Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031737.1

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Reverse (-)

504 .. 1427

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031737.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcgaagagctcaaaaaagagcaaagaagaagaggagattgttgattctggcgacgatgcttggtggtggttggtgcacaagggaattacaccttcattcttttgcattgcattgttttcccttttggttcgagtcgctgtctcactccatccttactccggtgctgcaactcctcccaagttcggcgactttgaagcccagcggcattggatggaaatcacccttaatctcccgctcaatgaatggtatcgaaacactacccgcaatgatctcagctactggggtctcgactaccctcctctcactgcttatcagagttatgtccatgggcttttcatcagattctttagtcctgaatcagttgctcttttcacctcccgcggccacgagtcctatttggggaaacttcttatgaggtggacagtgttatcgtccgatgccttggtgttctttcctgctgttttttattttattgctgtttactatagtgggcgtaatcagaggggccgtatgggtggcatagcatggcacattgcaataattttactcaatccgtgcctgatcttaattgatcatggtcatttccagtacaattgtatcagcttgggtctgacgctgggagctattgctgctattctttctgacaaagatcttctagcctgtgtcttatacagccttgctctcaaccacaaacaggtatcgtttgattcagtttgggccacatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

243

Amino Acids

27.58

Weight (kDa)

6.74

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	238
AccII	CGCG	1 cut(s)	384
AciI	CCGC	5 cut(s)	205, 236, 265, 382, 384
AcoI	YGGCCR	1 cut(s)	385
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	161, 185, 402, 697
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	4 cut(s)	12, 279, 606, 626
AluI	AGCT	4 cut(s)	12, 279, 606, 626
Alw21I	GWGCWC	2 cut(s)	14, 81
Alw26I	GTCTC	2 cut(s)	148, 293
Alw44I	GTGCAC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	282
AoxI	GGCC	3 cut(s)	385, 508, 720
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	167, 632
AspS9I	GGNCC	2 cut(s)	508, 720
AsuHPI	GGTGA	2 cut(s)	214, 367
BaeGI	GKGCMC	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	583, 616
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	2 cut(s)	14, 81
BbvI	GCAGC	2 cut(s)	154, 619
BccI	CCATC	2 cut(s)	159, 208
BceAI	ACGGC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	148, 293
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	487
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	4 cut(s)	168, 206, 385, 633
BlsI	GCNGC	4 cut(s)	169, 207, 386, 634
BmgT120I	GGNCC	2 cut(s)	508, 720
BmiI	GGNNCC	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	49, 430
BmuI	ACTGGG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	328, 382, 444
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 185, 402, 697
Bse1I	ACTGG	2 cut(s)	287, 589
Bse3DI	GCAATG	3 cut(s)	108, 274, 534
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	328, 382, 444
BseGI	GGATG	3 cut(s)	151, 219, 725
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	4 cut(s)	161, 185, 402, 697
BseMI	GCAATG	3 cut(s)	108, 274, 534
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	287, 589
BseRI	GAGGAG	3 cut(s)	50, 165, 291
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	154, 619
BseYI	CCCAGC	2 cut(s)	201, 619
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	387, 510, 722
BsiHKAI	GWGCWC	2 cut(s)	14, 81
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	4 cut(s)	161, 185, 402, 697
BsmAI	GTCTC	2 cut(s)	148, 293
BsnI	GGCC	3 cut(s)	387, 510, 722
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	14, 81
Bsp143I	GATC	4 cut(s)	271, 564, 574, 652
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	5 cut(s)	205, 236, 265, 382, 384
BspANI	GGCC	3 cut(s)	387, 510, 722
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	3 cut(s)	108, 274, 534
BsrI	ACTGG	2 cut(s)	287, 589
BssECI	CCNNGG	3 cut(s)	328, 382, 444
BssMI	GATC	4 cut(s)	271, 564, 574, 652
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	328, 444
Bst2BI	CACGAG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	2 cut(s)	2, 27
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	2 cut(s)	328, 382
BstF5I	GGATG	3 cut(s)	151, 219, 725
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	4 cut(s)	274, 567, 577, 655
BstMAI	GTCTC	2 cut(s)	148, 293
BstMBI	GATC	4 cut(s)	271, 564, 574, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	154, 619
