Domain of unknown function (DUF4149)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22600 AT1G72100 |
| fragaria_vesca | FvH4_5g31970 |
| malus_domestica | MD15G1396400.v1.1 MD15G1407700.v1.1 |
| prunus_persica | Prupe.1G554000_v2.0.a1 |
| pyrus_communis | pycom15g36370 |
| rosa_chinensis | RchiOBHm_Chr7g0227991 |
| rosa_laevigata | RLG00000001601 |
| rosa_multiflora | Rmu_co8508245.1_g000001 Rmu_sc0006493.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00231680 |
| rosa_rugosa | Rorug07G0244900 |
| rosa_samantha | Rh7AG398000 Rh7AG398300 Rh7AG398800 Rh7BG380100 Rh7CG416400 Rh7CG416900 Rh7DG394400 |
| rosa_wichuraiana | Rw7G033150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1475 |
| AccB1I | GGYRCC | 1 cut(s) | 1475 |
| AccBSI | CCGCTC | 1 cut(s) | 1501 |
| AccI | GTMKAC | 2 cut(s) | 1073, 1686 |
| AccII | CGCG | 1 cut(s) | 50 |
| AccIII | TCCGGA | 1 cut(s) | 889 |
| AciI | CCGC | 5 cut(s) | 50, 306, 309, 593, 1501 |
| AclWI | GGATC | 2 cut(s) | 159, 1094 |
| AcoI | YGGCCR | 2 cut(s) | 343, 1260 |
| AcsI | RAATTY | 1 cut(s) | 1627 |
| AcuI | CTGAAG | 2 cut(s) | 1454, 1637 |
| AcyI | GRCGYC | 2 cut(s) | 251, 1335 |
| AdeI | CACNNNGTG | 1 cut(s) | 130 |
| AfaI | GTAC | 4 cut(s) | 550, 858, 1208, 1477 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 329, 1557 |
| AflII | CTTAAG | 1 cut(s) | 844 |
| AflIII | ACRYGT | 2 cut(s) | 895, 1182 |
| AgsI | TTSAA | 4 cut(s) | 880, 1176, 1300, 1384 |
| AhlI | ACTAGT | 1 cut(s) | 40 |
| AjnI | CCWGG | 2 cut(s) | 157, 333 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1406, 1421, 1438, 1453 |
| Alw21I | GWGCWC | 3 cut(s) | 224, 408, 972 |
| Alw26I | GTCTC | 7 cut(s) | 187, 452, 563, 650, 737, 953, 1194 |
| AlwI | GGATC | 2 cut(s) | 159, 1094 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1615 |
| Ama87I | CYCGRG | 1 cut(s) | 1191 |
| Aor13HI | TCCGGA | 1 cut(s) | 889 |
| ApeKI | GCWGC | 7 cut(s) | 485, 506, 941, 974, 1253, 1504, 1716 |
| ApoI | RAATTY | 1 cut(s) | 1627 |
| Asp718I | GGTACC | 1 cut(s) | 1475 |
| AspLEI | GCGC | 2 cut(s) | 50, 1606 |
| AspS9I | GGNCC | 3 cut(s) | 196, 270, 395 |
| AsuHPI | GGTGA | 3 cut(s) | 54, 374, 1429 |
| AsuII | TTCGAA | 1 cut(s) | 356 |
| AvaI | CYCGRG | 1 cut(s) | 1191 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| AxyI | CCTNAGG | 1 cut(s) | 1581 |
| BaeGI | GKGCMC | 1 cut(s) | 126 |
| BalI | TGGCCA | 2 cut(s) | 345, 1262 |
| BanI | GGYRCC | 1 cut(s) | 1475 |
| BanII | GRGCYC | 2 cut(s) | 224, 408 |
| Bbv12I | GWGCWC | 3 cut(s) | 224, 408, 972 |
| BbvI | GCAGC | 7 cut(s) | 472, 518, 953, 961, 1265, 1516, 1703 |
| BccI | CCATC | 5 cut(s) | 1019, 1213, 1270, 1366, 1564 |
| BceAI | ACGGC | 1 cut(s) | 588 |
| BciT130I | CCWGG | 2 cut(s) | 159, 335 |
| BciVI | GTATCC | 3 cut(s) | 670, 703, 1006 |
