Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Forward (+)

49683089 .. 49686673

Gene Structure 3585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG367400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGTGCGTATTTTGCTCCTGCATTTTTCAGCCATCTTCTGGGTAAATGTATAAGGCGCCGGTATCCAATTTTCGAAGTGTTTAAACTTGGCCTGGTGGTCTCAGGAACGTTTCTTGTTGTCTGGTGGCCATATATTCACTCAGTTGAAGCCTTTTTTGAGGTTCTCTCTCGTCTTGCTCCTTTTGAGAGGGGGATATATGAGGATTATGTGGCTAACTTTTGGTGCACCACTTCGGTTCTTGTAAAATGGAAGAGATTGTTTCCAACACATCAACTGAAGGTTCTCAGCCTTGGTGCAACTGTTTCTACTTTTCTGCCTTCAATGATTCAGCAGATATGGGCTCCAAGTAAAAAAGGTTTCCTGTATGGGTTGCTGAATAGTGCTTTCTCATTTTATCTGTTCTCATTCCAAGTGCACGAGAAGTCTATTTTGCTGCCTCTCCTACCAGCAAGTCTTTTGGCAAGTGAAGAACCTTTTCTATTTACCTGGATGACCTTTTATGCCCTATTCTCGATGTTCCCTCTTCTACATCGTGACAAGCTGATTTTACCATATCTTGCGCTATCTGCGCTTTTTATACTATTAAGCCTGGCACCGAATAGAAGACAGGAGACAAGGGAGACAAATGCCTTCAGATCAATTGTGACAACATTCTTTCCTTTTTGCTCGCTCATTCTTCATGTTGTTTATTTAAGCATGAATGCTCCCCAAAGATATCCCTTCCTATTTGAAGCTTTAATTATGCTTCTTTGCTTTTCCCAGTTCACATTCCTAACTATGTATACTAACGCACAACAATGGATGTTGCTGAAACACTCCAACTTGGTAGAAATAGAAAAGAAGCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

284

Amino Acids

33.18

Weight (kDa)

