Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006191

Physical Location & Seq

Genomic Coordinates Forward (+)

20026325 .. 20031212

Gene Structure 4888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAAGGATCCATGGGGCTGGCCTAAACACGGAGGACTCGGCCATCGACGACGACTGTAGCTGGAAATTGCAGGACCTCGATCGGGTTTGGGTCAATGGGGCCCAGGTGAAGAAGAACAATACTAGAACCATCAACCCAGACCCGTCGAAGAATGATGGACTAGACCTGGACGACATCTTCGACCCAGAACACCAACGTCCAGACAATGGACTTCGACCCAGATCTGCTTCTTGCTTTGCTGCGTTCAGATCCTGTCAGATCAACCGCGAAGGAACTCACTACTCTGAATCAGATTCCGGCGACCAACCTGCAAGACCGAATTTGAATCAGGGTCATAAACAATGGCTTGCAAAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGCGATCCAACGGCTATTGGTATGTGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGCTAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCACTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATTGACAGTAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTTGAAACAGGCCATCTTTCCATCCATAGTGACATATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACTGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGATAGTAAAAAGTTCAGCATGATAATAGATCCGCTTCTGCGAGACCAGTATTCTATTAACGCAGCTCGTAAAATTGCCAAGTTGGCAGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

328

Amino Acids

37.02

Weight (kDa)