| BcoDI | GTCTC | 7 cut(s) | 187, 452, 563, 650, 737, 953, 1194 |
| BcuI | ACTAGT | 1 cut(s) | 40 |
| BfaI | CTAG | 2 cut(s) | 41, 447 |
| BfrI | CTTAAG | 1 cut(s) | 844 |
| BfuI | GTATCC | 3 cut(s) | 670, 703, 1006 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 503 |
| BlpI | GCTNAGC | 3 cut(s) | 223, 1497, 1695 |
| Bme1390I | CCNGG | 2 cut(s) | 159, 335 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 1191 |
| BmgT120I | GGNCC | 3 cut(s) | 196, 270, 395 |
| BmiI | GGNNCC | 2 cut(s) | 1401, 1477 |
| BmrFI | CCNGG | 2 cut(s) | 159, 335 |
| BmrI | ACTGGG | 2 cut(s) | 60, 1002 |
| BmsI | GCATC | 6 cut(s) | 406, 592, 679, 712, 1615, 1687 |
| BmuI | ACTGGG | 2 cut(s) | 60, 1002 |
| Bpu10I | CCTNAGC | 3 cut(s) | 630, 651, 954 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 223, 1497, 1695 |
| Bpu14I | TTCGAA | 1 cut(s) | 356 |
| BsaAI | YACGTR | 1 cut(s) | 1183 |
| BsaHI | GRCGYC | 2 cut(s) | 251, 1335 |
| BsaI | GGTCTC | 2 cut(s) | 187, 452 |
| BsaWI | WCCGGW | 1 cut(s) | 889 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 90, 120, 579, 609, 1021, 1051, 1519, 1549 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 329, 1557 |
| Bse1I | ACTGG | 3 cut(s) | 66, 997, 1210 |
| Bse21I | CCTNAGG | 1 cut(s) | 1581 |
| Bse3DI | GCAATG | 2 cut(s) | 810, 1263 |
| BseAI | TCCGGA | 1 cut(s) | 889 |
| BseBI | CCWGG | 2 cut(s) | 159, 335 |
| BseGI | GGATG | 3 cut(s) | 727, 1224, 1281 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 329, 1557 |
| BseMI | GCAATG | 2 cut(s) | 810, 1263 |
| BseMII | CTCAG | 8 cut(s) | 237, 590, 612, 644, 1109, 1488, 1554, 1595 |
| BseNI | ACTGG | 3 cut(s) | 66, 997, 1210 |
| BseSI | GKGCMC | 1 cut(s) | 126 |
| BseXI | GCAGC | 7 cut(s) | 472, 518, 953, 961, 1265, 1516, 1703 |
| BsgI | GTGCAG | 3 cut(s) | 471, 537, 1244 |
| Bsh1236I | CGCG | 1 cut(s) | 50 |
| BshNI | GGYRCC | 1 cut(s) | 1475 |
| BsiHKAI | GWGCWC | 3 cut(s) | 224, 408, 972 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1191 |
| BsiSI | CCGG | 2 cut(s) | 194, 890 |
| BslFI | GGGAC | 3 cut(s) | 351, 1302, 1532 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 329, 1557 |
| BsmAI | GTCTC | 7 cut(s) | 187, 452, 563, 650, 737, 953, 1194 |
| BsmBI | CGTCTC | 2 cut(s) | 563, 737 |
| BsmFI | GGGAC | 3 cut(s) | 351, 1302, 1532 |
| BsmI | GAATGC | 1 cut(s) | 13 |
| Bso31I | GGTCTC | 2 cut(s) | 187, 452 |
| BsoBI | CYCGRG | 1 cut(s) | 1191 |
| Bsp119I | TTCGAA | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 4 cut(s) | 126, 224, 408, 972 |
| Bsp13I | TCCGGA | 1 cut(s) | 889 |
| Bsp1407I | TGTACA | 1 cut(s) | 856 |
| Bsp143I | GATC | 3 cut(s) | 73, 151, 1099 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 223, 1497, 1695 |
| Bsp19I | CCATGG | 1 cut(s) | 285 |
