Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Reverse (-)

20099903 .. 20102755

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0222400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2853 bp

ATGCATTCTGGTTTGGTTGGGCTTCTGTGCCTGGCCATTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTTCAGCAACATCATGTGCTTGGAGAGTGAAAGGCATGCTCTTCTCCAGTTCAAACAAGGCCTTGTGGATGAGTCCAATGCTCTTGCTTCTTGGAAAAGTGAGAAAGATTGCTGCAAGTGGAGAGGAATAGCGTGCAACAACCAAACAGGTCATGTCACCAGTCTTGATTTCTCCTTTAATTATGATCCATATTTCATCAATTCTACTGAAGTTCCTTTAAGAGGTGAAATTAGTCCTTCACTACTTGAATTGCAATATCTAAATTACTTGGACCTCAGTTTTAATGATTTTGGAGGAATGATCATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGATGCTAATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTGATTTGCATACTCTCGATCTTTCCTACAACATACATGTTCGTTCAGAAAATATTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACATGAACATGTCAGGAGTAGAATTGTCTAAGGTTGTGAATTGGCCACAATCTTTAAGCAAGCTCACTGTGCTGACAGAGCTTCAGTTATCCCAGTGTAGCCTTCCTGATGTCAATCTAAGATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCAACTCCTTGACCTTTCTTGGAACTCACTTAATTCTTCAATATTTTATTGGATAGCCAATGTCAGCAGCAACTTTATCCATATTGATCTCTCTTCCAACAATCTTGACGGTCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTAGATCTGTCTGAGAATCAACTTGACAGTCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTAGATCTGTCTTGGAATCAACTTGAAGGTGGGATACCAAAAGGCTTTCAAAACTTATGCAGCTTAGAGTCGTTGGGATTAGCTAAAAACCAATTGTCTGAAAACATTGAGGACTCTGTTAAAGCCTTGTCTTGTGCTGAGAACACACTTGAGACCTTGGACTTGAGTGCTAACCAGTTTTGGGGGTCATGGCCAGATTTGAAACGTTTTTCAAAGTTAAGAGTGTTAGATCTTAGCATGAATGAAATAAATGGGTCTGTACCCGAGAGTGTTGGGCAACTCTCTAGCCTTGAAGTACTATCTCTCTTCGATAATTCTTTCACTGGTGTCATAACAGAATCACATTTTCTGAACCTCTCTCGTTTACAGAGTTTGGATATTTCTTATAATCGTTTCTCTATCAATCTGAGCTCTAATTGGAATCCACCATTTCAACTGACCGATCAGTTAGGCTTGTCCTCTCTGAAGGTGGGCCTAGCTTTTCCCAAATGGATTCTAAGGCAAACAAATCTTACAGGTCTTTATCTTTCTAATGCTGGACTATCAGGATCATTACCTAACAAGTTTTGGGATCTATTTTCTGGCTTATCTTATTTAGTTCTCTCTGACAACAAAATCCATGGAAAACTGCCGAATCTGTCATCGACAAGTTTACAGTATGTTTACTTGTCTTCTAATCTATTTTCTGGCGCATTGCCATCATTTTCTCCTCGGCTAGAACAGATGTATCTCTCGAATAATAGCTTTTCAGGACCCTTGTCTTCCTTATGTGCAACGCAGGCTCCATATTTATATGTGATTGAGATTTTCGAGAACCTACTGTCAGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAAAATTGCAAATATTGAGATTGGAAAAAAATAAATTATCTGGAAAAATACCAAGTTCTTTAGGCAATCTAAAGAGACTTGCGTTATTGCTTTTAAAAGGTAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCAAATTATTGATGGTTGACCTTGGCGACAATAACCTGTCGGGAAAGATACCAACATGGATAGGCCAAAGCCTTACAAACTTGGTGATTCTACGGTTACGGTCCAATGAGTTCAATGGAATCATACCTTTCTCCTTGTGCAGTCTAGCCACCATTCATCTTTTGGACCTCTCTCACAACAATATTTCAGGAGCATTACCAGATTGCTTCAATAACATAACAGCTTTGGCTGATGATTTCGTTGCTTTTGCTTATATGGCTGTAGAACTCGTGTGGAAAAATATAGAGATTAAGTTTGCAGACAATCTTTGGCATTTGAGAAGCATTGACATTTCAAGCAATTCTTTTGTTGGGGAAATTCCAGAAACCATCACGAGTATGCAAAAGTTGATTTCTCTCAACCTCTCAAGAAACAAATTTACAGGAAAACTTCCTGAAAACTTCGGTAACATGAAGAAGTTAGAATCTCTTGATTTGTCAAGAAACCAGATATCTGGTCAAATTCCTGCAAGTTTTGCGAGCTTAAACTTTCTTAGTGTCTTGGACTTATCACACAACAACTTGTCAGGAAGAATTCCATTAGGCACCCAACTTCAGGGTTTTAATGCTTCTGCATATATGGAAAATCTTGGACTTTGTGGACTACCGCTGACACAAAGTTGTCCAGGAGATGGAACAGTTCAAGATGATGGAATCACGAGAGGCACTGAAACTGTTAATGATGGTCTCATAAGCCTGGGATTCTTTATCAGTGCAGTGCTGGGATTTGTCACTGGATTTTGGATGGTCTGCGGCAGTTTACTGCTTAAGACTTCTTGGAGATATGCTTATTTCAGATTCCTAGACAATGCAAAAGATTGGATCTATGTCAAAACTGCTGTGTACAAGGCAAAAGTGCGGAGGACACTTCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

950

Amino Acids

105.2

Weight (kDa)

5.35

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 70	8.8e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	101 - 250	8.9e-09	Leucine-rich repeat region
LRR_8	PF13855	266 - 321	1.7e-08	Leucine rich repeat
LRR_8	PF13855	362 - 419	6.6e-06	Leucine rich repeat
LRR_14	PF23598	738 - 830	2.8e-07	Leucine-rich repeat region
LRR_8	PF13855	750 - 809	1.4e-10	Leucine rich repeat
LRR_8	PF13855	790 - 833	6.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1326
AccB1I	GGYRCC	1 cut(s)	2519
AccB7I	CCANNNNNTGG	1 cut(s)	2606
AciI	CCGC	3 cut(s)	2582, 2727, 2833
AclI	AACGTT	1 cut(s)	1144
AclWI	GGATC	4 cut(s)	251, 1495, 1518, 2804
AcoI	YGGCCR	3 cut(s)	33, 602, 1130
AcsI	RAATTY	4 cut(s)	2292, 2351, 2436, 2508
AcuI	CTGAAG	5 cut(s)	58, 300, 626, 1424, 2513
AfaI	GTAC	4 cut(s)	1200, 1236, 1936, 2819
AfiI	CCNNNNNNNGG	5 cut(s)	293, 461, 1120, 2530, 2606
AflII	CTTAAG	1 cut(s)	2741
AflIII	ACRYGT	2 cut(s)	508, 567
AjnI	CCWGG	3 cut(s)	30, 2599, 2670
Alw21I	GWGCWC	1 cut(s)	1352
Alw26I	GTCTC	3 cut(s)	1085, 1864, 2666
AlwI	GGATC	4 cut(s)	251, 1495, 1518, 2804
Ama87I	CYCGRG	1 cut(s)	1202
AoxI	GGCC	6 cut(s)	33, 130, 602, 1130, 1411, 1999
ApeKI	GCWGC	3 cut(s)	183, 780, 999
ApoI	RAATTY	4 cut(s)	2292, 2351, 2436, 2508
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	1631
AspS9I	GGNCC	7 cut(s)	343, 443, 824, 1411, 1691, 2037, 2101
AsuHPI	GGTGA	3 cut(s)	220, 308, 2032
AvaI	CYCGRG	1 cut(s)	1202
AvaII	GGWCC	6 cut(s)	343, 443, 824, 1691, 2037, 2101
BaeI	ACNNNNGTAYC	2 cut(s)	1649, 1682
BalI	TGGCCA	3 cut(s)	35, 604, 1132
BanI	GGYRCC	1 cut(s)	2519
BanII	GRGCYC	1 cut(s)	1352
BarI	GAAGNNNNNNTAC	2 cut(s)	957, 989
BauI	CACGAG	3 cut(s)	2204, 2308, 2632
BbsI	GAAGAC	4 cut(s)	832, 904, 1602, 1692
Bbv12I	GWGCWC	1 cut(s)	1352
BbvI	GCAGC	3 cut(s)	170, 792, 1011
BccI	CCATC	9 cut(s)	836, 908, 1645, 1942, 2312, 2600, 2618, 2651, 2713
