Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

23337866 .. 23339705

Gene Structure 1840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGAGGTCACCTTGCTGTGAGAAAGCCCATACAAACAAAGGGGCATGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTTCCTAAACAAGCTGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATCAACTACCTAAGGCCTGATCTCAAGCGTGGAAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCACAGCTTACTCGGAAACAAATGGTCTTTGATTGCGGGGAGGTTACCTGGACGAACTGATAATGAGATCAAAAACTACTGGAACACCCACATCAAGAGAAAGCTCCTAACTCGCGGCCTTGACCCTCAAACCCACCGCCCCCTCAACGAGGCCGGCGCCGCCGCCACCGCCGCCACGGCAGCTTCTCGGTTGGATTTCAGAAACGGGTCCCCACCGTTTTTGTCAGTCGAGAAAATCAACAGTCTAATGGATCAAACCAACTTCAAGAACAACAACAACAACAACTCGACCAACAACAACAAGAAGATGAATCTCCTGTTCAAACCCAAGAAAGAAGAAGAGTACAGCTACAACAAGAACATGAACAACTTCGAAGAGGCGAATTGCAGCAGCAGTGGCACAACAACAGAGGAAGATCAACAACAGCAACAGAAGCCAGATATCATGTACAAGTGTGGTGACCTAAACTTGGACCTCTCAATAGGGCTGGAGCCGTTTCAATCCGAGCCGACTCGGGCATCGTCGGGAAACTCGGCAGAGTCGAAACTGACTCGGAGGGCTTCTAATAATTACGACATGTTTGCTCAGGCGGCGGCGGTGTGTCTGTGTTGCCAGGTGGGGTTTCAGAGCAGTGAGGCACGCAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCGCAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.61

Weight (kDa)