| BspACI | CCGC | 5 cut(s) | 50, 306, 309, 593, 1501 |
| BspCNI | CTCAG | 8 cut(s) | 236, 589, 613, 643, 1110, 1489, 1553, 1594 |
| BspEI | TCCGGA | 1 cut(s) | 889 |
| BspFNI | CGCG | 1 cut(s) | 50 |
| BspLI | GGNNCC | 2 cut(s) | 1401, 1477 |
| BspPI | GGATC | 2 cut(s) | 159, 1094 |
| BspQI | GCTCTTC | 1 cut(s) | 694 |
| BspT104I | TTCGAA | 1 cut(s) | 356 |
| BspT107I | GGYRCC | 1 cut(s) | 1475 |
| BspTI | CTTAAG | 1 cut(s) | 844 |
| BspTNI | GGTCTC | 2 cut(s) | 187, 452 |
| BsrBI | CCGCTC | 1 cut(s) | 1501 |
| BsrDI | GCAATG | 2 cut(s) | 810, 1263 |
| BsrGI | TGTACA | 1 cut(s) | 856 |
| BsrI | ACTGG | 3 cut(s) | 66, 997, 1210 |
| BssMI | GATC | 3 cut(s) | 73, 151, 1099 |
| BssNI | GRCGYC | 2 cut(s) | 251, 1335 |
| BssT1I | CCWWGG | 8 cut(s) | 177, 258, 273, 285, 346, 672, 705, 1413 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 335 |
| Bst4CI | ACNGT | 7 cut(s) | 392, 682, 715, 748, 931, 964, 1270 |
| Bst6I | CTCTTC | 3 cut(s) | 694, 1450, 1456 |
| BstACI | GRCGYC | 2 cut(s) | 251, 1335 |
| BstAFI | CTTAAG | 1 cut(s) | 844 |
| BstAUI | TGTACA | 1 cut(s) | 856 |
| BstBAI | YACGTR | 1 cut(s) | 1183 |
| BstBI | TTCGAA | 1 cut(s) | 356 |
| BstC8I | GCNNGC | 3 cut(s) | 434, 648, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstEII | GGTNACC | 2 cut(s) | 60, 380 |
| BstF5I | GGATG | 3 cut(s) | 727, 1224, 1281 |
| BstFNI | CGCG | 1 cut(s) | 50 |
| BstHHI | GCGC | 2 cut(s) | 50, 1606 |
| BstKTI | GATC | 3 cut(s) | 76, 154, 1102 |
| BstMAI | GTCTC | 7 cut(s) | 187, 452, 563, 650, 737, 953, 1194 |
| BstMBI | GATC | 3 cut(s) | 73, 151, 1099 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 494, 503, 668, 821, 917, 950, 1259, 1612, 1621 |
| BstNI | CCWGG | 2 cut(s) | 159, 335 |
| BstNSI | RCATGY | 2 cut(s) | 899, 1472 |
| BstPI | GGTNACC | 2 cut(s) | 60, 380 |
| BstSCI | CCNGG | 2 cut(s) | 157, 333 |
| BstSLI | GKGCMC | 1 cut(s) | 126 |
| BstUI | CGCG | 1 cut(s) | 50 |
| BstV1I | GCAGC | 7 cut(s) | 472, 518, 953, 961, 1265, 1516, 1703 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 341, 392 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1581 |
| BsuI | GTATCC | 3 cut(s) | 670, 703, 1006 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtgZI | GCGATG | 1 cut(s) | 429 |
| BtsCI | GGATG | 3 cut(s) | 727, 1224, 1281 |
| BtsI | GCAGTG | 2 cut(s) | 1137, 1512 |
| BtsIMutI | CAGTG | 3 cut(s) | 397, 1137, 1512 |
| Cac8I | GCNNGC | 3 cut(s) | 434, 648, 972 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1615 |
| CfoI | GCGC | 2 cut(s) | 50, 1606 |
| Cfr13I | GGNCC | 3 cut(s) | 196, 270, 395 |
| CseI | GACGC | 3 cut(s) | 259, 858, 1343 |
| Csp6I | GTAC | 4 cut(s) | 549, 857, 1207, 1476 |
| CviAII | CATG | 8 cut(s) | 200, 286, 341, 491, 557, 764, 896, 1469 |