BciT130I	CCWGG	3 cut(s)	32, 2601, 2672
BciVI	GTATCC	1 cut(s)	966
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	1085, 1864, 2666
BfaI	CTAG	9 cut(s)	860, 869, 932, 941, 1224, 1415, 1655, 2081, 2777
BfmI	CTRYAG	1 cut(s)	2196
BfrI	CTTAAG	1 cut(s)	2741
BfuI	GTATCC	1 cut(s)	966
BglII	AGATCT	3 cut(s)	871, 943, 1168
BisI	GCNGC	4 cut(s)	184, 781, 1000, 2728
BlsI	GCNGC	4 cut(s)	185, 782, 1001, 2729
BmcAI	AGTACT	1 cut(s)	1236
Bme1390I	CCNGG	3 cut(s)	32, 2601, 2672
Bme18I	GGWCC	6 cut(s)	343, 443, 824, 1691, 2037, 2101
BmeT110I	CYCGRG	1 cut(s)	1202
BmgT120I	GGNCC	7 cut(s)	343, 443, 824, 1411, 1691, 2037, 2101
BmiI	GGNNCC	4 cut(s)	826, 1693, 1722, 2521
BmrFI	CCNGG	3 cut(s)	32, 2601, 2672
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	418, 1776
BmuI	ACTGGG	1 cut(s)	646
BoxI	GACNNNNGTC	1 cut(s)	1696
BpiI	GAAGAC	4 cut(s)	832, 904, 1602, 1692
BpmI	CTGGAG	1 cut(s)	101
BpuEI	CTTGAG	4 cut(s)	574, 1109, 1123, 2326
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	2 cut(s)	1085, 2666
BsaJI	CCNNGG	5 cut(s)	1095, 1558, 1649, 1957, 2671
BsaXI	ACNNNNNCTCC	2 cut(s)	1705, 1735
Bsc4I	CCNNNNNNNGG	5 cut(s)	293, 461, 1120, 2530, 2606
Bse1I	ACTGG	6 cut(s)	118, 231, 652, 1114, 1267, 2713
Bse3DI	GCAATG	2 cut(s)	36, 1631
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	3 cut(s)	32, 2601, 2672
BseDI	CCNNGG	5 cut(s)	1095, 1558, 1649, 1957, 2671
BseGI	GGATG	5 cut(s)	145, 828, 900, 1791, 2724
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	5 cut(s)	293, 461, 1120, 2530, 2606
BseMI	GCAATG	2 cut(s)	36, 1631
BseMII	CTCAG	4 cut(s)	361, 870, 1068, 1337
BseNI	ACTGG	6 cut(s)	118, 231, 652, 1114, 1267, 2713
BseRI	GAGGAG	1 cut(s)	1638
BseXI	GCAGC	3 cut(s)	170, 792, 1011
BseYI	CCCAGC	1 cut(s)	2695
BsgI	GTGCAG	2 cut(s)	2095, 2709
BshFI	GGCC	6 cut(s)	35, 132, 604, 1132, 1413, 2001
BshNI	GGYRCC	1 cut(s)	2519
BsiHKAI	GWGCWC	1 cut(s)	1352
BsiHKCI	CYCGRG	1 cut(s)	1202
BslFI	GGGAC	2 cut(s)	810, 882
BslI	CCNNNNNNNGG	5 cut(s)	293, 461, 1120, 2530, 2606
BsmAI	GTCTC	3 cut(s)	1085, 1864, 2666
BsmFI	GGGAC	2 cut(s)	810, 882
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	6 cut(s)	35, 132, 604, 1132, 1413, 2001
Bso31I	GGTCTC	2 cut(s)	1085, 2666
BsoBI	CYCGRG	1 cut(s)	1202
Bsp1286I	GDGCHC	1 cut(s)	1352
Bsp1407I	TGTACA	1 cut(s)	2817
Bsp19I	CCATGG	1 cut(s)	1558
BspACI	CCGC	3 cut(s)	2582, 2727, 2833
BspANI	GGCC	6 cut(s)	35, 132, 604, 1132, 1413, 2001
BspCNI	CTCAG	4 cut(s)	360, 871, 1069, 1338
BspLI	GGNNCC	4 cut(s)	826, 1693, 1722, 2521
BspPI	GGATC	4 cut(s)	251, 1495, 1518, 2804
