Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017917.1

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Reverse (-)

478 .. 2838

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgaaatgggtagatggaaaagatgatgaatatggtggcggtgatgatggaggttatggattgatggtggtggtgatgaagatcaaccaggcttccgcttctctcctctcttgttcattctcaaatctcagtttcaatttcgccttccagaggagtcatcttattgggggcttgacaagcctcagcttcagatcgccgttgagcttcagcggaagactcactctcggacaaagtagacaaaaatggcgaagagctcaaaaaagagcaaagaagaagaggaggttgttgattctggcgacgatgcttgtcgctgtctcactccatccttactccggtgctgcaactcctcccaagttcggcgactttgaagcccagcggcattggatggaaatcacccttaatctcccgctcaatgaatggtatcgaaacactacccgcaatgatctcagctactggggtctcgactaccctcctctcactgcttatcagagttatgtccatggtcttttcctcagattcttcagtcctgaatcagttgctcttttcacttcccgcggccatgagtcctatttggggaaacttcttatgaggtggacagtgttatcatccgatgccttgctgttctttcctgctgttttttattttattgctgtttactatagtgggtgtaatcagaggggccgtatgggtggcatagcatggcacattgcaataattttactcaatccgtgcctgatcttaattgatcatggtcatttccagtacaattgtatcagcttgggtctgacgctgggagctattgctgctattctttctgacaaagatcttctagcctgtgtcttatacagccttgctctcaaccacaaacaggtatcgtttgattcagtttgggccacatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

300

Amino Acids

33.75

Weight (kDa)