| CviQI | GTAC | 4 cut(s) | 549, 857, 1207, 1476 |
| DpnI | GATC | 3 cut(s) | 75, 153, 1101 |
| DpnII | GATC | 3 cut(s) | 73, 151, 1099 |
| DraIII | CACNNNGTG | 1 cut(s) | 130 |
| EaeI | YGGCCR | 2 cut(s) | 343, 1260 |
| Eam1104I | CTCTTC | 3 cut(s) | 694, 1450, 1456 |
| EarI | CTCTTC | 3 cut(s) | 694, 1450, 1456 |
| Ecl136II | GAGCTC | 2 cut(s) | 222, 406 |
| Eco130I | CCWWGG | 8 cut(s) | 177, 258, 273, 285, 346, 672, 705, 1413 |
| Eco147I | AGGCCT | 1 cut(s) | 351 |
| Eco24I | GRGCYC | 2 cut(s) | 224, 408 |
| Eco31I | GGTCTC | 2 cut(s) | 187, 452 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| Eco53kI | GAGCTC | 2 cut(s) | 222, 406 |
| Eco57I | CTGAAG | 2 cut(s) | 1454, 1637 |
| Eco81I | CCTNAGG | 1 cut(s) | 1581 |
| Eco88I | CYCGRG | 1 cut(s) | 1191 |
| Eco91I | GGTNACC | 2 cut(s) | 60, 380 |
| EcoICRI | GAGCTC | 2 cut(s) | 222, 406 |
| EcoO109I | RGGNCCY | 1 cut(s) | 270 |
| EcoO65I | GGTNACC | 2 cut(s) | 60, 380 |
| EcoRI | GAATTC | 1 cut(s) | 1627 |
| EcoRII | CCWGG | 2 cut(s) | 157, 333 |
| EcoT14I | CCWWGG | 8 cut(s) | 177, 258, 273, 285, 346, 672, 705, 1413 |
| EcoT22I | ATGCAT | 2 cut(s) | 607, 694 |
| EcoT38I | GRGCYC | 2 cut(s) | 224, 408 |
| ErhI | CCWWGG | 8 cut(s) | 177, 258, 273, 285, 346, 672, 705, 1413 |
| Esp3I | CGTCTC | 2 cut(s) | 563, 737 |
| FaeI | CATG | 8 cut(s) | 203, 289, 344, 494, 560, 767, 899, 1472 |
| FaqI | GGGAC | 3 cut(s) | 351, 1302, 1532 |
| FatI | CATG | 8 cut(s) | 199, 285, 340, 490, 556, 763, 895, 1468 |
| FauI | CCCGC | 1 cut(s) | 43 |
| FauNDI | CATATG | 2 cut(s) | 410, 694 |
| FblI | GTMKAC | 2 cut(s) | 1073, 1686 |
| FokI | GGATG | 3 cut(s) | 734, 1231, 1288 |
| FriOI | GRGCYC | 2 cut(s) | 224, 408 |
| FspBI | CTAG | 2 cut(s) | 41, 447 |
| GlaI | GCGC | 2 cut(s) | 49, 1605 |
| HapII | CCGG | 2 cut(s) | 194, 890 |
| HgaI | GACGC | 3 cut(s) | 259, 858, 1343 |
| HhaI | GCGC | 2 cut(s) | 50, 1606 |
| Hin1I | GRCGYC | 2 cut(s) | 251, 1335 |
| Hin1II | CATG | 8 cut(s) | 203, 289, 344, 494, 560, 767, 899, 1472 |
| Hin6I | GCGC | 2 cut(s) | 48, 1604 |
| HinP1I | GCGC | 2 cut(s) | 48, 1604 |
| HincII | GTYRAC | 3 cut(s) | 1317, 1333, 1588 |
| HindII | GTYRAC | 3 cut(s) | 1317, 1333, 1588 |
| HinfI | GANTC | 4 cut(s) | 54, 788, 1036, 1300 |
| HpaII | CCGG | 2 cut(s) | 194, 890 |
| HphI | GGTGA | 3 cut(s) | 54, 374, 1429 |
| Hpy166II | GTNNAC | 5 cut(s) | 1074, 1317, 1333, 1588, 1687 |
| Hpy188I | TCNGA | 6 cut(s) | 579, 622, 754, 1308, 1543, 1611 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 632, 890, 1426 |
| Hpy8I | GTNNAC | 5 cut(s) | 1074, 1317, 1333, 1588, 1687 |
| Hpy99I | CGWCG | 2 cut(s) | 253, 614 |
| HpyAV | CCTTC | 5 cut(s) | 472, 574, 1445, 1547, 1551 |
| HpyCH4III | ACNGT | 7 cut(s) | 392, 682, 715, 748, 931, 964, 1270 |
