Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Forward (+)

48720305 .. 48728364

Gene Structure 8060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG385600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGGTGGACAGTGTTATCGTCCGATGCCTTGGTGTTCTTTCCTGCTGTTTTTTATTTTATTGTTGTTTACTATAGTGGGCGTAATCAAAGGGGCCGTATGGGTGGCATAGCATGGCACATTGCAATTATTTTACTCAATCCGTGCCTTATCTTAATTGATCATGGTCATTTCCAGTACAATTGTATCAGCTTGGGTCTGACGCTGGGAGCTATTGCTGCTATTCTTTCTGACAAAGATCTTCTAGCCTGTGTCTTATACAGCCTTGCTCTCAACCACAAACAGATGAGTGCATATTTTGCTCCTGCATTTTTCAGCCATCTTCTGGGTAAATGTATAAGGCGCCGGTATCCAATTTTTGAAGTGTTTAAACTTGGCCTTGTGGTCTCAGGAACGTTTCTTGTTGTCTGGTGGCCATATGTTCACTCAGTGAAAGCCTTTTTTGAGGTCCTCTCTCGTCTTGCTCCTTTTGAGAGAGGGATATATGAGGATTATGTGGCTAACTTTTGGTGCACCACTTCGGTTCTTGTAAAATGGAAGAGATTGTTTCCAACACATCAACTGAAGGTTCTCAGCCTTGGAGCAACTATTTCTACTTTTCTGCCTTCAATGATTCAGCAGATATGGGCTCCAAGTAAAAAAGGTTTCCTGTATGGGCTGCTGAATAGTGCTTTATCATTTTATCTGTTCTCATTCCAAGTGCACGAGAAGTCTATTTTGCTGCCTCTCCTACCAGCAAGTCTTTTGGCAAGTGAACAACCTTTTCTATTTACCTGGATGACCCTTTATGCACTATTCTTGATGTTCCCTCTTCTACATCGTGACAAGCTGGTTTTACCATATCTTGCGCTATCTGCTCTTTTTATACTTTTAAGCCTGGCGCCGAATAGAAGACAGGACACAAGGGAGACAAATGCCTTCAGATCAATTGTGACAACATTCTTTCCTTTGTGCTCACTCATTCTTCATGTTGTTTATTTCAGCATGAATGCCCCCCAAAGATATCCCTTCCTATTTGAAGCTTTAATTATGCTTCTTTGCTTTTTCCACTTCACATTCCTAACTATGTATACTAATGCAAAACAATGGATGTTGCTGAAACACTCCAACTTGGTAGATAAAGAAAAGAAGCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

379

Amino Acids

43.79

Weight (kDa)

