Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Reverse (-)

19626354 .. 19629019

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGGACTTTGAAGCTCAGAGGCATTGGATGGAGATCACACTCAATCTGCCAATTAAGGATTGGTATCGAAACAGTACGGTCAATCGATCTCAGATACTGGGGTCTTGACTACCCTCCTCTCACTGCCTATCAGAGTTATGTTCATGGCCTTTTCCTTAGATTTTTCAGCCCTGAATCGGTTGCACTTTTCGCTTCCCGTGGCCATGAGTCCTATCTGGGAAAACTTCTCATGAGGTGGACAGTGTTGTCCTCCGATGCCTTGGTGTTCTTTCCTGCTGTTTTATACTTTGTTCTTGTTTACTATGCTGGTCAAAACCCAAGTCGCCGAAGGGGTGACATAGCGTGGCATATCGCGATTATCTTACTTAATCCGTGTCTTATCCTAATTGACCATGGTCATTTCCAGTACAATTGCATCAGCTTGGGTCTGACCGTGGGAGCTATTGCCTCTGTTCTTTCGGACAAAGATCTTGTAGCCTGTGTCCTATACAGTCTTGCTCTCAACCACAAACAGATGAGTGCATATTTTGCCCCTGCATTTTTCAGTCATCTCCTGGGTAAATGCCTAAGGCGTCGATATCCAGTTCTGGAAGTGTTAAAACTTGGCATTGTGGTCTTAGGAACATTTATTGTTGTCTGGTGGCCATATGTTCATTCAACGGAAGACTTCTTGGGGGTTCTCTCTCGTCTTGCTCCTTTTGAAAGAGGGATATTTGAGGATTATGTGGCTAACTTTTGGTGCACCACTTCGGTTCTTGTAAAATGGAAGAGATTATTTCCAACACAGTCCCTGAAGCTTATCAGCTTGGGTGCAACTGTTTCTACTCTCCTACCTTCAATGATTCAGCAGATATGGGCTCCAAGCAAGCCGGGTTTCCTTTACGGGTTGCTGAATAGTGCTTTCTCGTTTTATCTGTTCTCATTCCAAGTGCACGAGAAGTCTATTTTGCTGCCTCTCCTGCCAGCGAGTCTTTTGGCAATGGAAGAACCAACGCTTTATACCTGGATGACACTTTACGCCTTATTCTCGATGTTCCCTCTTCTACACCGTGACAAACTGGTTCTACCGTATCTTGCGCTATCTGCTCTCTTCTTCCTTTTAAACCATGTGCCAAATGGAAGACAGGCTACGAGGGACACAAGTGCCTTGAGATCATCTGTGACAACAGTCTCTGTCTTGTGTTCGGTCGTTCTTCATGTTGTTTACTTAAACATGCATCCCCCCGCCCGATATCCTTTCCTTTTTGAAGCTTTGATAATGCTCGTTTGCTTCACCCATTTCGTGTTTCTTACTTTGTACGCCAATGCAAAACAATGGATGTTGCTTAAAGACTCCAACTTGGTAGATAAAGAAAAGAAGCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

457

Amino Acids

51.96

Weight (kDa)