| HpyCH4IV | ACGT | 4 cut(s) | 243, 612, 1182, 1650 |
| HpyCH4V | TGCA | 9 cut(s) | 432, 488, 554, 605, 662, 692, 1225, 1253, 1705 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 494, 503, 668, 821, 917, 950, 1259, 1612, 1621 |
| HpySE526I | ACGT | 4 cut(s) | 243, 612, 1182, 1650 |
| Hsp92I | GRCGYC | 2 cut(s) | 251, 1335 |
| Hsp92II | CATG | 8 cut(s) | 203, 289, 344, 494, 560, 767, 899, 1472 |
| HspAI | GCGC | 2 cut(s) | 48, 1604 |
| Kpn2I | TCCGGA | 1 cut(s) | 889 |
| KpnI | GGTACC | 1 cut(s) | 1479 |
| Kzo9I | GATC | 3 cut(s) | 73, 151, 1099 |
| LguI | GCTCTTC | 1 cut(s) | 694 |
| LmnI | GCTCC | 5 cut(s) | 219, 892, 967, 1399, 1561 |
| Lsp1109I | GCAGC | 7 cut(s) | 472, 518, 953, 961, 1265, 1516, 1703 |
| LweI | GCATC | 6 cut(s) | 406, 592, 679, 712, 1615, 1687 |
| MaeI | CTAG | 2 cut(s) | 41, 447 |
| MaeII | ACGT | 4 cut(s) | 243, 612, 1182, 1650 |
| MaeIII | GTNAC | 3 cut(s) | 60, 380, 1656 |
| MalI | GATC | 3 cut(s) | 75, 153, 1101 |
| MbiI | CCGCTC | 1 cut(s) | 1501 |
| MboI | GATC | 3 cut(s) | 73, 151, 1099 |
| MboII | GAAGA | 9 cut(s) | 100, 311, 311, 611, 711, 1460, 1467, 1473, 1630 |
| MfeI | CAATTG | 1 cut(s) | 1700 |
| MhlI | GDGCHC | 4 cut(s) | 126, 224, 408, 972 |
| MlsI | TGGCCA | 2 cut(s) | 345, 1262 |
| MluCI | AATT | 4 cut(s) | 441, 875, 1627, 1700 |
| MluNI | TGGCCA | 2 cut(s) | 345, 1262 |
| MlyI | GAGTC | 2 cut(s) | 797, 1045 |
| MmeI | TCCRAC | 4 cut(s) | 619, 664, 751, 1419 |
| Mox20I | TGGCCA | 2 cut(s) | 345, 1262 |
| Mph1103I | ATGCAT | 2 cut(s) | 607, 694 |
| MroI | TCCGGA | 1 cut(s) | 889 |
| MscI | TGGCCA | 2 cut(s) | 345, 1262 |
| MseI | TTAA | 4 cut(s) | 845, 1047, 1067, 1596 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| Msp20I | TGGCCA | 2 cut(s) | 345, 1262 |
| MspA1I | CMGCKG | 1 cut(s) | 944 |
| MspCI | CTTAAG | 1 cut(s) | 844 |
| MspI | CCGG | 2 cut(s) | 194, 890 |
| MspR9I | CCNGG | 2 cut(s) | 159, 335 |
| MunI | CAATTG | 1 cut(s) | 1700 |
| Mva1269I | GAATGC | 1 cut(s) | 13 |
| MvaI | CCWGG | 2 cut(s) | 159, 335 |
| MvnI | CGCG | 1 cut(s) | 50 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 494, 503, 668, 821, 917, 950, 1259, 1612, 1621 |
| NcoI | CCATGG | 1 cut(s) | 285 |
| NdeI | CATATG | 2 cut(s) | 410, 694 |
| NdeII | GATC | 3 cut(s) | 73, 151, 1099 |
| NlaIII | CATG | 8 cut(s) | 203, 289, 344, 494, 560, 767, 899, 1472 |
| NlaIV | GGNNCC | 2 cut(s) | 1401, 1477 |
| NmuCI | GTSAC | 3 cut(s) | 60, 380, 1656 |
| NsiI | ATGCAT | 2 cut(s) | 607, 694 |
| NspI | RCATGY | 2 cut(s) | 899, 1472 |
| NspV | TTCGAA | 1 cut(s) | 356 |
| PceI | AGGCCT | 1 cut(s) | 351 |
| PciI | ACATGT | 1 cut(s) | 895 |
| PciSI | GCTCTTC | 1 cut(s) | 694 |
| PctI | GAATGC | 1 cut(s) | 13 |
| PfeI | GAWTC | 2 cut(s) | 54, 1300 |
| PleI | GAGTC | 2 cut(s) | 796, 1044 |