9.43

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	1 - 261	4.6e-62	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	57, 595
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	785
AclI	AACGTT	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	299, 619
AcyI	GRCGYC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	149, 324, 734
AjnI	CCWGG	3 cut(s)	93, 488, 591
AluBI	AGCT	3 cut(s)	544, 737, 847
AluI	AGCT	3 cut(s)	544, 737, 847
Alw21I	GWGCWC	2 cut(s)	230, 420
Alw26I	GTCTC	3 cut(s)	106, 608, 617
Alw44I	GTGCAC	2 cut(s)	226, 416
AoxI	GGCC	2 cut(s)	91, 128
ApaLI	GTGCAC	2 cut(s)	226, 416
ApeKI	GCWGC	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	3 cut(s)	60, 565, 574
AsuII	TTCGAA	1 cut(s)	75
BaeGI	GKGCMC	2 cut(s)	230, 420
BalI	TGGCCA	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	57, 595
BanII	GRGCYC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	2 cut(s)	230, 420
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	95, 490, 593
BciVI	GTATCC	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	106, 608, 617
BfoI	RGCGCY	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	3 cut(s)	95, 490, 593
BmiI	GGNNCC	3 cut(s)	59, 345, 597
BmrFI	CCNGG	3 cut(s)	95, 490, 593
BmrI	ACTGGG	1 cut(s)	757
BmuI	ACTGGG	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu14I	TTCGAA	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	763
BseBI	CCWGG	3 cut(s)	95, 490, 593
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	2 cut(s)	498, 810
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	117, 156, 301
BseNI	ACTGG	1 cut(s)	763
BseSI	GKGCMC	2 cut(s)	230, 420
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	2 cut(s)	93, 130
BshNI	GGYRCC	2 cut(s)	57, 595
BsiHKAI	GWGCWC	2 cut(s)	230, 420
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	106, 608, 617
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	93, 130
Bso31I	GGTCTC	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	230, 346, 420
Bsp143I	GATC	1 cut(s)	638
BspANI	GGCC	2 cut(s)	93, 130
BspCNI	CTCAG	3 cut(s)	116, 155, 300
BspLI	GGNNCC	3 cut(s)	59, 345, 597
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	2 cut(s)	57, 595
BspTNI	GGTCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	763
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	638
BssNAI	GTATAC	1 cut(s)	786
BssNI	GRCGYC	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	3 cut(s)	95, 490, 593
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	248, 531
BstACI	GRCGYC	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	3 cut(s)	103, 142, 287
BstF5I	GGATG	2 cut(s)	498, 810
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	3 cut(s)	60, 565, 574
BstKTI	GATC	1 cut(s)	641
BstMAI	GTCTC	3 cut(s)	106, 608, 617
BstMBI	GATC	1 cut(s)	638
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 569, 571
BstNI	CCWGG	3 cut(s)	95, 490, 593
BstSCI	CCNGG	3 cut(s)	93, 488, 591
BstSLI	GKGCMC	2 cut(s)	230, 420
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	613
BstZ17I	GTATAC	1 cut(s)	786
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	93, 130
BtsCI	GGATG	2 cut(s)	498, 810
Cac8I	GCNNGC	1 cut(s)	671
CfoI	GCGC	3 cut(s)	60, 565, 574
Cfr10I	RCCGGY	1 cut(s)	60
CviAII	CATG	2 cut(s)	683, 700
DdeI	CTNAG	3 cut(s)	103, 142, 287
DinI	GGCGCC	1 cut(s)	59
DpnI	GATC	1 cut(s)	640
DpnII	GATC	1 cut(s)	638
DraI	TTTAAA	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	248, 531
EarI	CTCTTC	2 cut(s)	248, 531
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	299, 619
EcoRII	CCWGG	3 cut(s)	93, 488, 591
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	346
EgeI	GGCGCC	1 cut(s)	59
EheI	GGCGCC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	2 cut(s)	686, 703
FatI	CATG	2 cut(s)	682, 699
FblI	GTMKAC	1 cut(s)	785
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	2 cut(s)	505, 817
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	437
GlaI	GCGC	3 cut(s)	59, 564, 573
GluI	GCNGC	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	93, 130
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	3 cut(s)	60, 565, 574
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	686, 703
Hin6I	GCGC	3 cut(s)	58, 563, 572
HinP1I	GCGC	3 cut(s)	58, 563, 572
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	4 cut(s)	228, 418, 768, 786
Hpy188I	TCNGA	1 cut(s)	638
Hpy188III	TCNNGA	3 cut(s)	105, 514, 536
Hpy8I	GTNNAC	4 cut(s)	228, 418, 768, 786
HpyAV	CCTTC	4 cut(s)	274, 330, 643, 733
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	23, 228, 299, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 569, 571
HpyF3I	CTNAG	3 cut(s)	103, 142, 287
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	686, 703
HspAI	GCGC	3 cut(s)	58, 563, 572
KasI	GGCGCC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	638
LmnI	GCTCC	5 cut(s)	22, 184, 349, 712, 852
Lsp1109I	GCAGC	1 cut(s)	423
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	536, 646
MalI	GATC	1 cut(s)	640
MboI	GATC	1 cut(s)	638
MboII	GAAGA	6 cut(s)	29, 265, 482, 518, 618, 671
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	3 cut(s)	230, 346, 420
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	3 cut(s)	69, 642, 741
MluNI	TGGCCA	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	58
MmeI	TCCRAC	2 cut(s)	290, 846
MnlI	CCTC	5 cut(s)	154, 183, 196, 450, 534
Mox20I	TGGCCA	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	4 cut(s)	84, 587, 695, 740
MslI	CAYNNNNRTG	1 cut(s)	799
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	3 cut(s)	95, 490, 593
MssI	GTTTAAAC	1 cut(s)	85
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	3 cut(s)	95, 490, 593
MwoI	GCNNNNNNNGC	3 cut(s)	14, 569, 571
NarI	GGCGCC	1 cut(s)	58
NdeII	GATC	1 cut(s)	638
NlaIII	CATG	2 cut(s)	686, 703
NlaIV	GGNNCC	3 cut(s)	59, 345, 597
NmuCI	GTSAC	2 cut(s)	536, 646
NspV	TTCGAA	1 cut(s)	75
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	438
PluTI	GGCGCC	1 cut(s)	61
PmeI	GTTTAAAC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	3 cut(s)	93, 488, 591
PspGI	CCWGG	3 cut(s)	93, 488, 591
PspN4I	GGNNCC	3 cut(s)	59, 345, 597
RseI	CAYNNNNRTG	1 cut(s)	799
SaqAI	TTAA	4 cut(s)	84, 587, 695, 740
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	1 cut(s)	638
ScrFI	CCNGG	3 cut(s)	95, 490, 593
SduI	GDGCHC	3 cut(s)	230, 346, 420
SfoI	GGCGCC	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	799
Sse9I	AATT	3 cut(s)	69, 642, 741
SspDI	GGCGCC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	93, 488, 591
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	75, 515
TasI	AATT	3 cut(s)	69, 642, 741
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	4 cut(s)	84, 587, 695, 740
Tru9I	TTAA	4 cut(s)	84, 587, 695, 740
TseFI	GTSAC	2 cut(s)	536, 646
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	2 cut(s)	536, 646
TspDTI	ATGAA	2 cut(s)	671, 716
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	2 cut(s)	226, 416
XmiI	GTMKAC	1 cut(s)	785
XmnI	GAANNNNTTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.