FvH4_7g33811

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012626
Physical Location & Seq
Reverse (-)
23974311 .. 23977836
3526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33811.t1

Sequence Viewer

Length: 1152 bp
ATGAACAAGACGAAGAAAACCAAAACTGAGCCAGCCAAGAGTTATAGTCATGATATCATTCTCAGTCTCCCAAATTACATACTCGTGGACATCTTTTCCAAAATCCCCACCAGAAAACTCCTCCAGTTCAAAACTGTGTCCAAGTCTTGGCTCTCCTTACTCTCCGATCCACAGTTCACCAAAGACTTATTTGCTCAAACTCCTTCTTGCTTTATGATGTATAGTCAGTGTCAACTCATCCCGAATGGCACGTTTATAGTTGATCCTGAAAAGGCGTCGAGCCCGGACGGCGTCTCACTCAGGGTGCCTAACTCTGCTAATGATGATCCATATTGGATGCGTCATATGGTGGGTTCATGCAATGGCATCCTCTGCATACGCTATATTGGAGTTGAGAATAAAAAACGGTCTAACTTCAACACTTTTTACCTTTTGCATCCCATTACCGGTGAGACTGTAGTTCTTCCAAGACTCAAGAATGCTGGAAACCCTCACTGGTGTCACAGATATTGTGTTTATGGGTTTGGGTTTAGTCCCATCACCCACAAGTATAAGCTTCTAGTTATTATTCATCCAGCTCCAAGCTCTTGTGAATGGAAGGCAATGGTGCTGACAGTGGGCTCAAAGAGTTGGAGAAGCATTGGGAGTTATAAGAATCCTGGTAGCCTGAAACAAGAGATGGTTTATTTGAACGGTTTCCTCCATTGCTTTGATCGTAACCGTTATTCCATTCATGCATTCGATATTGAAAGTGAGCGGTTTCAAGAGTTTCAGGTTCCTAGACATCGCCCCTTTGACTCTCATGGACTGGGAGTGTTGGGAGGCTGTCTCTCCCTAGCTGAATTTACTTGGAAAGATCCTGATGTTTCTTGTGTTTGGGTGATGAAGGATTATGGTATTGAAGAGTCTTGGACTAAAGAGTTTGAAATGAGTAGGTGTGGACTACGACCGTTGAAATTTACAGAAGGAAAATTATTTGTGGCAGGTTTTGATCCAGCTTGTGGAAGTAGTTTGATGGCTCATACGCCTGGAACAAGGAGCCTTCAGAAGATCGAGGTTGTTGGTATGCCGCCGCGAAGTTGTGTTTATAGGCTCTTTGTTCCAAACTTGGTTCCGCTAAAGGATATCCTCCAGGGCTTAGCAAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

384

Amino Acids

43.46

Weight (kDa)