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	2519
BspTI	CTTAAG	1 cut(s)	2741
BspTNI	GGTCTC	2 cut(s)	1085, 2666
BsrDI	GCAATG	2 cut(s)	36, 1631
BsrGI	TGTACA	1 cut(s)	2817
BsrI	ACTGG	6 cut(s)	118, 231, 652, 1114, 1267, 2713
BssECI	CCNNGG	5 cut(s)	1095, 1558, 1649, 1957, 2671
BssSI	CACGAG	3 cut(s)	2204, 2308, 2632
BssT1I	CCWWGG	3 cut(s)	1095, 1558, 1957
Bst2BI	CACGAG	3 cut(s)	2204, 2308, 2632
Bst2UI	CCWGG	3 cut(s)	32, 2601, 2672
Bst6I	CTCTTC	4 cut(s)	117, 717, 811, 1250
BstAFI	CTTAAG	1 cut(s)	2741
BstAPI	GCANNNNNTGC	1 cut(s)	2450
BstAUI	TGTACA	1 cut(s)	2817
BstC8I	GCNNGC	7 cut(s)	108, 205, 620, 851, 923, 1719, 2455
BstDSI	CCRYGG	1 cut(s)	1558
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	145, 828, 900, 1791, 2724
BstHHI	GCGC	1 cut(s)	1631
BstMAI	GTCTC	3 cut(s)	1085, 1864, 2666
BstMWI	GCNNNNNNNGC	5 cut(s)	628, 637, 1718, 2192, 2450
BstNI	CCWGG	3 cut(s)	32, 2601, 2672
BstNSI	RCATGY	5 cut(s)	110, 512, 571, 853, 925
BstPAI	GACNNNNGTC	1 cut(s)	1696
BstSCI	CCNGG	3 cut(s)	30, 2599, 2670
BstSFI	CTRYAG	1 cut(s)	2196
BstV1I	GCAGC	3 cut(s)	170, 792, 1011
BstV2I	GAAGAC	4 cut(s)	832, 904, 1602, 1692
BstX2I	RGATCY	5 cut(s)	871, 943, 1168, 1510, 2796
BstXI	CCANNNNNNTGG	1 cut(s)	2429
BstYI	RGATCY	5 cut(s)	871, 943, 1168, 1510, 2796
BsuI	GTATCC	1 cut(s)	966
BsuRI	GGCC	6 cut(s)	35, 132, 604, 1132, 1413, 2001
BtgI	CCRYGG	1 cut(s)	1558
BtsCI	GGATG	5 cut(s)	145, 828, 900, 1791, 2724
BtsI	GCAGTG	1 cut(s)	2697
BtsIMutI	CAGTG	8 cut(s)	445, 624, 659, 1260, 2640, 2692, 2697, 2706
Cac8I	GCNNGC	7 cut(s)	108, 205, 620, 851, 923, 1719, 2455
CfoI	GCGC	1 cut(s)	1631
Cfr13I	GGNCC	7 cut(s)	343, 443, 824, 1411, 1691, 2037, 2101
Csp6I	GTAC	4 cut(s)	1199, 1235, 1935, 2818
CviQI	GTAC	4 cut(s)	1199, 1235, 1935, 2818
DraI	TTTAAA	1 cut(s)	1890
EaeI	YGGCCR	3 cut(s)	33, 602, 1130
Eam1104I	CTCTTC	4 cut(s)	117, 717, 811, 1250
EarI	CTCTTC	4 cut(s)	117, 717, 811, 1250
Ecl136II	GAGCTC	1 cut(s)	1350
Eco130I	CCWWGG	3 cut(s)	1095, 1558, 1957
Eco147I	AGGCCT	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	1352
Eco31I	GGTCTC	2 cut(s)	1085, 2666
Eco32I	GATATC	1 cut(s)	2427
Eco47I	GGWCC	6 cut(s)	343, 443, 824, 1691, 2037, 2101
Eco53kI	GAGCTC	1 cut(s)	1350
Eco57I	CTGAAG	5 cut(s)	58, 300, 626, 1424, 2513
Eco88I	CYCGRG	1 cut(s)	1202
EcoICRI	GAGCTC	1 cut(s)	1350
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	1691
EcoRI	GAATTC	1 cut(s)	2508
EcoRII	CCWGG	3 cut(s)	30, 2599, 2670
EcoRV	GATATC	1 cut(s)	2427
EcoT14I	CCWWGG	3 cut(s)	1095, 1558, 1957
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1352
ErhI	CCWWGG	3 cut(s)	1095, 1558, 1957
