Rh4AG383000

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012626
Physical Location & Seq
Reverse (-)
68963403 .. 68964715
1313 bp
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UTR
Exon/CDS
Intron
Rh4AG383000.1

Sequence Viewer

Length: 402 bp
ATGCTGATCGATCCGATGCTTCATATCTTCGGTTTATGCAATGGCCTCCTCTGCATACGCCATTTTCGCTCCAAGGGTAAAACATGGTCTAACTTTTACGCTTTTTATCTTTTGCATCCCATTACTGGTGAGACCTTAGCTCTTCCAAGACTCAAGAACGTGAAAAAGCGTGAAGCGGTACGTGCTTATGGGTTTGGGTTTAGTCCCATCACTTGTGTGTATAAACTACTTGTTATTATGCATTCAGCCACAGGATCTGATGAATCGAAGGCAATGGTTTTGACTATTGGCTCGAAGAGTTGGAGAAGCATTGGGAGTAGTAAGGATCTTTGTTGGGATCCTTGTTCGCAGCTACACATGATGATTTATTTGAATGGTTACCTTAATTGGTTTGATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

133

Amino Acids

15.24

Weight (kDa)

9.45

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 8 - 109 5.9e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 5 cut(s) 5, 262, 332, 333, 345
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 2 cut(s) 140, 352
AluI AGCT 2 cut(s) 140, 352
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 5 cut(s) 5, 262, 332, 333, 345
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 2 cut(s) 6, 124
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 2 cut(s) 46, 279
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 2 cut(s) 46, 279
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 9
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 6 cut(s) 6, 10, 254, 325, 337, 394
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 45
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 5 cut(s) 5, 262, 332, 333, 345
BspQI GCTCTTC 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 46, 279
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 6 cut(s) 6, 10, 254, 325, 337, 394
BssT1I CCWWGG 1 cut(s) 72
Bst6I CTCTTC 2 cut(s) 147, 290
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 6 cut(s) 9, 13, 257, 328, 340, 397
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 6 cut(s) 6, 10, 254, 325, 337, 394
BstMWI GCNNNNNNNGC 3 cut(s) 51, 66, 182
BstPI GGTNACC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 3 cut(s) 254, 325, 337
BstYI RGATCY 3 cut(s) 254, 325, 337
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 45
BsuTUI ATCGAT 1 cut(s) 9
BtsCI GGATG 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 84, 358
CviJI RGCY 5 cut(s) 45, 140, 248, 291, 352
CviKI_1 RGCY 5 cut(s) 45, 140, 248, 291, 352
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 136
DpnI GATC 6 cut(s) 8, 12, 256, 327, 339, 396
DpnII GATC 6 cut(s) 6, 10, 254, 325, 337, 394
Eam1104I CTCTTC 2 cut(s) 147, 290
EarI CTCTTC 2 cut(s) 147, 290
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 377
EcoO65I GGTNACC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 87, 361
FaiI YATR 8 cut(s) 24, 37, 56, 85, 189, 222, 239, 359
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 83, 357
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 350
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 2 cut(s) 87, 361
HinfI GANTC 2 cut(s) 150, 263
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 15, 259
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 159, 181
HpyCH4V TGCA 4 cut(s) 39, 54, 115, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 66, 182
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 2 cut(s) 159, 181
Hsp92II CATG 2 cut(s) 87, 361
Kzo9I GATC 6 cut(s) 6, 10, 254, 325, 337, 394
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 111, 237
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 2 cut(s) 6, 124
MaeII ACGT 2 cut(s) 159, 181
MaeIII GTNAC 1 cut(s) 377
MalI GATC 6 cut(s) 8, 12, 256, 327, 339, 396
MboI GATC 6 cut(s) 6, 10, 254, 325, 337, 394
MboII GAAGA 3 cut(s) 19, 134, 307
MflI RGATCY 3 cut(s) 254, 325, 337
MluCI AATT 1 cut(s) 385
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 2 cut(s) 56, 59
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 51, 66, 182
NdeII GATC 6 cut(s) 6, 10, 254, 325, 337, 394
NlaIII CATG 2 cut(s) 87, 361
NlaIV GGNNCC 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 3 cut(s) 254, 325, 337
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 6 cut(s) 6, 10, 254, 325, 337, 394
SchI GAGTC 1 cut(s) 144
SetI ASST 6 cut(s) 137, 142, 162, 184, 354, 384
SfaNI GCATC 2 cut(s) 6, 124
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 385
SsiI CCGC 1 cut(s) 176
StyI CCWWGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 162, 184
TaqI TCGA 3 cut(s) 9, 266, 293
TasI AATT 1 cut(s) 385
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 11, 276
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.