GGGAC 2 cut(s) 209, 1340
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 4 cut(s) 393, 501, 798, 835
Bso31I GGTCTC 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 5 cut(s) 14, 87, 935, 1125, 1376
Bsp143I GATC 5 cut(s) 277, 570, 658, 1048, 1343
Bsp19I CCATGG 2 cut(s) 334, 583
BspACI CCGC 2 cut(s) 211, 639
BspANI GGCC 4 cut(s) 393, 501, 798, 835
BspCNI CTCAG 3 cut(s) 294, 821, 1005
BspLI GGNNCC 4 cut(s) 257, 764, 1050, 1302
BspPI GGATC 2 cut(s) 1043, 1056
BspT104I TTCGAA 1 cut(s) 201
BspT107I GGYRCC 3 cut(s) 255, 762, 1300
BspTNI GGTCTC 1 cut(s) 811
BsrDI GCAATG 2 cut(s) 114, 540
BsrFI RCCGGY 1 cut(s) 765
BsrI ACTGG 4 cut(s) 242, 293, 595, 1468
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 5 cut(s) 334, 388, 450, 583, 997
BssMI GATC 5 cut(s) 277, 570, 658, 1048, 1343
BssNAI GTATAC 1 cut(s) 1491
BssNI GRCGYC 1 cut(s) 763
BssSI CACGAG 1 cut(s) 1124
BssT1I CCWWGG 4 cut(s) 334, 450, 583, 997
Bst1107I GTATAC 1 cut(s) 1491
Bst2BI CACGAG 1 cut(s) 1124
Bst2UI CCWGG 1 cut(s) 1195
Bst4CI ACNGT 3 cut(s) 260, 433, 625
Bst6I CTCTTC 2 cut(s) 953, 1236
BstACI GRCGYC 1 cut(s) 763
BstAPI GCANNNNNTGC 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 281, 808, 992
BstDSI CCRYGG 3 cut(s) 334, 388, 583
BstF5I GGATG 4 cut(s) 157, 225, 1203, 1515
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 2 cut(s) 208, 765
BstKTI GATC 5 cut(s) 280, 573, 661, 1051, 1346
BstMAI GTCTC 1 cut(s) 811
BstMBI GATC 5 cut(s) 277, 570, 658, 1048, 1343
BstMWI GCNNNNNNNGC 2 cut(s) 638, 719
BstNI CCWGG 1 cut(s) 1195
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 1193
BstSFI CTRYAG 1 cut(s) 493
BstSLI GKGCMC 3 cut(s) 87, 935, 1125
BstV1I GCAGC 3 cut(s) 160, 220, 1128
BstV2I GAAGAC 1 cut(s) 1318
BstX2I RGATCY 2 cut(s) 658, 1048
BstYI RGATCY 2 cut(s) 658, 1048
BstZ17I GTATAC 1 cut(s) 1491
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 4 cut(s) 393, 501, 798, 835
BtgI CCRYGG 3 cut(s) 334, 388, 583
BtsCI GGATG 4 cut(s) 157, 225, 1203, 1515
BtsI GCAGTG 2 cut(s) 153, 312
BtsIMutI CAGTG 3 cut(s) 153, 312, 438
CaiI CAGNNNCTG 1 cut(s) 288
CfoI GCGC 2 cut(s) 208, 765
Cfr10I RCCGGY 1 cut(s) 765
Csp6I GTAC 2 cut(s) 256, 598
CviAII CATG 7 cut(s) 335, 395, 534, 564, 584, 1388, 1405
CviQI GTAC 2 cut(s) 256, 598
DdeI CTNAG 3 cut(s) 281, 808, 992
DinI GGCGCC 1 cut(s) 764
DpnI GATC 5 cut(s) 279, 572, 660, 1050, 1345
DpnII GATC 5 cut(s) 277, 570, 658, 1048, 1343
DraI TTTAAA 1 cut(s) 790
EaeI YGGCCR 3 cut(s) 391, 499, 833
Eam1104I CTCTTC 2 cut(s) 953, 1236
EarI CTCTTC 2 cut(s) 953, 1236
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 4 cut(s) 334, 450, 583, 997
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 811