| PpsI | GAGTC | 2 cut(s) | 796, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 1183 |
| PscI | ACATGT | 1 cut(s) | 895 |
| Psp124BI | GAGCTC | 2 cut(s) | 224, 408 |
| Psp6I | CCWGG | 2 cut(s) | 157, 333 |
| PspEI | GGTNACC | 2 cut(s) | 60, 380 |
| PspGI | CCWGG | 2 cut(s) | 157, 333 |
| PspN4I | GGNNCC | 2 cut(s) | 1401, 1477 |
| PspPI | GGNCC | 3 cut(s) | 196, 270, 395 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1615 |
| PvuII | CAGCTG | 1 cut(s) | 944 |
| RsaI | GTAC | 4 cut(s) | 550, 858, 1208, 1477 |
| RsaNI | GTAC | 4 cut(s) | 549, 857, 1207, 1476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SacI | GAGCTC | 2 cut(s) | 224, 408 |
| SapI | GCTCTTC | 1 cut(s) | 694 |
| SaqAI | TTAA | 4 cut(s) | 845, 1047, 1067, 1596 |
| Sau3AI | GATC | 3 cut(s) | 73, 151, 1099 |
| Sau96I | GGNCC | 3 cut(s) | 196, 270, 395 |
| SchI | GAGTC | 2 cut(s) | 797, 1045 |
| ScrFI | CCNGG | 2 cut(s) | 159, 335 |
| SduI | GDGCHC | 4 cut(s) | 126, 224, 408, 972 |
| SfaNI | GCATC | 6 cut(s) | 406, 592, 679, 712, 1615, 1687 |
| SfuI | TTCGAA | 1 cut(s) | 356 |
| SinI | GGWCC | 1 cut(s) | 196 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 844 |
| SmoI | CTYRAG | 1 cut(s) | 844 |
| SpeI | ACTAGT | 1 cut(s) | 40 |
| Sse9I | AATT | 4 cut(s) | 441, 875, 1627, 1700 |
| SseBI | AGGCCT | 1 cut(s) | 351 |
| SsiI | CCGC | 5 cut(s) | 50, 306, 309, 593, 1501 |
| SspMI | CTAG | 2 cut(s) | 41, 447 |
| SstI | GAGCTC | 2 cut(s) | 224, 408 |
| StuI | AGGCCT | 1 cut(s) | 351 |
| StyD4I | CCNGG | 2 cut(s) | 157, 333 |
| StyI | CCWWGG | 8 cut(s) | 177, 258, 273, 285, 346, 672, 705, 1413 |
| TaaI | ACNGT | 7 cut(s) | 392, 682, 715, 748, 931, 964, 1270 |
| TaiI | ACGT | 4 cut(s) | 246, 615, 1185, 1653 |
| TaqI | TCGA | 9 cut(s) | 141, 248, 297, 328, 356, 362, 1039, 1365, 1425 |
| TasI | AATT | 4 cut(s) | 441, 875, 1627, 1700 |
| TatI | WGTACW | 1 cut(s) | 856 |
| TauI | GCSGC | 3 cut(s) | 308, 311, 1504 |
| TfiI | GAWTC | 2 cut(s) | 54, 1300 |
| Tru1I | TTAA | 4 cut(s) | 845, 1047, 1067, 1596 |
| Tru9I | TTAA | 4 cut(s) | 845, 1047, 1067, 1596 |
| TscAI | CASTG | 3 cut(s) | 397, 1144, 1519 |
| TseFI | GTSAC | 3 cut(s) | 60, 380, 1656 |
| TseI | GCWGC | 7 cut(s) | 485, 506, 941, 974, 1253, 1504, 1716 |
| Tsp45I | GTSAC | 3 cut(s) | 60, 380, 1656 |
| TspDTI | ATGAA | 5 cut(s) | 20, 387, 507, 573, 821 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 3 cut(s) | 397, 1144, 1519 |
| Vha464I | CTTAAG | 1 cut(s) | 844 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XapI | RAATTY | 1 cut(s) | 1627 |
| XceI | RCATGY | 2 cut(s) | 899, 1472 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 790, 928 |
| XmiI | GTMKAC | 2 cut(s) | 1073, 1686 |
| XspI | CTAG | 2 cut(s) | 41, 447 |
| Zsp2I | ATGCAT | 2 cut(s) | 607, 694 |