Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012626

Physical Location & Seq

Genomic Coordinates Forward (+)

22948146 .. 22948766

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAAGGCCTCCACCCCCGACGGCGTCTCACTTAGGGTGCCTCACCCTGCTAATGCTGACCCAGATGCGTGACATCGTAGGTTCATGCAATGGCCTCCTCTGCATACGCCATACTCTCTACAAGCGTACAACTACGCGTAACTTTTACGCTTTTTACCTCTTGCAACCCATAACTGAATCTGATGAATCCAATAAGTTAATGGTTTTGACTGTTCGCTCTAAGAGTTGGAGAAGCATTGGGAGTTGTAAGGATCCTGGTTGGAGGCCACAAGAGATGGTTTATTTGAATGGTTCTCTTCATTGGCATCTTCATCCGAGTTGTTTGATTGGTGCATTCAACATTGAAAGTGAGCAGGTCCAAGAATTTCAGCTGGATTCTGCTTTGAGAGAATCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

134

Amino Acids

15.25

Weight (kDa)

8.68

Isoelectric Point (pI)

72.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012626)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31284 FvH4_5g31801 FvH4_7g31600 FvH4_7g31610 FvH4_7g33811 FvH4_7g33811 FvH4_7g33811 FvH4_7g33811
rosa_chinensis	RchiOBHm_Chr4g0438521
rosa_laevigata	RLG00000006355
rosa_multiflora	Rmu_sc0002327.1_g000008 Rmu_sc0002327.1_g000009
rosa_rugosa	Rorug04G0331500
rosa_samantha	Rh4AG383000 Rh4BG372800 Rh4BG397000 Rh4CG386700 Rh4CG412000 Rh4DG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	39
AccII	CGCG	1 cut(s)	139
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	289, 340, 347
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	248, 261
AoxI	GGCC	3 cut(s)	8, 94, 266
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	39
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	41, 255
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	57, 316
BsaHI	GRCGYC	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	10, 96, 268
BshNI	GGYRCC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	10, 96, 268
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	10, 96, 268
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	41, 255
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	2 cut(s)	248, 261
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	97
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	34, 222
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstUI	CGCG	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	3 cut(s)	10, 96, 268
BtsCI	GGATG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	4 cut(s)	10, 96, 268, 373
CviKI_1	RGCY	4 cut(s)	10, 96, 268, 373
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	34, 222
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	88, 107, 114, 173
FatI	CATG	1 cut(s)	86
FokI	GGATG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	10, 96, 268
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	90
HinfI	GANTC	4 cut(s)	179, 188, 377, 392
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	184, 318
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	90, 105, 166, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	34, 222
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	6 cut(s)	62, 77, 243, 270, 341, 359
LweI	GCATC	2 cut(s)	57, 316
MaeIII	GTNAC	2 cut(s)	71, 140
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	290, 302
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	1 cut(s)	365
MluI	ACGCGT	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	209, 242
MnlI	CCTC	6 cut(s)	21, 53, 107, 110, 170, 258
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	41, 255
NmuCI	GTSAC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	4 cut(s)	179, 188, 377, 392
PflFI	GACNNNGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	41, 255
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	4 cut(s)	85, 162, 360, 375
SfaNI	GCATC	2 cut(s)	57, 316
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	10
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	1 cut(s)	365
TfiI	GAWTC	4 cut(s)	179, 188, 377, 392
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	5 cut(s)	17, 75, 201, 290, 302
Tth111I	GACNNNGTC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.