FalI	AAGNNNNNCTT	2 cut(s)	2263, 2295
FaqI	GGGAC	2 cut(s)	810, 882
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	184, 781, 1000, 2728
FokI	GGATG	5 cut(s)	152, 815, 887, 1798, 2731
FriOI	GRGCYC	1 cut(s)	1352
Fsp4HI	GCNGC	4 cut(s)	184, 781, 1000, 2728
FspBI	CTAG	9 cut(s)	860, 869, 932, 941, 1224, 1415, 1655, 2081, 2777
GlaI	GCGC	1 cut(s)	1630
GluI	GCNGC	4 cut(s)	184, 781, 1000, 2728
GsaI	CCCAGC	1 cut(s)	2699
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	6 cut(s)	35, 132, 604, 1132, 1413, 2001
HhaI	GCGC	1 cut(s)	1631
Hin6I	GCGC	1 cut(s)	1629
HinP1I	GCGC	1 cut(s)	1629
HincII	GTYRAC	1 cut(s)	1954
HindII	GTYRAC	1 cut(s)	1954
HindIII	AAGCTT	1 cut(s)	70
HphI	GGTGA	3 cut(s)	220, 308, 2032
Hpy166II	GTNNAC	8 cut(s)	443, 1304, 1592, 1603, 1954, 2576, 2735, 2818
Hpy188I	TCNGA	9 cut(s)	475, 520, 880, 1039, 1290, 1347, 1404, 1546, 2771
Hpy8I	GTNNAC	8 cut(s)	443, 1304, 1592, 1603, 1954, 2576, 2735, 2818
HpyAV	CCTTC	5 cut(s)	318, 671, 959, 1399, 1929
HpyCH4IV	ACGT	1 cut(s)	1144
HpyF10VI	GCNNNNNNNGC	5 cut(s)	628, 637, 1718, 2192, 2450
HpySE526I	ACGT	1 cut(s)	1144
HspAI	GCGC	1 cut(s)	1629
Ksp22I	TGATCA	1 cut(s)	372
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	1726, 1768, 2126
Lsp1109I	GCAGC	3 cut(s)	170, 792, 1011
LweI	GCATC	2 cut(s)	418, 1776
MaeI	CTAG	9 cut(s)	860, 869, 932, 941, 1224, 1415, 1655, 2081, 2777
MaeII	ACGT	1 cut(s)	1144
MaeIII	GTNAC	7 cut(s)	226, 862, 934, 1895, 2031, 2381, 2704
MfeI	CAATTG	2 cut(s)	404, 1031
MflI	RGATCY	5 cut(s)	871, 943, 1168, 1510, 2796
MhlI	GDGCHC	1 cut(s)	1352
MlsI	TGGCCA	3 cut(s)	35, 604, 1132
MluNI	TGGCCA	3 cut(s)	35, 604, 1132
MlyI	GAGTC	4 cut(s)	152, 409, 1016, 1046
MmeI	TCCRAC	3 cut(s)	46, 834, 1763
Mox20I	TGGCCA	3 cut(s)	35, 604, 1132
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	3 cut(s)	35, 604, 1132
MslI	CAYNNNNRTG	4 cut(s)	566, 848, 920, 2312
Msp20I	TGGCCA	3 cut(s)	35, 604, 1132
MspA1I	CMGCKG	1 cut(s)	2584
MspCI	CTTAAG	1 cut(s)	2741
MspR9I	CCNGG	3 cut(s)	32, 2601, 2672
MunI	CAATTG	2 cut(s)	404, 1031
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	3 cut(s)	32, 2601, 2672
MwoI	GCNNNNNNNGC	5 cut(s)	628, 637, 1718, 2192, 2450
NcoI	CCATGG	1 cut(s)	1558
NlaIV	GGNNCC	4 cut(s)	826, 1693, 1722, 2521
NmeAIII	GCCGAG	1 cut(s)	1630
NmuCI	GTSAC	2 cut(s)	226, 2704
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	5 cut(s)	110, 512, 571, 853, 925
PaeI	GCATGC	3 cut(s)	110, 853, 925
PceI	AGGCCT	1 cut(s)	132
PciI	ACATGT	2 cut(s)	508, 567
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	2606
PfoI	TCCNGGA	1 cut(s)	2599
PkrI	GCNGC	4 cut(s)	185, 782, 1001, 2729