9.41

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	555
AciI	CCGC	8 cut(s)	39, 96, 210, 376, 407, 436, 553, 555
AcoI	YGGCCR	1 cut(s)	556
AcuI	CTGAAG	3 cut(s)	172, 190, 505
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	5 cut(s)	150, 332, 356, 573, 868
AgsI	TTSAA	2 cut(s)	136, 368
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	6 cut(s)	186, 204, 254, 450, 777, 797
AluI	AGCT	6 cut(s)	186, 204, 254, 450, 777, 797
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	319, 464
AlwNI	CAGNNNCTG	1 cut(s)	453
AoxI	GGCC	3 cut(s)	556, 679, 891
ApeKI	GCWGC	2 cut(s)	338, 803
AspS9I	GGNCC	2 cut(s)	679, 891
AsuHPI	GGTGA	3 cut(s)	53, 85, 385
BaeI	ACNNNNGTAYC	2 cut(s)	754, 787
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	325, 790
BccI	CCATC	5 cut(s)	8, 41, 58, 330, 379
BceAI	ACGGC	2 cut(s)	181, 666
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	319, 464
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	1 cut(s)	658
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	4 cut(s)	339, 377, 556, 804
BlsI	GCNGC	4 cut(s)	340, 378, 557, 805
Bme1390I	CCNGG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	679, 891
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	1 cut(s)	89
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	291, 601
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	182
BsaBI	GATNNNNATC	2 cut(s)	80, 389
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	499, 553
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 332, 356, 573, 868
Bse1I	ACTGG	2 cut(s)	458, 760
Bse3DI	GCAATG	2 cut(s)	445, 705
Bse8I	GATNNNNATC	2 cut(s)	80, 389
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	499, 553
BseGI	GGATG	4 cut(s)	322, 390, 605, 896
BseJI	GATNNNNATC	2 cut(s)	80, 389
BseLI	CCNNNNNNNGG	5 cut(s)	150, 332, 356, 573, 868
BseMI	GCAATG	2 cut(s)	445, 705
BseMII	CTCAG	4 cut(s)	142, 196, 460, 526
BseNI	ACTGG	2 cut(s)	458, 760
BseRI	GAGGAG	5 cut(s)	95, 166, 292, 336, 462
BseXI	GCAGC	2 cut(s)	325, 790
BseYI	CCCAGC	2 cut(s)	372, 790
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	3 cut(s)	558, 681, 893
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	150, 332, 356, 573, 868
BsmAI	GTCTC	2 cut(s)	319, 464
BsnI	GGCC	3 cut(s)	558, 681, 893
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	8 cut(s)	39, 96, 210, 376, 407, 436, 553, 555
BspANI	GGCC	3 cut(s)	558, 681, 893
BspCNI	CTCAG	4 cut(s)	141, 195, 459, 525
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	445, 705
BsrI	ACTGG	2 cut(s)	458, 760
BssECI	CCNNGG	2 cut(s)	499, 553
BssMI	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	2 cut(s)	244, 269
BstDEI	CTNAG	4 cut(s)	128, 182, 446, 512
BstDSI	CCRYGG	2 cut(s)	499, 553
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	322, 390, 605, 896
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	6 cut(s)	84, 194, 445, 738, 748, 826
BstMAI	GTCTC	2 cut(s)	319, 464
BstMBI	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 803
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	658
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	325, 790
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	3 cut(s)	558, 681, 893
BtgI	CCRYGG	2 cut(s)	499, 553
BtsCI	GGATG	4 cut(s)	322, 390, 605, 896
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	477, 603
CaiI	CAGNNNCTG	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	679, 891
Cfr42I	CCGCGG	1 cut(s)	556
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	4 cut(s)	500, 560, 699, 749
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	4 cut(s)	128, 182, 446, 512
DpnI	GATC	6 cut(s)	83, 193, 444, 737, 747, 825
DpnII	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	244, 269
EarI	CTCTTC	2 cut(s)	244, 269
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	3 cut(s)	172, 190, 505
EcoICRI	GAGCTC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	503, 563, 702, 752
FatI	CATG	4 cut(s)	499, 559, 698, 748
FauI	CCCGC	3 cut(s)	414, 443, 560
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	339, 377, 556, 804
FokI	GGATG	4 cut(s)	309, 397, 592, 883
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	339, 377, 556, 804
FspBI	CTAG	1 cut(s)	830
GluI	GCNGC	4 cut(s)	339, 377, 556, 804
GsaI	CCCAGC	2 cut(s)	376, 794
HaeIII	GGCC	3 cut(s)	558, 681, 893
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	796
Hin1II	CATG	4 cut(s)	503, 563, 702, 752
HinfI	GANTC	7 cut(s)	154, 216, 289, 516, 530, 563, 881
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	53, 85, 385
Hpy166II	GTNNAC	3 cut(s)	236, 594, 655
Hpy188I	TCNGA	8 cut(s)	191, 227, 489, 515, 610, 675, 786, 817
Hpy188III	TCNNGA	4 cut(s)	148, 461, 527, 900
Hpy8I	GTNNAC	3 cut(s)	236, 594, 655
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	2 cut(s)	341, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 803
HpyF3I	CTNAG	4 cut(s)	128, 182, 446, 512
Hsp92II	CATG	4 cut(s)	503, 563, 702, 752
Ksp22I	TGATCA	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	2 cut(s)	325, 790
LweI	GCATC	2 cut(s)	291, 601
MaeI	CTAG	1 cut(s)	830
MalI	GATC	6 cut(s)	83, 193, 444, 737, 747, 825
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
MboII	GAAGA	7 cut(s)	91, 225, 261, 283, 286, 511, 818
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	4 cut(s)	136, 714, 741, 766
MlyI	GAGTC	3 cut(s)	163, 210, 572
MseI	TTAA	2 cut(s)	399, 740
MspA1I	CMGCKG	3 cut(s)	210, 376, 555
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	2 cut(s)	177, 803
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
NlaIII	CATG	4 cut(s)	503, 563, 702, 752
NlaIV	GGNNCC	1 cut(s)	680
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	289, 516, 530, 881
PkrI	GCNGC	4 cut(s)	340, 378, 557, 805
PleI	GAGTC	3 cut(s)	162, 210, 571
PpsI	GAGTC	3 cut(s)	162, 210, 571
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	2 cut(s)	372, 790
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	679, 891
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
SacI	GAGCTC	1 cut(s)	256
SacII	CCGCGG	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	399, 740
SatI	GCNGC	4 cut(s)	339, 377, 556, 804
Sau3AI	GATC	6 cut(s)	81, 191, 442, 735, 745, 823
Sau96I	GGNCC	2 cut(s)	679, 891
SchI	GAGTC	3 cut(s)	163, 210, 572
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	2 cut(s)	291, 601
SfcI	CTRYAG	1 cut(s)	658
Sfr303I	CCGCGG	1 cut(s)	556
SgrBI	CCGCGG	1 cut(s)	556
Sse9I	AATT	4 cut(s)	136, 714, 741, 766
SsiI	CCGC	8 cut(s)	39, 96, 210, 376, 407, 436, 553, 555
SspMI	CTAG	1 cut(s)	830
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	2 cut(s)	424, 462
TasI	AATT	4 cut(s)	136, 714, 741, 766
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	2 cut(s)	379, 558
TfiI	GAWTC	4 cut(s)	289, 516, 530, 881
Tru1I	TTAA	2 cut(s)	399, 740
Tru9I	TTAA	2 cut(s)	399, 740
TscAI	CASTG	2 cut(s)	484, 603
TseI	GCWGC	2 cut(s)	338, 803
TspDTI	ATGAA	5 cut(s)	17, 42, 92, 105, 429
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	484, 603
XagI	CCTNNNNNAGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.