6.83

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	112 - 275	6.1e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	112 - 281	1.2e-23	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38460 AT5G38460
fragaria_vesca	FvH4_5g30090
malus_domestica	MD15G1418600.v1.1
prunus_persica	Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1 Prupe.1G562700_v2.0.a1
pyrus_communis	pycom08g19630 pycom15g37160
rosa_chinensis	RchiOBHm_Chr7g0224281
rosa_laevigata	RLG00000001906
rosa_multiflora	Rmu_sc0017917.1_g000001 Rmu_sc0031737.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234880
rosa_rugosa	Rorug07G0222200 Rorug07G0222300 Rorug07G0222400
rosa_samantha	Rh7AG367300 Rh7AG381200 Rh7BG358200 Rh7CG385600 Rh7CG400600 Rh7DG361200 Rh7DG367400
rosa_wichuraiana	Rw7G031090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	268, 851, 923
AclWI	GGATC	7 cut(s)	4, 17, 246, 430, 530, 802, 914
AcoI	YGGCCR	2 cut(s)	42, 842
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	2 cut(s)	691, 884
AfiI	CCNNNNNNNGG	4 cut(s)	31, 85, 209, 391
AgsI	TTSAA	6 cut(s)	328, 362, 496, 508, 604, 749
AhdI	GACNNNNNGTC	1 cut(s)	591
AjnI	CCWGG	2 cut(s)	105, 168
AluBI	AGCT	6 cut(s)	63, 400, 477, 560, 862, 956
AluI	AGCT	6 cut(s)	63, 400, 477, 560, 862, 956
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	927
AlwI	GGATC	7 cut(s)	4, 17, 246, 430, 530, 802, 914
AlwNI	CAGNNNCTG	1 cut(s)	255
AoxI	GGCC	6 cut(s)	22, 42, 102, 674, 754, 842
ApaI	GGGCCC	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	242, 551, 731, 953
ApoI	RAATTY	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	4 cut(s)	76, 102, 103, 674
AsuHPI	GGTGA	3 cut(s)	121, 374, 695
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	844
BamHI	GGATCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	106
BauI	CACGAG	2 cut(s)	526, 579
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	229, 538, 718, 965
BccI	CCATC	6 cut(s)	53, 140, 152, 416, 765, 773
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	107, 170
BcoDI	GTCTC	1 cut(s)	927
BfaI	CTAG	5 cut(s)	126, 164, 404, 561, 666
BfmI	CTRYAG	3 cut(s)	58, 417, 888
BfuAI	ACCTGC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	974
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	4 cut(s)	243, 552, 732, 954
BlsI	GCNGC	4 cut(s)	244, 553, 733, 955
Bme1390I	CCNGG	2 cut(s)	107, 170
Bme18I	GGWCC	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmgT120I	GGNCC	4 cut(s)	76, 102, 103, 674
BmiI	GGNNCC	3 cut(s)	11, 103, 104
BmrFI	CCNGG	2 cut(s)	107, 170
BmrI	ACTGGG	1 cut(s)	825
BmuI	ACTGGG	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	3 cut(s)	13, 105, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 85, 209, 391
Bse1I	ACTGG	4 cut(s)	592, 820, 845, 937
BseBI	CCWGG	2 cut(s)	107, 170
BseDI	CCNNGG	3 cut(s)	13, 105, 518
BseGI	GGATG	2 cut(s)	631, 765
BseLI	CCNNNNNNNGG	4 cut(s)	31, 85, 209, 391
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	4 cut(s)	592, 820, 845, 937
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	229, 538, 718, 965
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	6 cut(s)	24, 44, 104, 676, 756, 844
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	598, 730
BslI	CCNNNNNNNGG	4 cut(s)	31, 85, 209, 391
BsmAI	GTCTC	1 cut(s)	927
BsmFI	GGGAC	2 cut(s)	598, 730
BsnI	GGCC	6 cut(s)	24, 44, 104, 676, 756, 844
Bso31I	GGTCTC	1 cut(s)	927
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	106, 621
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	3 cut(s)	268, 851, 923
BspANI	GGCC	6 cut(s)	24, 44, 104, 676, 756, 844
BspCNI	CTCAG	1 cut(s)	662
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	11, 103, 104
BspMAI	CTGCAG	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	7 cut(s)	4, 17, 246, 430, 530, 802, 914
BspTNI	GGTCTC	1 cut(s)	927
BsrI	ACTGG	4 cut(s)	592, 820, 845, 937
BssECI	CCNNGG	3 cut(s)	13, 105, 518
BssSI	CACGAG	2 cut(s)	526, 579
BssT1I	CCWWGG	2 cut(s)	13, 518
Bst2BI	CACGAG	2 cut(s)	526, 579
Bst2UI	CCWGG	2 cut(s)	107, 170
Bst4CI	ACNGT	4 cut(s)	59, 689, 706, 882
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	22, 351, 663
BstDEI	CTNAG	3 cut(s)	478, 649, 829
BstDSI	CCRYGG	1 cut(s)	13
BstEII	GGTNACC	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	631, 765
BstFNI	CGCG	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	927
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 974
BstNI	CCWGG	2 cut(s)	107, 170
BstPI	GGTNACC	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	105, 168
BstSFI	CTRYAG	3 cut(s)	58, 417, 888
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	229, 538, 718, 965
BstX2I	RGATCY	5 cut(s)	9, 224, 251, 807, 919
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	5 cut(s)	9, 224, 251, 807, 919