Eco32I GATATC 1 cut(s) 1424
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 1193
EcoRV GATATC 1 cut(s) 1424
EcoT14I CCWWGG 4 cut(s) 334, 450, 583, 997
EcoT38I GRGCYC 1 cut(s) 14
EgeI GGCGCC 1 cut(s) 764
EheI GGCGCC 1 cut(s) 764
ErhI CCWWGG 4 cut(s) 334, 450, 583, 997
FaeI CATG 7 cut(s) 338, 398, 537, 567, 587, 1391, 1408
FaqI GGGAC 2 cut(s) 209, 1340
FatI CATG 7 cut(s) 334, 394, 533, 563, 583, 1387, 1404
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 1490
Fnu4HI GCNGC 4 cut(s) 174, 209, 212, 1142
FokI GGATG 4 cut(s) 144, 232, 1210, 1522
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 174, 209, 212, 1142
FspBI CTAG 2 cut(s) 665, 1481
GlaI GCGC 2 cut(s) 207, 764
GluI GCNGC 4 cut(s) 174, 209, 212, 1142
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 4 cut(s) 393, 501, 798, 835
HapII CCGG 1 cut(s) 766
HhaI GCGC 2 cut(s) 208, 765
Hin1I GRCGYC 1 cut(s) 763
Hin1II CATG 7 cut(s) 338, 398, 537, 567, 587, 1391, 1408
Hin6I GCGC 2 cut(s) 206, 763
HinP1I GCGC 2 cut(s) 206, 763
HindIII AAGCTT 2 cut(s) 413, 1440
HinfI GANTC 7 cut(s) 56, 93, 351, 365, 398, 1201, 1408
HpaII CCGG 1 cut(s) 766
HphI GGTGA 2 cut(s) 65, 220
Hpy166II GTNNAC 8 cut(s) 85, 429, 490, 844, 933, 1123, 1473, 1491
Hpy188I TCNGA 7 cut(s) 61, 324, 350, 445, 621, 652, 1343
Hpy188III TCNNGA 5 cut(s) 41, 362, 779, 1219, 1241
Hpy8I GTNNAC 8 cut(s) 85, 429, 490, 844, 933, 1123, 1473, 1491
HpyAV CCTTC 5 cut(s) 16, 115, 979, 1035, 1438
HpyCH4III ACNGT 3 cut(s) 260, 433, 625
HpyCH4IV ACGT 1 cut(s) 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 638, 719
HpyF3I CTNAG 3 cut(s) 281, 808, 992
HpySE526I ACGT 1 cut(s) 815
Hsp92I GRCGYC 1 cut(s) 763
Hsp92II CATG 7 cut(s) 338, 398, 537, 567, 587, 1391, 1408
HspAI GCGC 2 cut(s) 206, 763
KasI GGCGCC 1 cut(s) 762
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 5 cut(s) 277, 570, 658, 1048, 1343
LmnI GCTCC 4 cut(s) 629, 727, 889, 1551
Lsp1109I GCAGC 3 cut(s) 160, 220, 1128
LweI GCATC 3 cut(s) 55, 436, 615
MaeI CTAG 2 cut(s) 665, 1481
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 5 cut(s) 150, 260, 811, 1241, 1351
MalI GATC 5 cut(s) 279, 572, 660, 1050, 1345
MboI GATC 5 cut(s) 277, 570, 658, 1048, 1343
MboII GAAGA 6 cut(s) 653, 734, 970, 1187, 1223, 1323
MfeI CAATTG 2 cut(s) 601, 980
MflI RGATCY 2 cut(s) 658, 1048
MhlI GDGCHC 5 cut(s) 14, 87, 935, 1125, 1376
MlsI TGGCCA 2 cut(s) 393, 835
MluCI AATT 6 cut(s) 30, 546, 576, 601, 980, 1446
MluNI TGGCCA 2 cut(s) 393, 835
Mly113I GGCGCC 1 cut(s) 763
MlyI GAGTC 2 cut(s) 407, 1195
MmeI TCCRAC 1 cut(s) 1551
Mox20I TGGCCA 2 cut(s) 393, 835
MroXI GAANNNNTTC 1 cut(s) 1182
MscI TGGCCA 2 cut(s) 393, 835
MseI TTAA 8 cut(s) 27, 246, 575, 789, 1035, 1292, 1400, 1445