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	387, 510, 722
BtgI	CCRYGG	2 cut(s)	328, 382
BtsCI	GGATG	3 cut(s)	151, 219, 725
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 432
CaiI	CAGNNNCTG	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	508, 720
Cfr42I	CCGCGG	1 cut(s)	385
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	3 cut(s)	329, 528, 578
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	4 cut(s)	273, 566, 576, 654
DpnII	GATC	4 cut(s)	271, 564, 574, 652
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	2, 27
EarI	CTCTTC	2 cut(s)	2, 27
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	328, 444
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	328, 444
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	328, 444
FaeI	CATG	3 cut(s)	332, 531, 581
FaiI	YATR	9 cut(s)	324, 330, 416, 489, 515, 524, 529, 579, 673
FatI	CATG	3 cut(s)	328, 527, 577
FauI	CCCGC	3 cut(s)	243, 272, 389
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	168, 206, 385, 633
FokI	GGATG	3 cut(s)	138, 226, 712
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	168, 206, 385, 633
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	4 cut(s)	168, 206, 385, 633
GsaI	CCCAGC	2 cut(s)	205, 623
HaeIII	GGCC	3 cut(s)	387, 510, 722
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	625
Hin1II	CATG	3 cut(s)	332, 531, 581
HinfI	GANTC	6 cut(s)	47, 135, 345, 359, 392, 710
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	214, 367
Hpy166II	GTNNAC	3 cut(s)	79, 423, 484
Hpy188I	TCNGA	6 cut(s)	318, 344, 439, 504, 615, 646
Hpy188III	TCNNGA	3 cut(s)	290, 356, 729
Hpy8I	GTNNAC	3 cut(s)	79, 423, 484
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	79, 108, 113, 170, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	332, 531, 581
Ksp22I	TGATCA	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	271, 564, 574, 652
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	2 cut(s)	154, 619
LweI	GCATC	2 cut(s)	49, 430
MaeI	CTAG	1 cut(s)	659
MalI	GATC	4 cut(s)	273, 566, 576, 654
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	4 cut(s)	271, 564, 574, 652
MboII	GAAGA	4 cut(s)	19, 41, 44, 647
MfeI	CAATTG	1 cut(s)	595
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	14, 81
MluCI	AATT	4 cut(s)	87, 543, 570, 595
MlyI	GAGTC	2 cut(s)	144, 401
MnlI	CCTC	7 cut(s)	28, 186, 309, 312, 388, 411, 498
MseI	TTAA	2 cut(s)	228, 569
MspA1I	CMGCKG	2 cut(s)	205, 384
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	595
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	632
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	271, 564, 574, 652
NlaIII	CATG	3 cut(s)	332, 531, 581
NlaIV	GGNNCC	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	4 cut(s)	47, 345, 359, 710
PkrI	GCNGC	4 cut(s)	169, 207, 386, 634
PleI	GAGTC	2 cut(s)	143, 400
PpsI	GAGTC	2 cut(s)	143, 400
Psp124BI	GAGCTC	1 cut(s)	14
PspFI	CCCAGC	2 cut(s)	201, 619
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	508, 720
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	14
SacII	CCGCGG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	2 cut(s)	228, 569
SatI	GCNGC	4 cut(s)	168, 206, 385, 633
Sau3AI	GATC	4 cut(s)	271, 564, 574, 652
Sau96I	GGNCC	2 cut(s)	508, 720
SchI	GAGTC	2 cut(s)	144, 401
SduI	GDGCHC	2 cut(s)	14, 81
SetI	ASST	8 cut(s)	14, 97, 281, 380, 422, 608, 628, 702
SfaNI	GCATC	2 cut(s)	49, 430
SfcI	CTRYAG	1 cut(s)	487
Sfr303I	CCGCGG	1 cut(s)	385
SgrBI	CCGCGG	1 cut(s)	385
Sse9I	AATT	4 cut(s)	87, 543, 570, 595
SsiI	CCGC	5 cut(s)	205, 236, 265, 382, 384
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	328, 444
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	133, 253, 291
TasI	AATT	4 cut(s)	87, 543, 570, 595
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	2 cut(s)	208, 387
TfiI	GAWTC	4 cut(s)	47, 345, 359, 710
Tru1I	TTAA	2 cut(s)	228, 569
Tru9I	TTAA	2 cut(s)	228, 569
TscAI	CASTG	2 cut(s)	313, 432
TseI	GCWGC	2 cut(s)	167, 632
TspDTI	ATGAA	3 cut(s)	87, 258, 328
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	313, 432
VneI	GTGCAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.