Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012626

Physical Location & Seq

Genomic Coordinates Forward (+)

22191603 .. 22192741

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31284.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGATGAAGAAGAAAACCAAAATTCAGCAGGCATCCAAAAATGACAGTGATGTCATTCTCCGACTCCCAAACCACATCATCGTGGAAATCTTCTGCAAAATCCCCACCAAAAAGCTTCTCCAGTTCAAATCTGTCTGTAAGTCTTGGCTCTCTTTGTTCTCGGATTGTGAATTCACCCAAGACTTGTTTTCTTGTACTCCTCCTTGCTTTATGATGCATAGCAACACCCCGAGTGGTATGTTCATAGTTGATCATGAAAAGGCCTCCACCCCCGACGGCGTCTCACTTAGGGTGCCTCACCCTGCTAATGCTGACCCATCATGGATGCGTGACATCGTAGGTTCATGCAATGGCCTCCTCTGCATACGCCATACTCTCTACAAGCGTACAACTACGCGTAACTTTTACGCTTTTTACCTCTTGCAACCCATAACTGAATCTGATGAATCCAATAAGTTAATGGTTTTGACTGTTGGCTCCAAGAGTTGGAGAAGCATTGGGAGTTGTAAGGATCCTGGTTGGAGGCCACAAGAGATGGTTTATTTGAATGGTTCTCTTCATTGGCATCTTCATCCGTGTTGTTTGATTGGTGCATTCAACATTGAAAGTGAGCAGGTCCAAGAATTTCAGCTGGATTCTGCTTTGAGAGAATATATTTGGCTGGGAGTTTTGGGAGGCTGTCTCTCCCTAACTGATTATGACAATGGTGGTGCCCTAACTGATTATAACAATGGTGGTGATGTGATTGTTTGGCTGATGAAGGAATATGGTGTTGCAAAGTCTTGGACCAAAGCGTTTGACATTCAAAACTCTTTTGGACTACCGTTAAAATTTACAAAAGCAGGAGAATTAATTATGACATCTTATGCTCGAGGTAATTTTGCTTTGATGACCTTTACTCCCGGAACAAGTACACTTGAGAAGATTGAGGAAGTTGGTATGCCACGGGACAATGTTTCTATCAGTCTCTTTGTTCCAAACTTGGTTTCACTTAAGGATATCCTCTTGCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

340

Amino Acids

38.19

Weight (kDa)