9.1

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	357
AclWI	GGATC	2 cut(s)	179, 501
AcsI	RAATTY	2 cut(s)	205, 934
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	587, 692
AfiI	CCNNNNNNNGG	2 cut(s)	391, 712
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	4 cut(s)	508, 565, 743, 934
AjnI	CCWGG	2 cut(s)	289, 855
AluBI	AGCT	8 cut(s)	131, 156, 229, 241, 249, 346, 425, 591
AluI	AGCT	8 cut(s)	131, 156, 229, 241, 249, 346, 425, 591
Alw21I	GWGCWC	2 cut(s)	231, 902
Alw44I	GTGCAC	1 cut(s)	898
AlwI	GGATC	2 cut(s)	179, 501
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	3 cut(s)	185, 358, 393
ApaLI	GTGCAC	1 cut(s)	898
ApeKI	GCWGC	4 cut(s)	156, 422, 630, 633
ApoI	RAATTY	2 cut(s)	205, 934
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	2 cut(s)	114, 401
AspS9I	GGNCC	3 cut(s)	51, 450, 715
AsuHPI	GGTGA	3 cut(s)	3, 202, 713
AsuII	TTCGAA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	756
AvaII	GGWCC	3 cut(s)	51, 450, 715
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	69, 228
Bbv12I	GWGCWC	2 cut(s)	231, 902
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	143, 434, 642, 645
BceAI	ACGGC	2 cut(s)	435, 721
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	2 cut(s)	291, 857
BfmI	CTRYAG	2 cut(s)	157, 913
BfoI	RGCGCY	2 cut(s)	115, 402
BglI	GCCNNNNNGGC	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	291, 857
Bme18I	GGWCC	3 cut(s)	51, 450, 715
BmeT110I	CYCGRG	1 cut(s)	756
BmgT120I	GGNCC	3 cut(s)	51, 450, 715
BmiI	GGNNCC	4 cut(s)	400, 451, 452, 735
BmrFI	CCNGG	2 cut(s)	291, 857
BmsI	GCATC	3 cut(s)	99, 134, 770
BpiI	GAAGAC	2 cut(s)	69, 228
BpmI	CTGGAG	1 cut(s)	752
Bpu10I	CCTNAGC	2 cut(s)	164, 828
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	94, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 712
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	291, 857
BseDI	CCNNGG	2 cut(s)	94, 417
BseGI	GGATG	2 cut(s)	84, 90
BseLI	CCNNNNNNNGG	2 cut(s)	391, 712
BseMII	CTCAG	2 cut(s)	155, 842
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	4 cut(s)	143, 434, 642, 645
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	187, 360, 395
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	231, 902
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	391, 712
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	187, 360, 395
BsoBI	CYCGRG	1 cut(s)	756
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	231, 902
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	5 cut(s)	171, 190, 309, 493, 658
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	3 cut(s)	187, 360, 395
BspCNI	CTCAG	2 cut(s)	156, 841
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	4 cut(s)	400, 451, 452, 735
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	179, 501
BspT104I	TTCGAA	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	94, 417
BssMI	GATC	5 cut(s)	171, 190, 309, 493, 658
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 857
Bst4CI	ACNGT	2 cut(s)	459, 485
Bst6I	CTCTTC	2 cut(s)	576, 612
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	690
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	110, 161, 397, 883
BstDEI	CTNAG	4 cut(s)	140, 164, 182, 828
BstDSI	CCRYGG	2 cut(s)	94, 417
BstEII	GGTNACC	3 cut(s)	9, 285, 701
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	84, 90
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	2 cut(s)	115, 402
BstHHI	GCGC	2 cut(s)	114, 401
BstKTI	GATC	5 cut(s)	174, 193, 312, 496, 661
BstMBI	GATC	5 cut(s)	171, 190, 309, 493, 658
BstNI	CCWGG	2 cut(s)	291, 857
BstNSI	RCATGY	1 cut(s)	823
BstPI	GGTNACC	3 cut(s)	9, 285, 701
BstSCI	CCNGG	2 cut(s)	289, 855
BstSFI	CTRYAG	2 cut(s)	157, 913
BstSLI	GKGCMC	1 cut(s)	902
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	143, 434, 642, 645
BstV2I	GAAGAC	2 cut(s)	69, 228
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	187, 360, 395
BtgI	CCRYGG	2 cut(s)	94, 417
BtsCI	GGATG	2 cut(s)	84, 90
BtsI	GCAGTG	2 cut(s)	643, 880
BtsIMutI	CAGTG	3 cut(s)	643, 880, 902
Cac8I	GCNNGC	4 cut(s)	110, 161, 397, 883
CfoI	GCGC	2 cut(s)	114, 401
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	51, 450, 715
Csp6I	GTAC	2 cut(s)	586, 691
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	5 cut(s)	48, 95, 604, 688, 820
CviQI	GTAC	2 cut(s)	586, 691
DdeI	CTNAG	4 cut(s)	140, 164, 182, 828
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	5 cut(s)	173, 192, 311, 495, 660
DpnII	GATC	5 cut(s)	171, 190, 309, 493, 658
Eam1104I	CTCTTC	2 cut(s)	576, 612