9.37

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccII	CGCG	1 cut(s)	356
AciI	CCGC	1 cut(s)	1227
AcoI	YGGCCR	2 cut(s)	202, 644
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	574
AfaI	GTAC	3 cut(s)	78, 410, 1301
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	5 cut(s)	13, 660, 704, 840, 1250
AjnI	CCWGG	2 cut(s)	555, 1004
AluBI	AGCT	7 cut(s)	16, 423, 443, 799, 807, 1253, 1363
AluI	AGCT	7 cut(s)	16, 423, 443, 799, 807, 1253, 1363
Alw21I	GWGCWC	2 cut(s)	746, 936
Alw26I	GTCTC	1 cut(s)	1177
Alw44I	GTGCAC	2 cut(s)	742, 932
AlwNI	CAGNNNCTG	3 cut(s)	99, 793, 1175
AoxI	GGCC	3 cut(s)	148, 202, 644
ApaLI	GTGCAC	2 cut(s)	742, 932
ApeKI	GCWGC	1 cut(s)	952
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspLEI	GCGC	1 cut(s)	1081
AsuC2I	CCSGG	1 cut(s)	873
AsuHPI	GGTGA	2 cut(s)	347, 1267
AxyI	CCTNAGG	1 cut(s)	569
BaeGI	GKGCMC	2 cut(s)	746, 936
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BalI	TGGCCA	2 cut(s)	204, 646
BanII	GRGCYC	1 cut(s)	862
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BauI	CACGAG	1 cut(s)	935
BbsI	GAAGAC	2 cut(s)	672, 1129
Bbv12I	GWGCWC	2 cut(s)	746, 936
BbvI	GCAGC	1 cut(s)	939
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	557, 1006
BcnI	CCSGG	1 cut(s)	873
BcoDI	GTCTC	1 cut(s)	1177
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	3 cut(s)	557, 873, 1006
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	3 cut(s)	557, 873, 1006
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	3 cut(s)	247, 426, 1228
BmuI	ACTGGG	1 cut(s)	109
BoxI	GACNNNNGTC	2 cut(s)	396, 1169
BpiI	GAAGAC	2 cut(s)	672, 1129
BpuEI	CTTGAG	1 cut(s)	1171
BpuMI	CCSGG	1 cut(s)	873
Bsa29I	ATCGAT	1 cut(s)	87
BsaBI	GATNNNNATC	2 cut(s)	34, 65
BsaHI	GRCGYC	1 cut(s)	574
BsaJI	CCNNGG	5 cut(s)	199, 261, 394, 435, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	4 cut(s)	104, 406, 584, 1065
Bse21I	CCTNAGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	987
Bse8I	GATNNNNATC	2 cut(s)	34, 65
BseBI	CCWGG	2 cut(s)	557, 1006
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	5 cut(s)	199, 261, 394, 435, 556
BseGI	GGATG	4 cut(s)	35, 1014, 1219, 1326
BseJI	GATNNNNATC	2 cut(s)	34, 65
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	2 cut(s)	31, 106
BseNI	ACTGG	4 cut(s)	104, 406, 584, 1065
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	2 cut(s)	746, 936
BseXI	GCAGC	1 cut(s)	939
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	1191
BshFI	GGCC	3 cut(s)	150, 204, 646
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	1191
BsiHKAI	GWGCWC	2 cut(s)	746, 936
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	3 cut(s)	19, 775, 1151
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	1177
BsmFI	GGGAC	3 cut(s)	19, 775, 1151
BsnI	GGCC	3 cut(s)	150, 204, 646
Bsp1286I	GDGCHC	3 cut(s)	746, 862, 936
Bsp143I	GATC	4 cut(s)	35, 88, 469, 1154
Bsp19I	CCATGG	1 cut(s)	394
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	1 cut(s)	1227
BspANI	GGCC	3 cut(s)	150, 204, 646
BspCNI	CTCAG	2 cut(s)	30, 105
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	104, 406, 584, 1065
BssECI	CCNNGG	5 cut(s)	199, 261, 394, 435, 556
BssMI	GATC	4 cut(s)	35, 88, 469, 1154
BssNI	GRCGYC	1 cut(s)	574
BssSI	CACGAG	1 cut(s)	935