9.58

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	1 - 356	3.7e-94	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	342, 880
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	1070
AclI	AACGTT	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	584, 904
AcyI	GRCGYC	2 cut(s)	343, 881
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	362, 609, 1019
AjnI	CCWGG	2 cut(s)	773, 876
AluBI	AGCT	5 cut(s)	192, 212, 829, 1022, 1132
AluI	AGCT	5 cut(s)	192, 212, 829, 1022, 1132
Alw21I	GWGCWC	3 cut(s)	515, 705, 956
Alw26I	GTCTC	2 cut(s)	391, 902
Alw44I	GTGCAC	2 cut(s)	511, 701
AoxI	GGCC	3 cut(s)	94, 376, 413
ApaLI	GTGCAC	2 cut(s)	511, 701
ApeKI	GCWGC	4 cut(s)	218, 658, 721, 1132
AspLEI	GCGC	3 cut(s)	345, 850, 883
AspS9I	GGNCC	2 cut(s)	94, 448
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	2 cut(s)	515, 705
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BalI	TGGCCA	1 cut(s)	415
BanI	GGYRCC	2 cut(s)	342, 880
BanII	GRGCYC	1 cut(s)	631
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	3 cut(s)	515, 705, 956
BbvI	GCAGC	4 cut(s)	205, 645, 708, 1119
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	2 cut(s)	775, 878
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	391, 902
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	2 cut(s)	346, 884
BfuI	GTATCC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	219, 659, 722, 1133
BlsI	GCNGC	4 cut(s)	220, 660, 723, 1134
Bme1390I	CCNGG	2 cut(s)	775, 878
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	94, 448
BmiI	GGNNCC	4 cut(s)	95, 344, 630, 882
BmrFI	CCNGG	2 cut(s)	775, 878
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	898
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BsaHI	GRCGYC	2 cut(s)	343, 881
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	30, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	775, 878
BseDI	CCNNGG	2 cut(s)	30, 577
BseGI	GGATG	2 cut(s)	783, 1095
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	402, 441, 586
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	2 cut(s)	515, 705
BseXI	GCAGC	4 cut(s)	205, 645, 708, 1119
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	3 cut(s)	96, 378, 415
BshNI	GGYRCC	2 cut(s)	342, 880
BsiHKAI	GWGCWC	3 cut(s)	515, 705, 956
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	391, 902
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	96, 378, 415
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	4 cut(s)	515, 631, 705, 956
Bsp143I	GATC	3 cut(s)	160, 238, 923
BspANI	GGCC	3 cut(s)	96, 378, 415
BspCNI	CTCAG	3 cut(s)	401, 440, 585
BspLI	GGNNCC	4 cut(s)	95, 344, 630, 882
BspT107I	GGYRCC	2 cut(s)	342, 880
BspTNI	GGTCTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	30, 577
BssMI	GATC	3 cut(s)	160, 238, 923
BssNAI	GTATAC	1 cut(s)	1071
BssNI	GRCGYC	2 cut(s)	343, 881
BssSI	CACGAG	1 cut(s)	704
BssT1I	CCWWGG	2 cut(s)	30, 577
Bst1107I	GTATAC	1 cut(s)	1071
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	2 cut(s)	775, 878
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	533, 816
BstACI	GRCGYC	2 cut(s)	343, 881
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstDEI	CTNAG	3 cut(s)	388, 427, 572
BstF5I	GGATG	2 cut(s)	783, 1095
BstH2I	RGCGCY	2 cut(s)	346, 884
BstHHI	GCGC	3 cut(s)	345, 850, 883
BstKTI	GATC	3 cut(s)	163, 241, 926
BstMAI	GTCTC	2 cut(s)	391, 902
BstMBI	GATC	3 cut(s)	160, 238, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 299, 854
BstNI	CCWGG	2 cut(s)	775, 878
BstSCI	CCNGG	2 cut(s)	773, 876
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	2 cut(s)	515, 705
BstV1I	GCAGC	4 cut(s)	205, 645, 708, 1119
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BstZ17I	GTATAC	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	96, 378, 415
BtsCI	GGATG	2 cut(s)	783, 1095
BtsIMutI	CAGTG	2 cut(s)	18, 435
CfoI	GCGC	3 cut(s)	345, 850, 883
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	94, 448
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	114, 164, 968, 985
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	388, 427, 572
DinI	GGCGCC	2 cut(s)	344, 882
DpnI	GATC	3 cut(s)	162, 240, 925
DpnII	GATC	3 cut(s)	160, 238, 923
DraI	TTTAAA	1 cut(s)	370
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	533, 816
EarI	CTCTTC	2 cut(s)	533, 816
Eco130I	CCWWGG	2 cut(s)	30, 577
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	584, 904
