Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Reverse (-)

37055969 .. 37058732

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGGTGGACGGTGTTGTCATCTGATGCCTTGGTGTTCTTTCCTGCTGTTTTATACTTTGTTCTTGTTTACTATGCTGGTCAAAATCCAAGTCGCCAAAGGAGTGACATAGCGTGGCATATCGCAATTATTTTACTTAATCCTTGTCTCATCCTAATTGATCATGGTCACTTCCAGTATAATTGCATCAGCTTGGGTCTGACTGTGGGAGCTATTGCCTCTGTTCTTTCGGATAAAGATCTTGTAGCCTGTGTCCTATACAGTCTTGCTCTCAACCACAAACAGATGAGTGCGTATTTTGCTCCTGCATTTTTCAGTCATCTCCTGGGTAAATGCCTAAAGCGCCGGTATCCTGTTCTAGAAGTGTTAAAACTTGGCCTTGTGGTCCTGGGAACGTTTGTTGTTGTATGGTGGCCATATGTTCATTCAACGGAAGCCTTTTTTGGGGTTCTCTCTCGTCTTGCTCCTTTTGAGAGAGGGATATTTGAGGATTATGTGGCTAACTTCTGGTGCACCACTTCGGTTCTTGTAAAATGGAAGAGATTATTTCCAACACAGTCCCTGAAGCTCATCAGCTTGGGTGCAACTGTTTCTACTTTCCTGCCTTCAATGATTCAGCAGATATGGGCTCCGAGCAAGCCGGGTTTCCTTTATGGGTTGCTGAATAGTGCTTTCTCGTTTTATCTCTTCTCATTCCAAGTGCACGAGAAGTCTATTTTACTACCTCTCCTGCCAGCAAGTCTTTTGGCAATGGAAGAACCATTTCTTTTTACCTGGATGACACTTTACGCCTTGTTCTCAATGTTCCCTCTTCTACACCGTGACAAACTGGTTCTACCCTATCTTGCACTATCTGCTCTCTTTGTCCTTTTAAACCATGTGCCGAATGGAAGACGGACCACAAGGGACACAAGCGCCTTGAGATCATTTGTGATCGCAGTCTCTGTCTTGTGCTCAGTCGTTCTTCATGTTGTTTATTTAAGCATGCATCCCCCCGCCCGGTATCCTTTCCTTTTTGAAGCTTTGATAATGCTCGTTTGCTTCTCGCAGTTCGTCTTTCTTACTGTTTACACCAATGCAAAACAATGGATGTTGCTTAAACACTCCGACTTGGTGGATAAAGAAAAGAAGCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

380

Amino Acids

43.19

Weight (kDa)