7.53

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 60	9.2e-09	F-box domain
F-box-like	PF12937	20 - 58	2.3e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012626)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31284 FvH4_5g31801 FvH4_7g31600 FvH4_7g31610 FvH4_7g33811 FvH4_7g33811 FvH4_7g33811 FvH4_7g33811
rosa_chinensis	RchiOBHm_Chr4g0438521
rosa_laevigata	RLG00000006355
rosa_multiflora	Rmu_sc0002327.1_g000008 Rmu_sc0002327.1_g000009
rosa_rugosa	Rorug04G0331500
rosa_samantha	Rh4AG383000 Rh4BG372800 Rh4BG397000 Rh4CG386700 Rh4CG412000 Rh4DG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AasI	GACNNNNNNGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	607
AccB1I	GGYRCC	2 cut(s)	295, 713
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccII	CGCG	1 cut(s)	400
AclWI	GGATC	2 cut(s)	509, 522
AcsI	RAATTY	4 cut(s)	24, 173, 626, 833
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	3 cut(s)	199, 391, 916
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflII	CTTAAG	1 cut(s)	995
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	130, 550, 601, 608, 809
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	973, 1005
AluBI	AGCT	2 cut(s)	118, 634
AluI	AGCT	2 cut(s)	118, 634
Alw26I	GTCTC	3 cut(s)	289, 689, 974
AlwI	GGATC	2 cut(s)	509, 522
Ama87I	CYCGRG	2 cut(s)	232, 873
AoxI	GGCC	3 cut(s)	264, 355, 527
ApoI	RAATTY	4 cut(s)	24, 173, 626, 833
AseI	ATTAAT	1 cut(s)	854
AspS9I	GGNCC	2 cut(s)	619, 789
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	3 cut(s)	169, 293, 752
AvaI	CYCGRG	2 cut(s)	232, 873
AvaII	GGWCC	2 cut(s)	619, 789
BaeGI	GKGCMC	1 cut(s)	718
BamHI	GGATCC	1 cut(s)	514
BanI	GGYRCC	2 cut(s)	295, 713
BccI	CCATC	2 cut(s)	328, 532
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	3 cut(s)	289, 689, 974
BfrI	CTTAAG	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	519, 906
Bme18I	GGWCC	2 cut(s)	619, 789
BmeT110I	CYCGRG	2 cut(s)	232, 873
BmgT120I	GGNCC	2 cut(s)	619, 789
BmiI	GGNNCC	4 cut(s)	297, 481, 516, 715
BmrFI	CCNGG	2 cut(s)	519, 906
BmsI	GCATC	4 cut(s)	44, 207, 318, 577
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	1 cut(s)	906
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	947
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	947
BseGI	GGATG	3 cut(s)	35, 333, 574
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	192, 350
BseSI	GKGCMC	1 cut(s)	718
BseYI	CCCAGC	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	3 cut(s)	266, 357, 529
BshNI	GGYRCC	2 cut(s)	295, 713
BsiHKCI	CYCGRG	2 cut(s)	232, 873
BsiSI	CCGG	1 cut(s)	906
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	3 cut(s)	289, 689, 974
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	965
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	3 cut(s)	266, 357, 529
BsoBI	CYCGRG	2 cut(s)	232, 873
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	2 cut(s)	253, 514
BspANI	GGCC	3 cut(s)	266, 357, 529
BspFNI	CGCG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	297, 481, 516, 715
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	2 cut(s)	509, 522
BspT107I	GGYRCC	2 cut(s)	295, 713
BspTI	CTTAAG	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	947
BssMI	GATC	2 cut(s)	253, 514
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	50, 475, 828
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	282
BstAFI	CTTAAG	1 cut(s)	995
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	947
BstF5I	GGATG	3 cut(s)	35, 333, 574
BstFNI	CGCG	1 cut(s)	400
BstKTI	GATC	2 cut(s)	256, 517
BstMAI	GTCTC	3 cut(s)	289, 689, 974
BstMBI	GATC	2 cut(s)	253, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	517, 904
BstSLI	GKGCMC	1 cut(s)	718
BstUI	CGCG	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	3 cut(s)	266, 357, 529
BtgI	CCRYGG	1 cut(s)	947
BtsCI	GGATG	3 cut(s)	35, 333, 574
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	619, 789
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	198, 390, 915
CviAII	CATG	3 cut(s)	257, 324, 348
CviQI	GTAC	3 cut(s)	198, 390, 915
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	2 cut(s)	255, 516
DpnII	GATC	2 cut(s)	253, 514
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	2 cut(s)	619, 789
Eco88I	CYCGRG	2 cut(s)	232, 873
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	1003
EcoT22I	ATGCAT	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	3 cut(s)	260, 327, 351
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	3 cut(s)	256, 323, 347
FbaI	TGATCA	1 cut(s)	253
FokI	GGATG	3 cut(s)	22, 340, 561
GsaI	CCCAGC	1 cut(s)	668
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	266, 357, 529
HapII	CCGG	1 cut(s)	906
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	260, 327, 351
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	4 cut(s)	66, 440, 449, 638
HpaII	CCGG	1 cut(s)	906
HphI	GGTGA	3 cut(s)	169, 293, 752
Hpy166II	GTNNAC	1 cut(s)	917
Hpy188I	TCNGA	3 cut(s)	65, 166, 445
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	917
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	757
HpyCH4III	ACNGT	3 cut(s)	50, 475, 828
HpyCH4V	TGCA	7 cut(s)	99, 220, 351, 366, 427, 596, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	260, 327, 351
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	253, 514
LmnI	GCTCC	1 cut(s)	485
LweI	GCATC	4 cut(s)	44, 207, 318, 577
MaeIII	GTNAC	2 cut(s)	332, 401
MalI	GATC	2 cut(s)	255, 516
MboI	GATC	2 cut(s)	253, 514
MboII	GAAGA	7 cut(s)	16, 22, 25, 85, 551, 563, 937
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	718
MluCI	AATT	8 cut(s)	24, 173, 626, 833, 851, 855, 880, 1015
MluI	ACGCGT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	3 cut(s)	88, 470, 503
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	5 cut(s)	461, 830, 854, 996, 1014
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	634
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	1 cut(s)	906
MspR9I	CCNGG	2 cut(s)	519, 906
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	363
NciI	CCSGG	1 cut(s)	906
NdeII	GATC	2 cut(s)	253, 514
NlaIII	CATG	3 cut(s)	260, 327, 351
NlaIV	GGNNCC	4 cut(s)	297, 481, 516, 715
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	873
PagI	TCATGA	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	266
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	440, 449, 638
PflFI	GACNNNGTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	489
PfoI	TCCNGGA	1 cut(s)	904
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	4 cut(s)	297, 481, 516, 715
PspPI	GGNCC	2 cut(s)	619, 789
PspXI	VCTCGAGB	1 cut(s)	873
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	3 cut(s)	199, 391, 916
RsaNI	GTAC	3 cut(s)	198, 390, 915
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	461, 830, 854, 996, 1014
Sau3AI	GATC	2 cut(s)	253, 514
Sau96I	GGNCC	2 cut(s)	619, 789
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	519, 906
SduI	GDGCHC	1 cut(s)	718
SetI	ASST	7 cut(s)	120, 346, 423, 621, 636, 880, 899
SfaNI	GCATC	4 cut(s)	44, 207, 318, 577
Sfr274I	CTCGAG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	619, 789
SlaI	CTCGAG	1 cut(s)	873
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	873, 920, 995
SmoI	CTYRAG	3 cut(s)	873, 920, 995
Sse9I	AATT	8 cut(s)	24, 173, 626, 833, 851, 855, 880, 1015
SseBI	AGGCCT	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	517, 904
TaaI	ACNGT	3 cut(s)	50, 475, 828
TaqI	TCGA	1 cut(s)	874
TasI	AATT	8 cut(s)	24, 173, 626, 833, 851, 855, 880, 1015
TatI	WGTACW	2 cut(s)	197, 914
TfiI	GAWTC	3 cut(s)	440, 449, 638
Tru1I	TTAA	5 cut(s)	461, 830, 854, 996, 1014
Tru9I	TTAA	5 cut(s)	461, 830, 854, 996, 1014
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	9 cut(s)	17, 23, 235, 273, 336, 462, 551, 563, 776
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	489
Vha464I	CTTAAG	1 cut(s)	995
VpaK11BI	GGWCC	2 cut(s)	619, 789
VspI	ATTAAT	1 cut(s)	854
XapI	RAATTY	4 cut(s)	24, 173, 626, 833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.