BsuRI	GGCC	6 cut(s)	24, 44, 104, 676, 756, 844
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	631, 765
BtsIMutI	CAGTG	2 cut(s)	813, 838
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	22, 351, 663
CaiI	CAGNNNCTG	1 cut(s)	255
Cfr13I	GGNCC	4 cut(s)	76, 102, 103, 674
Csp6I	GTAC	2 cut(s)	690, 883
CviAII	CATG	3 cut(s)	14, 695, 910
CviQI	GTAC	2 cut(s)	690, 883
DdeI	CTNAG	3 cut(s)	478, 649, 829
DriI	GACNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	42, 842
Eam1104I	CTCTTC	1 cut(s)	519
Eam1105I	GACNNNNNGTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	13, 518
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	683
EcoO109I	RGGNCCY	2 cut(s)	76, 102
EcoO65I	GGTNACC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	105, 168
EcoT14I	CCWWGG	2 cut(s)	13, 518
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	13, 518
FaeI	CATG	3 cut(s)	17, 698, 913
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	598, 730
FatI	CATG	3 cut(s)	13, 694, 909
FauNDI	CATATG	1 cut(s)	779
Fnu4HI	GCNGC	4 cut(s)	243, 552, 732, 954
FokI	GGATG	2 cut(s)	638, 752
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	4 cut(s)	243, 552, 732, 954
FspBI	CTAG	5 cut(s)	126, 164, 404, 561, 666
GluI	GCNGC	4 cut(s)	243, 552, 732, 954
HaeIII	GGCC	6 cut(s)	24, 44, 104, 676, 756, 844
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	3 cut(s)	17, 698, 913
HindIII	AAGCTT	2 cut(s)	398, 860
HinfI	GANTC	4 cut(s)	38, 290, 296, 328
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	3 cut(s)	121, 374, 695
Hpy188I	TCNGA	5 cut(s)	251, 261, 289, 295, 652
Hpy188III	TCNNGA	3 cut(s)	203, 526, 596
Hpy99I	CGWCG	3 cut(s)	53, 56, 151
HpyAV	CCTTC	2 cut(s)	266, 665
HpyCH4III	ACNGT	4 cut(s)	59, 689, 706, 882
HpyCH4IV	ACGT	2 cut(s)	199, 615
HpyCH4V	TGCA	4 cut(s)	73, 314, 353, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 974
HpyF3I	CTNAG	3 cut(s)	478, 649, 829
HpySE526I	ACGT	2 cut(s)	199, 615
Hsp92II	CATG	3 cut(s)	17, 698, 913
LmnI	GCTCC	2 cut(s)	474, 853
Lsp1109I	GCAGC	4 cut(s)	229, 538, 718, 965
MaeI	CTAG	5 cut(s)	126, 164, 404, 561, 666
MaeII	ACGT	2 cut(s)	199, 615
MaeIII	GTNAC	3 cut(s)	531, 683, 773
MboII	GAAGA	6 cut(s)	124, 127, 163, 172, 494, 506
MflI	RGATCY	5 cut(s)	9, 224, 251, 807, 919
MhlI	GDGCHC	2 cut(s)	106, 621
MlsI	TGGCCA	1 cut(s)	844
MluCI	AATT	4 cut(s)	68, 322, 362, 963
MluNI	TGGCCA	1 cut(s)	844
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	463, 636
MnlI	CCTC	9 cut(s)	28, 89, 522, 522, 575, 619, 622, 813, 821
Mox20I	TGGCCA	1 cut(s)	844
MscI	TGGCCA	1 cut(s)	844
MseI	TTAA	2 cut(s)	636, 948
Msp20I	TGGCCA	1 cut(s)	844
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	107, 170
MvaI	CCWGG	2 cut(s)	107, 170
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	557, 974
NcoI	CCATGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	779
NlaIII	CATG	3 cut(s)	17, 698, 913
NlaIV	GGNNCC	3 cut(s)	11, 103, 104
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	2 cut(s)	683, 773
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	290, 296, 328
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	244, 553, 733, 955
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	105, 168
PspEI	GGTNACC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	105, 168
PspN4I	GGNNCC	3 cut(s)	11, 103, 104
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	4 cut(s)	76, 102, 103, 674
PspPPI	RGGWCCY	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	255
PsuI	RGATCY	5 cut(s)	9, 224, 251, 807, 919
PvuI	CGATCG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	691, 884
RsaNI	GTAC	2 cut(s)	690, 883
SaqAI	TTAA	2 cut(s)	636, 948
SatI	GCNGC	4 cut(s)	243, 552, 732, 954
Sau96I	GGNCC	4 cut(s)	76, 102, 103, 674
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	107, 170
SduI	GDGCHC	2 cut(s)	106, 621
SfcI	CTRYAG	3 cut(s)	58, 417, 888
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	4 cut(s)	68, 322, 362, 963
SsiI	CCGC	3 cut(s)	268, 851, 923
SspMI	CTAG	5 cut(s)	126, 164, 404, 561, 666
StyD4I	CCNGG	2 cut(s)	105, 168
StyI	CCWWGG	2 cut(s)	13, 518
TaaI	ACNGT	4 cut(s)	59, 689, 706, 882
TaiI	ACGT	2 cut(s)	202, 618
TaqI	TCGA	5 cut(s)	48, 81, 149, 183, 217
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	4 cut(s)	68, 322, 362, 963
TfiI	GAWTC	3 cut(s)	290, 296, 328
Tru1I	TTAA	2 cut(s)	636, 948
Tru9I	TTAA	2 cut(s)	636, 948
TscAI	CASTG	2 cut(s)	820, 845
TseFI	GTSAC	2 cut(s)	683, 773
TseI	GCWGC	4 cut(s)	242, 551, 731, 953
Tsp45I	GTSAC	2 cut(s)	683, 773
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	820, 845
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XspI	CTAG	5 cut(s)	126, 164, 404, 561, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.