9.3

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AciI	CCGC	1 cut(s)	996
AclI	AACGTT	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	584
AfiI	CCNNNNNNNGG	2 cut(s)	444, 999
AgsI	TTSAA	3 cut(s)	429, 609, 1019
AjnI	CCWGG	3 cut(s)	324, 387, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	6 cut(s)	192, 212, 568, 576, 1022, 1132
AluI	AGCT	6 cut(s)	192, 212, 568, 576, 1022, 1132
Alw21I	GWGCWC	3 cut(s)	515, 705, 956
Alw26I	GTCTC	2 cut(s)	152, 946
Alw44I	GTGCAC	2 cut(s)	511, 701
AlwNI	CAGNNNCTG	2 cut(s)	562, 944
AoxI	GGCC	2 cut(s)	376, 413
ApaLI	GTGCAC	2 cut(s)	511, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	345, 917
AspS9I	GGNCC	2 cut(s)	385, 897
AsuC2I	CCSGG	2 cut(s)	642, 1000
AvaII	GGWCC	2 cut(s)	385, 897
BaeGI	GKGCMC	2 cut(s)	515, 705
BalI	TGGCCA	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	631
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	3 cut(s)	515, 705, 956
BciT130I	CCWGG	3 cut(s)	326, 389, 775
BciVI	GTATCC	2 cut(s)	360, 1014
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	2 cut(s)	642, 1000
BcoDI	GTCTC	2 cut(s)	152, 946
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	2 cut(s)	346, 918
BfuI	GTATCC	2 cut(s)	360, 1014
BglII	AGATCT	1 cut(s)	238
Bme1390I	CCNGG	5 cut(s)	326, 389, 642, 775, 1000
Bme18I	GGWCC	2 cut(s)	385, 897
BmgT120I	GGNCC	2 cut(s)	385, 897
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	5 cut(s)	326, 389, 642, 775, 1000
BmsI	GCATC	3 cut(s)	16, 195, 997
BpiI	GAAGAC	1 cut(s)	898
BpuEI	CTTGAG	1 cut(s)	940
BpuMI	CCSGG	2 cut(s)	642, 1000
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	30, 325, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 999
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	175, 834
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	326, 389, 775
BseDI	CCNNGG	3 cut(s)	30, 325, 388
BseGI	GGATG	4 cut(s)	150, 783, 988, 1095
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	444, 999
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	2 cut(s)	175, 834
BseSI	GKGCMC	2 cut(s)	515, 705
BshFI	GGCC	2 cut(s)	378, 415
BsiHKAI	GWGCWC	3 cut(s)	515, 705, 956
BsiSI	CCGG	3 cut(s)	346, 641, 1000
BslFI	GGGAC	2 cut(s)	544, 920
BslI	CCNNNNNNNGG	2 cut(s)	444, 999
BsmAI	GTCTC	2 cut(s)	152, 946
BsmFI	GGGAC	2 cut(s)	544, 920
BsnI	GGCC	2 cut(s)	378, 415
Bsp1286I	GDGCHC	4 cut(s)	515, 631, 705, 956
Bsp143I	GATC	4 cut(s)	160, 238, 923, 933
BspACI	CCGC	1 cut(s)	996
BspANI	GGCC	2 cut(s)	378, 415
BspCNI	CTCAG	1 cut(s)	968
BspLI	GGNNCC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	175, 834
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	30, 325, 388
BssMI	GATC	4 cut(s)	160, 238, 923, 933
BssSI	CACGAG	1 cut(s)	704
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	3 cut(s)	326, 389, 775
Bst4CI	ACNGT	7 cut(s)	13, 205, 263, 558, 589, 821, 1066
Bst6I	CTCTTC	3 cut(s)	533, 692, 816
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	638, 735, 986
BstDEI	CTNAG	1 cut(s)	955
BstF5I	GGATG	4 cut(s)	150, 783, 988, 1095
BstH2I	RGCGCY	2 cut(s)	346, 918
BstHHI	GCGC	2 cut(s)	345, 917
BstKTI	GATC	4 cut(s)	163, 241, 926, 936
BstMAI	GTCTC	2 cut(s)	152, 946
BstMBI	GATC	4 cut(s)	160, 238, 923, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 342, 854
BstNI	CCWGG	3 cut(s)	326, 389, 775
BstNSI	RCATGY	1 cut(s)	988
BstSCI	CCNGG	5 cut(s)	324, 387, 640, 773, 998
BstSLI	GKGCMC	2 cut(s)	515, 705
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	2 cut(s)	360, 1014
BsuRI	GGCC	2 cut(s)	378, 415
BtsCI	GGATG	4 cut(s)	150, 783, 988, 1095
Cac8I	GCNNGC	3 cut(s)	638, 735, 986
CaiI	CAGNNNCTG	2 cut(s)	562, 944
CfoI	GCGC	2 cut(s)	345, 917
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	385, 897
CviAII	CATG	4 cut(s)	164, 878, 968, 985
DdeI	CTNAG	1 cut(s)	955
DpnI	GATC	4 cut(s)	162, 240, 925, 935
DpnII	GATC	4 cut(s)	160, 238, 923, 933
DraI	TTTAAA	1 cut(s)	873
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	533, 692, 816
EarI	CTCTTC	3 cut(s)	533, 692, 816
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	385, 897