Msp20I TGGCCA 2 cut(s) 393, 835
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 766
MspR9I CCNGG 1 cut(s) 1195
MunI CAATTG 2 cut(s) 601, 980
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 1 cut(s) 1195
MwoI GCNNNNNNNGC 2 cut(s) 638, 719
NarI GGCGCC 1 cut(s) 763
NcoI CCATGG 2 cut(s) 334, 583
NdeI CATATG 1 cut(s) 838
NdeII GATC 5 cut(s) 277, 570, 658, 1048, 1343
NlaIII CATG 7 cut(s) 338, 398, 537, 567, 587, 1391, 1408
NlaIV GGNNCC 4 cut(s) 257, 764, 1050, 1302
NmuCI GTSAC 3 cut(s) 150, 1241, 1351
NspV TTCGAA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 857
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 5 cut(s) 56, 93, 351, 365, 1408
PflMI CCANNNNNTGG 1 cut(s) 745
PkrI GCNGC 4 cut(s) 175, 210, 213, 1143
PleI GAGTC 2 cut(s) 406, 1195
PluTI GGCGCC 1 cut(s) 766
PpsI GAGTC 2 cut(s) 406, 1195
PshAI GACNNNNGTC 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 1193
PspGI CCWGG 1 cut(s) 1193
PspN4I GGNNCC 4 cut(s) 257, 764, 1050, 1302
PstNI CAGNNNCTG 1 cut(s) 288
PsuI RGATCY 2 cut(s) 658, 1048
RsaI GTAC 2 cut(s) 257, 599
RsaNI GTAC 2 cut(s) 256, 598
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 8 cut(s) 27, 246, 575, 789, 1035, 1292, 1400, 1445
SatI GCNGC 4 cut(s) 174, 209, 212, 1142
Sau3AI GATC 5 cut(s) 277, 570, 658, 1048, 1343
SchI GAGTC 2 cut(s) 407, 1195
ScrFI CCNGG 1 cut(s) 1195
SduI GDGCHC 5 cut(s) 14, 87, 935, 1125, 1376
SfaNI GCATC 3 cut(s) 55, 436, 615
SfcI CTRYAG 1 cut(s) 493
SfoI GGCGCC 1 cut(s) 764
SfuI TTCGAA 1 cut(s) 201
Sse9I AATT 6 cut(s) 30, 546, 576, 601, 980, 1446
SsiI CCGC 2 cut(s) 211, 639
SspDI GGCGCC 1 cut(s) 762
SspI AATATT 1 cut(s) 1359
SspMI CTAG 2 cut(s) 665, 1481
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 1193
StyI CCWWGG 4 cut(s) 334, 450, 583, 997
TaaI ACNGT 3 cut(s) 260, 433, 625
TaiI ACGT 1 cut(s) 818
TaqI TCGA 4 cut(s) 14, 139, 201, 1220
TasI AATT 6 cut(s) 30, 546, 576, 601, 980, 1446
TatI WGTACW 1 cut(s) 597
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 5 cut(s) 56, 93, 351, 365, 1408
Tru1I TTAA 8 cut(s) 27, 246, 575, 789, 1035, 1292, 1400, 1445
Tru9I TTAA 8 cut(s) 27, 246, 575, 789, 1035, 1292, 1400, 1445
TscAI CASTG 3 cut(s) 153, 319, 438
TseFI GTSAC 3 cut(s) 150, 1241, 1351
TseI GCWGC 3 cut(s) 173, 208, 1141
Tsp45I GTSAC 3 cut(s) 150, 1241, 1351
TspDTI ATGAA 3 cut(s) 1273, 1376, 1421
TspRI CASTG 3 cut(s) 153, 319, 438
Van91I CCANNNNNTGG 1 cut(s) 745
VneI GTGCAC 3 cut(s) 83, 931, 1121
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 249
XmiI GTMKAC 1 cut(s) 1490
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 2 cut(s) 665, 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.