9.11

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 64 3.1e-07 F-box-like
F-box PF00646 20 - 61 1.4e-06 F-box domain
FBA_3 PF08268 98 - 307 2.6e-17 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 104 - 260 3e-09 KIB1-4 beta-propeller
FBA_1 PF07734 111 - 311 6.1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 974
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 2 cut(s) 147, 1001
AccBSI CCGCTC 1 cut(s) 757
AccII CGCG 1 cut(s) 1075
AciI CCGC 4 cut(s) 757, 1070, 1073, 1115
AclWI GGATC 5 cut(s) 161, 257, 320, 851, 986
AcsI RAATTY 2 cut(s) 842, 956
AcuI CTGAAG 1 cut(s) 1028
AcyI GRCGYC 2 cut(s) 275, 291
AfiI CCNNNNNNNGG 3 cut(s) 147, 446, 1001
AgeI ACCGGT 1 cut(s) 446
AgsI TTSAA 8 cut(s) 130, 418, 691, 749, 764, 902, 926, 955
AjnI CCWGG 3 cut(s) 658, 1027, 1131
AluBI AGCT 6 cut(s) 556, 578, 585, 839, 998, 1146
AluI AGCT 6 cut(s) 556, 578, 585, 839, 998, 1146
Alw26I GTCTC 4 cut(s) 71, 298, 446, 833
AlwI GGATC 5 cut(s) 161, 257, 320, 851, 986
ApoI RAATTY 2 cut(s) 842, 956
AsiGI ACCGGT 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 695
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 169, 461, 532, 892
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 2 cut(s) 284, 623
BauI CACGAG 1 cut(s) 83
BccI CCATC 3 cut(s) 545, 673, 1009
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 660, 1029, 1133
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 4 cut(s) 71, 298, 446, 833
BfaI CTAG 3 cut(s) 560, 780, 836
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 974
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 1070, 1073
BlpI GCTNAGC 1 cut(s) 1138
BlsI GCNGC 2 cut(s) 1071, 1074
Bme1390I CCNGG 4 cut(s) 284, 660, 1029, 1133
BmiI GGNNCC 4 cut(s) 306, 777, 1040, 1113
BmrFI CCNGG 4 cut(s) 284, 660, 1029, 1133
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 3 cut(s) 327, 375, 445
BmuI ACTGGG 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 2 cut(s) 107, 1115
Bpu1102I GCTNAGC 1 cut(s) 1138
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 284
BsaHI GRCGYC 2 cut(s) 275, 291
BsaJI CCNNGG 1 cut(s) 1132
BsaWI WCCGGW 1 cut(s) 446
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 446, 1001
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 124, 500, 813
Bse3DI GCAATG 3 cut(s) 367, 609, 703
BseBI CCWGG 3 cut(s) 660, 1029, 1133
BseDI CCNNGG 1 cut(s) 1132
BseGI GGATG 5 cut(s) 237, 342, 366, 436, 571
BseLI CCNNNNNNNGG 3 cut(s) 147, 446, 1001
BseMI GCAATG 3 cut(s) 367, 609, 703
BseMII CTCAG 3 cut(s) 18, 76, 313
BseNI ACTGG 3 cut(s) 124, 500, 813
BseRI GAGGAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 950
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 950
BsiSI CCGG 2 cut(s) 284, 447
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 3 cut(s) 147, 446, 1001
BsmAI GTCTC 4 cut(s) 71, 298, 446, 833
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 519
BsmI GAATGC 2 cut(s) 484, 737
Bsp1286I GDGCHC 2 cut(s) 284, 623
Bsp143I GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
Bsp1720I GCTNAGC 1 cut(s) 1138
BspACI CCGC 4 cut(s) 757, 1070, 1073, 1115
BspCNI CTCAG 3 cut(s) 19, 75, 312
BspFNI CGCG 1 cut(s) 1075
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 306, 777, 1040, 1113
BspMI ACCTGC 1 cut(s) 974
BspPI GGATC 5 cut(s) 161, 257, 320, 851, 986
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 757
BsrDI GCAATG 3 cut(s) 367, 609, 703
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 3 cut(s) 124, 500, 813
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 1132
BssMI GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
BssNI GRCGYC 2 cut(s) 275, 291
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 3 cut(s) 660, 1029, 1133
Bst4CI ACNGT 8 cut(s) 136, 174, 408, 457, 616, 695, 722, 951
Bst6I CTCTTC 1 cut(s) 897
BstACI GRCGYC 2 cut(s) 275, 291
BstAPI GCANNNNNTGC 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 33, 1144
BstDEI CTNAG 4 cut(s) 27, 62, 299, 1138
BstF5I GGATG 5 cut(s) 237, 342, 366, 436, 571
BstFNI CGCG 1 cut(s) 1075
BstKTI GATC 7 cut(s) 169, 265, 328, 715, 859, 994, 1053
BstMAI GTCTC 4 cut(s) 71, 298, 446, 833
BstMBI GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
BstMCI CGRYCG 1 cut(s) 950
BstMWI GCNNNNNNNGC 3 cut(s) 288, 372, 1143
BstNI CCWGG 3 cut(s) 660, 1029, 1133
BstSCI CCNGG 4 cut(s) 282, 658, 1027, 1131
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 1075
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
BtgZI GCGATG 1 cut(s) 770
BtsCI GGATG 5 cut(s) 237, 342, 366, 436, 571
BtsIMutI CAGTG 3 cut(s) 233, 493, 621
BveI ACCTGC 1 cut(s) 974
Cac8I GCNNGC 2 cut(s) 33, 1144
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 446