Eco57I	CTGAAG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	324, 387, 773
EcoT14I	CCWWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	990
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	167, 881, 971, 988
FaqI	GGGAC	2 cut(s)	544, 920
FatI	CATG	4 cut(s)	163, 877, 967, 984
FauI	CCCGC	1 cut(s)	1003
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	4 cut(s)	137, 790, 975, 1102
FriOI	GRGCYC	1 cut(s)	631
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	344, 916
HaeII	RGCGCY	2 cut(s)	346, 918
HaeIII	GGCC	2 cut(s)	378, 415
HapII	CCGG	3 cut(s)	346, 641, 1000
HhaI	GCGC	2 cut(s)	345, 917
Hin1II	CATG	4 cut(s)	167, 881, 971, 988
Hin6I	GCGC	2 cut(s)	343, 915
HinP1I	GCGC	2 cut(s)	343, 915
HindIII	AAGCTT	1 cut(s)	1020
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	3 cut(s)	346, 641, 1000
Hpy166II	GTNNAC	5 cut(s)	9, 70, 513, 703, 1069
Hpy188I	TCNGA	5 cut(s)	25, 201, 232, 633, 1108
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	5 cut(s)	9, 70, 513, 703, 1069
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	7 cut(s)	13, 205, 263, 558, 589, 821, 1066
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	8 cut(s)	186, 308, 513, 584, 703, 848, 988, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 342, 854
HpyF3I	CTNAG	1 cut(s)	955
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	167, 881, 971, 988
HspAI	GCGC	2 cut(s)	343, 915
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 238, 923, 933
LmnI	GCTCC	5 cut(s)	209, 307, 469, 634, 1137
LweI	GCATC	3 cut(s)	16, 195, 997
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	3 cut(s)	104, 167, 821
MalI	GATC	4 cut(s)	162, 240, 925, 935
MboI	GATC	4 cut(s)	160, 238, 923, 933
MboII	GAAGA	6 cut(s)	550, 679, 767, 803, 903, 956
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	4 cut(s)	515, 631, 705, 956
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	3 cut(s)	126, 156, 181
MluNI	TGGCCA	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	575, 1131
MnlI	CCTC	5 cut(s)	229, 470, 481, 735, 819
Mox20I	TGGCCA	1 cut(s)	415
Mph1103I	ATGCAT	1 cut(s)	990
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	5 cut(s)	138, 368, 872, 980, 1098
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	3 cut(s)	346, 641, 1000
MspR9I	CCNGG	5 cut(s)	326, 389, 642, 775, 1000
MvaI	CCWGG	3 cut(s)	326, 389, 775
MwoI	GCNNNNNNNGC	3 cut(s)	299, 342, 854
NciI	CCSGG	2 cut(s)	642, 1000
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	4 cut(s)	160, 238, 923, 933
NlaIII	CATG	4 cut(s)	167, 881, 971, 988
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	3 cut(s)	104, 167, 821
NsiI	ATGCAT	1 cut(s)	990
NspI	RCATGY	1 cut(s)	988
PaeI	GCATGC	1 cut(s)	988
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	395
Psp6I	CCWGG	3 cut(s)	324, 387, 773
PspGI	CCWGG	3 cut(s)	324, 387, 773
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	385, 897
PstNI	CAGNNNCTG	2 cut(s)	562, 944
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	138, 368, 872, 980, 1098
Sau3AI	GATC	4 cut(s)	160, 238, 923, 933
Sau96I	GGNCC	2 cut(s)	385, 897
ScrFI	CCNGG	5 cut(s)	326, 389, 642, 775, 1000
SduI	GDGCHC	4 cut(s)	515, 631, 705, 956
SfaNI	GCATC	3 cut(s)	16, 195, 997
SinI	GGWCC	2 cut(s)	385, 897
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
SphI	GCATGC	1 cut(s)	988
Sse9I	AATT	3 cut(s)	126, 156, 181
SsiI	CCGC	1 cut(s)	996
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	5 cut(s)	324, 387, 640, 773, 998
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	7 cut(s)	13, 205, 263, 558, 589, 821, 1066
TaiI	ACGT	1 cut(s)	398
TasI	AATT	3 cut(s)	126, 156, 181
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	5 cut(s)	138, 368, 872, 980, 1098
Tru9I	TTAA	5 cut(s)	138, 368, 872, 980, 1098
TseFI	GTSAC	3 cut(s)	104, 167, 821
Tsp45I	GTSAC	3 cut(s)	104, 167, 821
TspDTI	ATGAA	2 cut(s)	413, 956
TspGWI	ACGGA	2 cut(s)	446, 910
VneI	GTGCAC	2 cut(s)	511, 701
VpaK11BI	GGWCC	2 cut(s)	385, 897
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.