EarI	CTCTTC	2 cut(s)	576, 612
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	3 cut(s)	51, 450, 715
Eco53kI	GAGCTC	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	756
Eco91I	GGTNACC	3 cut(s)	9, 285, 701
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	450
EcoO65I	GGTNACC	3 cut(s)	9, 285, 701
EcoRI	GAATTC	1 cut(s)	934
EcoRII	CCWGG	2 cut(s)	289, 855
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	5 cut(s)	51, 98, 607, 691, 823
FaiI	YATR	7 cut(s)	33, 49, 96, 605, 689, 821, 940
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	47, 94, 603, 687, 819
FauI	CCCGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	71, 77
FriOI	GRGCYC	1 cut(s)	231
GlaI	GCGC	2 cut(s)	113, 400
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	752
HaeII	RGCGCY	2 cut(s)	115, 402
HaeIII	GGCC	3 cut(s)	187, 360, 395
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	2 cut(s)	114, 401
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	5 cut(s)	51, 98, 607, 691, 823
Hin6I	GCGC	2 cut(s)	112, 399
HinP1I	GCGC	2 cut(s)	112, 399
HinfI	GANTC	4 cut(s)	553, 754, 782, 793
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	3 cut(s)	3, 202, 713
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	5 cut(s)	257, 443, 748, 798, 870
Hpy188III	TCNNGA	4 cut(s)	337, 472, 508, 768
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	2 cut(s)	95, 128
HpyCH4III	ACNGT	2 cut(s)	459, 485
HpyCH4V	TGCA	3 cut(s)	159, 630, 900
HpyF3I	CTNAG	4 cut(s)	140, 164, 182, 828
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	5 cut(s)	51, 98, 607, 691, 823
HspAI	GCGC	2 cut(s)	112, 399
KasI	GGCGCC	1 cut(s)	398
KflI	GGGWCCC	1 cut(s)	450
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	171, 190, 309, 493, 658
LmnI	GCTCC	4 cut(s)	119, 246, 351, 733
Lsp1109I	GCAGC	4 cut(s)	143, 434, 642, 645
LweI	GCATC	3 cut(s)	99, 134, 770
MaeIII	GTNAC	3 cut(s)	9, 285, 701
MalI	GATC	5 cut(s)	173, 192, 311, 495, 660
MboI	GATC	5 cut(s)	171, 190, 309, 493, 658
MhlI	GDGCHC	2 cut(s)	231, 902
MluCI	AATT	4 cut(s)	205, 625, 811, 934
Mly113I	GGCGCC	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	748, 787, 791
MmeI	TCCRAC	1 cut(s)	414
MroNI	GCCGGC	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	611
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	291, 857
MvaI	CCWGG	2 cut(s)	291, 857
MvnI	CGCG	1 cut(s)	357
NaeI	GCCGGC	1 cut(s)	397
NarI	GGCGCC	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	171, 190, 309, 493, 658
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	5 cut(s)	51, 98, 607, 691, 823
NlaIV	GGNNCC	4 cut(s)	400, 451, 452, 735
NmeAIII	GCCGAG	1 cut(s)	755
NmuCI	GTSAC	2 cut(s)	9, 701
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	187
PciI	ACATGT	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PdiI	GCCGGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	553
PleI	GAGTC	3 cut(s)	748, 787, 790
PluTI	GGCGCC	1 cut(s)	402
PpsI	GAGTC	3 cut(s)	748, 787, 790
PpuMI	RGGWCCY	1 cut(s)	450
PscI	ACATGT	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	289, 855
PspEI	GGTNACC	3 cut(s)	9, 285, 701
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 855
PspN4I	GGNNCC	4 cut(s)	400, 451, 452, 735
PspPI	GGNCC	3 cut(s)	51, 450, 715
PspPPI	RGGWCCY	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	587, 692
RsaNI	GTAC	2 cut(s)	586, 691
SacI	GAGCTC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	171, 190, 309, 493, 658
Sau96I	GGNCC	3 cut(s)	51, 450, 715
SchI	GAGTC	3 cut(s)	748, 787, 791
ScrFI	CCNGG	2 cut(s)	291, 857
SduI	GDGCHC	2 cut(s)	231, 902
SfaNI	GCATC	3 cut(s)	99, 134, 770
SfcI	CTRYAG	2 cut(s)	157, 913
SfoI	GGCGCC	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	3 cut(s)	51, 450, 715
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	205, 625, 811, 934
SseBI	AGGCCT	1 cut(s)	187
SspDI	GGCGCC	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 855
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	459, 485
TaqI	TCGA	5 cut(s)	78, 471, 530, 615, 785
TasI	AATT	4 cut(s)	205, 625, 811, 934
TatI	WGTACW	2 cut(s)	585, 690
TauI	GCSGC	7 cut(s)	150, 360, 404, 407, 416, 836, 839
TfiI	GAWTC	1 cut(s)	553
TscAI	CASTG	3 cut(s)	643, 880, 902
TseFI	GTSAC	2 cut(s)	9, 701
TseI	GCWGC	4 cut(s)	156, 422, 630, 633
Tsp45I	GTSAC	2 cut(s)	9, 701
TspDTI	ATGAA	3 cut(s)	566, 620, 927
TspRI	CASTG	3 cut(s)	643, 880, 902
VneI	GTGCAC	1 cut(s)	898
VpaK11BI	GGWCC	3 cut(s)	51, 450, 715
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 934
XceI	RCATGY	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.