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	773, 876
EcoRV	GATATC	1 cut(s)	1004
EcoT14I	CCWWGG	2 cut(s)	30, 577
EcoT38I	GRGCYC	1 cut(s)	631
EgeI	GGCGCC	2 cut(s)	344, 882
EheI	GGCGCC	2 cut(s)	344, 882
ErhI	CCWWGG	2 cut(s)	30, 577
FaeI	CATG	4 cut(s)	117, 167, 971, 988
FatI	CATG	4 cut(s)	113, 163, 967, 984
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	1070
Fnu4HI	GCNGC	4 cut(s)	219, 659, 722, 1133
FokI	GGATG	2 cut(s)	790, 1102
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	4 cut(s)	219, 659, 722, 1133
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	3 cut(s)	344, 849, 882
GluI	GCNGC	4 cut(s)	219, 659, 722, 1133
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	2 cut(s)	346, 884
HaeIII	GGCC	3 cut(s)	96, 378, 415
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	3 cut(s)	345, 850, 883
Hin1I	GRCGYC	2 cut(s)	343, 881
Hin1II	CATG	4 cut(s)	117, 167, 971, 988
Hin6I	GCGC	3 cut(s)	343, 848, 881
HinP1I	GCGC	3 cut(s)	343, 848, 881
HindIII	AAGCTT	1 cut(s)	1020
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	7 cut(s)	9, 70, 424, 513, 703, 755, 1071
Hpy188I	TCNGA	4 cut(s)	25, 201, 232, 923
Hpy188III	TCNNGA	3 cut(s)	390, 799, 821
Hpy8I	GTNNAC	7 cut(s)	9, 70, 424, 513, 703, 755, 1071
HpyAV	CCTTC	4 cut(s)	559, 615, 928, 1018
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	7 cut(s)	125, 293, 308, 513, 703, 791, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 299, 854
HpyF3I	CTNAG	3 cut(s)	388, 427, 572
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	2 cut(s)	343, 881
Hsp92II	CATG	4 cut(s)	117, 167, 971, 988
HspAI	GCGC	3 cut(s)	343, 848, 881
KasI	GGCGCC	2 cut(s)	342, 880
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	160, 238, 923
LmnI	GCTCC	5 cut(s)	209, 307, 469, 581, 634
Lsp1109I	GCAGC	4 cut(s)	205, 645, 708, 1119
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	821, 931
MalI	GATC	3 cut(s)	162, 240, 925
MboI	GATC	3 cut(s)	160, 238, 923
MboII	GAAGA	6 cut(s)	233, 314, 550, 803, 903, 956
MfeI	CAATTG	2 cut(s)	181, 927
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	4 cut(s)	515, 631, 705, 956
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	6 cut(s)	126, 156, 181, 354, 927, 1026
MluNI	TGGCCA	1 cut(s)	415
Mly113I	GGCGCC	2 cut(s)	343, 881
MmeI	TCCRAC	2 cut(s)	575, 1131
MnlI	CCTC	6 cut(s)	439, 461, 470, 481, 735, 819
Mox20I	TGGCCA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	4 cut(s)	155, 369, 872, 1025
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	775, 878
MssI	GTTTAAAC	1 cut(s)	370
MunI	CAATTG	2 cut(s)	181, 927
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	775, 878
MwoI	GCNNNNNNNGC	3 cut(s)	218, 299, 854
NarI	GGCGCC	2 cut(s)	343, 881
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	160, 238, 923
NlaIII	CATG	4 cut(s)	117, 167, 971, 988
NlaIV	GGNNCC	4 cut(s)	95, 344, 630, 882
NmuCI	GTSAC	2 cut(s)	821, 931
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	220, 660, 723, 1134
PluTI	GGCGCC	2 cut(s)	346, 884
PmeI	GTTTAAAC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	773, 876
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	773, 876
PspN4I	GGNNCC	4 cut(s)	95, 344, 630, 882
PspPI	GGNCC	2 cut(s)	94, 448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	155, 369, 872, 1025
SatI	GCNGC	4 cut(s)	219, 659, 722, 1133
Sau3AI	GATC	3 cut(s)	160, 238, 923
Sau96I	GGNCC	2 cut(s)	94, 448
ScrFI	CCNGG	2 cut(s)	775, 878
SduI	GDGCHC	4 cut(s)	515, 631, 705, 956
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	73
SfoI	GGCGCC	2 cut(s)	344, 882
SinI	GGWCC	1 cut(s)	448
Sse9I	AATT	6 cut(s)	126, 156, 181, 354, 927, 1026
SspDI	GGCGCC	2 cut(s)	342, 880
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	773, 876
StyI	CCWWGG	2 cut(s)	30, 577
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	398
TasI	AATT	6 cut(s)	126, 156, 181, 354, 927, 1026
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	4 cut(s)	155, 369, 872, 1025
Tru9I	TTAA	4 cut(s)	155, 369, 872, 1025
TscAI	CASTG	2 cut(s)	18, 435
TseFI	GTSAC	2 cut(s)	821, 931
TseI	GCWGC	4 cut(s)	218, 658, 721, 1132
Tsp45I	GTSAC	2 cut(s)	821, 931
TspDTI	ATGAA	2 cut(s)	956, 1001
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	18, 435
Van91I	CCANNNNNTGG	1 cut(s)	325
VneI	GTGCAC	2 cut(s)	511, 701
VpaK11BI	GGWCC	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	1070
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.