BssT1I	CCWWGG	2 cut(s)	261, 394
Bst2BI	CACGAG	1 cut(s)	935
Bst2UI	CCWGG	2 cut(s)	557, 1006
Bst6I	CTCTTC	3 cut(s)	764, 1047, 1097
BstACI	GRCGYC	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	869, 966
BstDEI	CTNAG	5 cut(s)	17, 92, 158, 569, 619
BstDSI	CCRYGG	3 cut(s)	199, 394, 435
BstF5I	GGATG	4 cut(s)	35, 1014, 1219, 1326
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	1081
BstKTI	GATC	4 cut(s)	38, 91, 472, 1157
BstMAI	GTCTC	1 cut(s)	1177
BstMBI	GATC	4 cut(s)	35, 88, 469, 1154
BstMCI	CGRYCG	1 cut(s)	1191
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 530, 961, 1085
BstNI	CCWGG	2 cut(s)	557, 1006
BstNSI	RCATGY	1 cut(s)	1219
BstPAI	GACNNNNGTC	2 cut(s)	396, 1169
BstSCI	CCNGG	3 cut(s)	555, 871, 1004
BstSLI	GKGCMC	2 cut(s)	746, 936
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	939
BstV2I	GAAGAC	2 cut(s)	672, 1129
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
Bsu15I	ATCGAT	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	150, 204, 646
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	3 cut(s)	199, 394, 435
BtsCI	GGATG	4 cut(s)	35, 1014, 1219, 1326
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 249
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	869, 966
CaiI	CAGNNNCTG	3 cut(s)	99, 793, 1175
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	1081
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	77, 409, 1300
CviAII	CATG	7 cut(s)	146, 206, 232, 395, 1109, 1199, 1216
CviQI	GTAC	3 cut(s)	77, 409, 1300
DdeI	CTNAG	5 cut(s)	17, 92, 158, 569, 619
DpnI	GATC	4 cut(s)	37, 90, 471, 1156
DpnII	GATC	4 cut(s)	35, 88, 469, 1154
DraI	TTTAAA	1 cut(s)	1104
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	202, 644
Eam1104I	CTCTTC	3 cut(s)	764, 1047, 1097
EarI	CTCTTC	3 cut(s)	764, 1047, 1097
Eco130I	CCWWGG	2 cut(s)	261, 394
Eco24I	GRGCYC	1 cut(s)	862
Eco32I	GATATC	2 cut(s)	581, 1235
Eco57I	CTGAAG	1 cut(s)	815
Eco81I	CCTNAGG	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	555, 1004
EcoRV	GATATC	2 cut(s)	581, 1235
EcoT14I	CCWWGG	2 cut(s)	261, 394
EcoT22I	ATGCAT	1 cut(s)	1221
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	2 cut(s)	261, 394
FaeI	CATG	7 cut(s)	149, 209, 235, 398, 1112, 1202, 1219
FaqI	GGGAC	3 cut(s)	19, 775, 1151
FatI	CATG	7 cut(s)	145, 205, 231, 394, 1108, 1198, 1215
FauI	CCCGC	1 cut(s)	1234
FauNDI	CATATG	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	4 cut(s)	42, 1021, 1206, 1333
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	1 cut(s)	953
GlaI	GCGC	1 cut(s)	1080
GluI	GCNGC	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	150, 204, 646
HapII	CCGG	1 cut(s)	872
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	1081
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	7 cut(s)	149, 209, 235, 398, 1112, 1202, 1219
Hin6I	GCGC	1 cut(s)	1079
HinP1I	GCGC	1 cut(s)	1079
HindIII	AAGCTT	2 cut(s)	797, 1251
HinfI	GANTC	5 cut(s)	176, 209, 844, 970, 1334
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	2 cut(s)	347, 1267
Hpy166II	GTNNAC	5 cut(s)	240, 301, 744, 934, 1207
Hpy188I	TCNGA	6 cut(s)	20, 95, 135, 256, 432, 463
Hpy188III	TCNNGA	5 cut(s)	107, 232, 355, 590, 1030
Hpy8I	GTNNAC	5 cut(s)	240, 301, 744, 934, 1207
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	324, 846