CseI GACGC 3 cut(s) 264, 280, 329
CspAI ACCGGT 1 cut(s) 446
CviAII CATG 4 cut(s) 50, 357, 734, 803
DdeI CTNAG 4 cut(s) 27, 62, 299, 1138
DpnI GATC 7 cut(s) 168, 264, 327, 714, 858, 993, 1052
DpnII GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
Eco24I GRGCYC 2 cut(s) 284, 623
Eco32I GATATC 2 cut(s) 55, 1126
Eco57I CTGAAG 1 cut(s) 1028
EcoRII CCWGG 3 cut(s) 658, 1027, 1131
EcoRV GATATC 2 cut(s) 55, 1126
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 2 cut(s) 284, 623
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 4 cut(s) 53, 360, 737, 806
FaqI GGGAC 1 cut(s) 519
FatI CATG 4 cut(s) 49, 356, 733, 802
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 1070, 1073
FokI GGATG 5 cut(s) 224, 349, 353, 423, 558
FriOI GRGCYC 2 cut(s) 284, 623
Fsp4HI GCNGC 2 cut(s) 1070, 1073
FspBI CTAG 3 cut(s) 560, 780, 836
GluI GCNGC 2 cut(s) 1070, 1073
GsuI CTGGAG 2 cut(s) 107, 1115
HapII CCGG 2 cut(s) 284, 447
HgaI GACGC 3 cut(s) 264, 280, 329
Hin1I GRCGYC 2 cut(s) 275, 291
Hin1II CATG 4 cut(s) 53, 360, 737, 806
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 4 cut(s) 471, 655, 797, 905
HpaII CCGG 2 cut(s) 284, 447
HphI GGTGA 4 cut(s) 169, 461, 532, 892
Hpy166II GTNNAC 4 cut(s) 88, 177, 233, 941
Hpy188I TCNGA 2 cut(s) 166, 1047
Hpy188III TCNNGA 7 cut(s) 50, 241, 266, 475, 764, 860, 1149
Hpy8I GTNNAC 4 cut(s) 88, 177, 233, 941
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 5 cut(s) 213, 592, 880, 959, 1052
HpyCH4III ACNGT 8 cut(s) 136, 174, 408, 457, 616, 695, 722, 951
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 360, 375, 436, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 372, 1143
HpyF3I CTNAG 4 cut(s) 27, 62, 299, 1138
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 2 cut(s) 275, 291
Hsp92II CATG 4 cut(s) 53, 360, 737, 806
Kzo9I GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
LmnI GCTCC 3 cut(s) 583, 1038, 1151
LweI GCATC 3 cut(s) 327, 375, 445
MaeI CTAG 3 cut(s) 560, 780, 836
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 500, 716
MalI GATC 7 cut(s) 168, 264, 327, 714, 858, 993, 1052
MbiI CCGCTC 1 cut(s) 757
MboI GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
MboII GAAGA 4 cut(s) 25, 455, 914, 1060
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 2 cut(s) 284, 623
MluCI AATT 4 cut(s) 73, 842, 956, 971
MlyI GAGTC 3 cut(s) 465, 791, 914
MmeI TCCRAC 1 cut(s) 611
MnlI CCTC 7 cut(s) 131, 380, 501, 710, 815, 1048, 1139
Mph1103I ATGCAT 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 695
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 284, 447
MspR9I CCNGG 4 cut(s) 284, 660, 1029, 1133
Mva1269I GAATGC 2 cut(s) 484, 737
MvaI CCWGG 3 cut(s) 660, 1029, 1133
MvnI CGCG 1 cut(s) 1075
MwoI GCNNNNNNNGC 3 cut(s) 288, 372, 1143
NciI CCSGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 345
NdeII GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
NlaIII CATG 4 cut(s) 53, 360, 737, 806
NlaIV GGNNCC 4 cut(s) 306, 777, 1040, 1113
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 739
PagI TCATGA 1 cut(s) 49
PctI GAATGC 2 cut(s) 484, 737
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 1 cut(s) 655
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 2 cut(s) 147, 1001
PinAI ACCGGT 1 cut(s) 446
PkrI GCNGC 2 cut(s) 1071, 1074
PleI GAGTC 3 cut(s) 465, 791, 913
PpsI GAGTC 3 cut(s) 465, 791, 913
PsiI TTATAA 1 cut(s) 651
Psp6I CCWGG 3 cut(s) 658, 1027, 1131
PspGI CCWGG 3 cut(s) 658, 1027, 1131
PspN4I GGNNCC 4 cut(s) 306, 777, 1040, 1113
PsuI RGATCY 1 cut(s) 856
PsyI GACNNNGTC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 2 cut(s) 1070, 1073
Sau3AI GATC 7 cut(s) 166, 262, 325, 712, 856, 991, 1050
SchI GAGTC 3 cut(s) 465, 791, 914
ScrFI CCNGG 4 cut(s) 284, 660, 1029, 1133
SduI GDGCHC 2 cut(s) 284, 623
SfaNI GCATC 3 cut(s) 327, 375, 445
SfcI CTRYAG 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 4 cut(s) 73, 842, 956, 971
SsiI CCGC 4 cut(s) 757, 1070, 1073, 1115
SspMI CTAG 3 cut(s) 560, 780, 836
StyD4I CCNGG 4 cut(s) 282, 658, 1027, 1131
TaaI ACNGT 8 cut(s) 136, 174, 408, 457, 616, 695, 722, 951
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 278, 741, 1053
TasI AATT 4 cut(s) 73, 842, 956, 971
TauI GCSGC 2 cut(s) 1072, 1075
TfiI GAWTC 1 cut(s) 655
TscAI CASTG 3 cut(s) 233, 500, 621
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 5 cut(s) 17, 345, 560, 722, 899
TspRI CASTG 3 cut(s) 233, 500, 621
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 2 cut(s) 147, 1001
XapI RAATTY 2 cut(s) 842, 956
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 3 cut(s) 560, 780, 836
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.