Rh4BG397000

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012626
Physical Location & Seq
Reverse (-)
54825075 .. 54826168
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG397000.1

Sequence Viewer

Length: 300 bp
ATGGCCTCCTCTGCATACGCCATTTTCGCTCCAAGGGTAAAACATGGTCTAACTTTTACGCTTTTTTTTATCTTTTGCATCCCATTACTGGTGAGTGGTGAGACCTTAGCTCTTCCAAGACTCAAGAACGTGAAAAAGCATGAAGCGGTACGTGCTTATGGGTTTGGGTTTAGTCCCATCACTCGTGTGTATAAACTACTTGTTATTATGCATTCAGCCGCAGGATCTGATGAATCGAAGGCAATGGTTTTGACTGTTGGCTCGAAGAGTTGGAGAAGCATTGGGAGTTGTAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

99

Amino Acids

10.82

Weight (kDa)

10.02

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 33 - 98 1e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 219
AclWI GGATC 1 cut(s) 232
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 88
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 2 cut(s) 103, 110
BauI CACGAG 1 cut(s) 183
BccI CCATC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmsI GCATC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 2 cut(s) 146, 219
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 224
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 117, 260
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 11, 26, 152
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 44, 140
CviJI RGCY 4 cut(s) 5, 110, 218, 261
CviKI_1 RGCY 4 cut(s) 5, 110, 218, 261
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 117, 260
EarI CTCTTC 2 cut(s) 117, 260
Eco130I CCWWGG 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 2 cut(s) 47, 143
FaiI YATR 6 cut(s) 16, 45, 141, 159, 192, 209
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 43, 139
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 47, 143
HinfI GANTC 2 cut(s) 120, 233
HphI GGTGA 2 cut(s) 103, 110
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 129, 151
HpyCH4V TGCA 3 cut(s) 14, 78, 211
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 26, 152
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 2 cut(s) 129, 151
Hsp92II CATG 2 cut(s) 47, 143
Kzo9I GATC 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 74, 207
LweI GCATC 1 cut(s) 87
MaeII ACGT 2 cut(s) 129, 151
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 104, 277
MflI RGATCY 1 cut(s) 224
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 2 cut(s) 16, 19
Mph1103I ATGCAT 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 211
MwoI GCNNNNNNNGC 3 cut(s) 11, 26, 152
NdeII GATC 1 cut(s) 224
NlaIII CATG 2 cut(s) 47, 143
NsiI ATGCAT 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 224
SchI GAGTC 1 cut(s) 114
SetI ASST 4 cut(s) 107, 112, 132, 154
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 2 cut(s) 146, 219
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 132, 154
TaqI TCGA 2 cut(s) 236, 263
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 156, 246
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.