HpyCH4V	TGCA	9 cut(s)	185, 417, 524, 539, 744, 815, 934, 1219, 1310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 530, 961, 1085
HpyF3I	CTNAG	5 cut(s)	17, 92, 158, 569, 619
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	7 cut(s)	149, 209, 235, 398, 1112, 1202, 1219
HspAI	GCGC	1 cut(s)	1079
Kzo9I	GATC	4 cut(s)	35, 88, 469, 1154
LmnI	GCTCC	4 cut(s)	440, 700, 865, 1368
Lsp1109I	GCAGC	1 cut(s)	939
LweI	GCATC	3 cut(s)	247, 426, 1228
MaeIII	GTNAC	3 cut(s)	335, 1052, 1162
MalI	GATC	4 cut(s)	37, 90, 471, 1156
MboI	GATC	4 cut(s)	35, 88, 469, 1154
MboII	GAAGA	8 cut(s)	677, 781, 998, 1034, 1084, 1087, 1134, 1187
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	746, 862, 936
MlsI	TGGCCA	2 cut(s)	204, 646
MluCI	AATT	3 cut(s)	53, 387, 412
MluNI	TGGCCA	2 cut(s)	204, 646
MlyI	GAGTC	3 cut(s)	218, 979, 1328
MmeI	TCCRAC	2 cut(s)	806, 1362
Mox20I	TGGCCA	2 cut(s)	204, 646
Mph1103I	ATGCAT	1 cut(s)	1221
MscI	TGGCCA	2 cut(s)	204, 646
MseI	TTAA	6 cut(s)	56, 369, 599, 1103, 1211, 1329
Msp20I	TGGCCA	2 cut(s)	204, 646
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	3 cut(s)	557, 873, 1006
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	557, 1006
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	191, 530, 961, 1085
NciI	CCSGG	1 cut(s)	873
NcoI	CCATGG	1 cut(s)	394
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	4 cut(s)	35, 88, 469, 1154
NlaIII	CATG	7 cut(s)	149, 209, 235, 398, 1112, 1202, 1219
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	3 cut(s)	335, 1052, 1162
NruI	TCGCGA	1 cut(s)	356
NsiI	ATGCAT	1 cut(s)	1221
NspI	RCATGY	1 cut(s)	1219
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	176, 844
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	3 cut(s)	217, 978, 1328
PpsI	GAGTC	3 cut(s)	217, 978, 1328
PshAI	GACNNNNGTC	2 cut(s)	396, 1169
Psp6I	CCWGG	2 cut(s)	555, 1004
PspGI	CCWGG	2 cut(s)	555, 1004
PspN4I	GGNNCC	1 cut(s)	861
PstNI	CAGNNNCTG	3 cut(s)	99, 793, 1175
PsuI	RGATCY	1 cut(s)	469
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	3 cut(s)	78, 410, 1301
RsaNI	GTAC	3 cut(s)	77, 409, 1300
SaqAI	TTAA	6 cut(s)	56, 369, 599, 1103, 1211, 1329
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	4 cut(s)	35, 88, 469, 1154
SchI	GAGTC	3 cut(s)	218, 979, 1328
ScrFI	CCNGG	3 cut(s)	557, 873, 1006
SduI	GDGCHC	3 cut(s)	746, 862, 936
SfaNI	GCATC	3 cut(s)	247, 426, 1228
SmlI	CTYRAG	1 cut(s)	1150
SmoI	CTYRAG	1 cut(s)	1150
Sse9I	AATT	3 cut(s)	53, 387, 412
SsiI	CCGC	1 cut(s)	1227
StyD4I	CCNGG	3 cut(s)	555, 871, 1004
StyI	CCWWGG	2 cut(s)	261, 394
TaqI	TCGA	4 cut(s)	69, 87, 577, 1031
TaqII	GACCGA	1 cut(s)	1177
TasI	AATT	3 cut(s)	53, 387, 412
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	176, 844
Tru1I	TTAA	6 cut(s)	56, 369, 599, 1103, 1211, 1329
Tru9I	TTAA	6 cut(s)	56, 369, 599, 1103, 1211, 1329
TscAI	CASTG	2 cut(s)	130, 249
TseFI	GTSAC	3 cut(s)	335, 1052, 1162
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	3 cut(s)	335, 1052, 1162
TspDTI	ATGAA	3 cut(s)	134, 644, 1187
TspGWI	ACGGA	2 cut(s)	363, 677
TspRI	CASTG	2 cut(s)	130, 249
VneI	GTGCAC	2 cut(s)	742, 932
XceI	RCATGY	1 cut(s)	1219
XcmI	CCANNNNNNNNNTGG	2 cut(s)	59, 1115
Zsp2I	ATGCAT	1 cut(s)	1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.