PleI	GAGTC	4 cut(s)	151, 408, 1015, 1046
PpsI	GAGTC	4 cut(s)	151, 408, 1015, 1046
PpuMI	RGGWCCY	1 cut(s)	1691
PscI	ACATGT	2 cut(s)	508, 567
PshAI	GACNNNNGTC	1 cut(s)	1696
PshBI	ATTAAT	1 cut(s)	696
PsiI	TTATAA	1 cut(s)	1326
Psp124BI	GAGCTC	1 cut(s)	1352
Psp1406I	AACGTT	1 cut(s)	1144
Psp5II	RGGWCCY	1 cut(s)	1691
Psp6I	CCWGG	3 cut(s)	30, 2599, 2670
PspFI	CCCAGC	1 cut(s)	2695
PspGI	CCWGG	3 cut(s)	30, 2599, 2670
PspN4I	GGNNCC	4 cut(s)	826, 1693, 1722, 2521
PspPI	GGNCC	7 cut(s)	343, 443, 824, 1411, 1691, 2037, 2101
PspPPI	RGGWCCY	1 cut(s)	1691
PsuI	RGATCY	5 cut(s)	871, 943, 1168, 1510, 2796
RsaI	GTAC	4 cut(s)	1200, 1236, 1936, 2819
RsaNI	GTAC	4 cut(s)	1199, 1235, 1935, 2818
RseI	CAYNNNNRTG	4 cut(s)	566, 848, 920, 2312
SacI	GAGCTC	1 cut(s)	1352
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	184, 781, 1000, 2728
Sau96I	GGNCC	7 cut(s)	343, 443, 824, 1411, 1691, 2037, 2101
ScaI	AGTACT	1 cut(s)	1236
SchI	GAGTC	4 cut(s)	152, 409, 1016, 1046
ScrFI	CCNGG	3 cut(s)	32, 2601, 2672
SduI	GDGCHC	1 cut(s)	1352
SfaNI	GCATC	2 cut(s)	418, 1776
SfcI	CTRYAG	1 cut(s)	2196
SinI	GGWCC	6 cut(s)	343, 443, 824, 1691, 2037, 2101
SmiMI	CAYNNNNRTG	4 cut(s)	566, 848, 920, 2312
SmlI	CTYRAG	5 cut(s)	553, 1088, 1102, 2341, 2741
SmoI	CTYRAG	5 cut(s)	553, 1088, 1102, 2341, 2741
SphI	GCATGC	3 cut(s)	110, 853, 925
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	2582, 2727, 2833
SspI	AATATT	4 cut(s)	526, 756, 1809, 2119
SspMI	CTAG	9 cut(s)	860, 869, 932, 941, 1224, 1415, 1655, 2081, 2777
SstI	GAGCTC	1 cut(s)	1352
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	30, 2599, 2670
StyI	CCWWGG	3 cut(s)	1095, 1558, 1957
TaiI	ACGT	1 cut(s)	1147
TaqI	TCGA	5 cut(s)	489, 1248, 1583, 1673, 1749
TaqII	GACCGA	1 cut(s)	1394
TatI	WGTACW	2 cut(s)	1234, 2817
TauI	GCSGC	1 cut(s)	2730
TscAI	CASTG	8 cut(s)	445, 631, 659, 1267, 2647, 2692, 2697, 2713
TseFI	GTSAC	2 cut(s)	226, 2704
TseI	GCWGC	3 cut(s)	183, 780, 999
Tsp45I	GTSAC	2 cut(s)	226, 2704
TspDTI	ATGAA	7 cut(s)	256, 376, 578, 1193, 1197, 2081, 2402
TspRI	CASTG	8 cut(s)	445, 631, 659, 1267, 2647, 2692, 2697, 2713
Van91I	CCANNNNNTGG	1 cut(s)	2606
Vha464I	CTTAAG	1 cut(s)	2741
VpaK11BI	GGWCC	6 cut(s)	343, 443, 824, 1691, 2037, 2101
VspI	ATTAAT	1 cut(s)	696
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	4 cut(s)	2292, 2351, 2436, 2508
XceI	RCATGY	5 cut(s)	110, 512, 571, 853, 925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1945, 2095
XspI	CTAG	9 cut(s)	860, 869, 932, 941, 1224, 1415, 1655, 2081, 2777
ZrmI	AGTACT	1 cut(s)	1236
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.