Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

41566898 .. 41568025

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG383900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCTCTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAGAGAAAGCTCCTCACCCGCGGTCTCGACCCTCAAACCCACCGCCCCCTGAACGAGGCCGCCACAGCCACCGCCACCGCCGCGGCAACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCGTTTTTGTCAGTCGAGAAAATTAACAGCCTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGACCAATAACAAGAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAACAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACGACAACCGAGGAAGACCAACAACAACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGTTGGAGCCGTTTCAGTCCGAGCCCACTCGGGCATCCTCCGGGAACTCTGCCGAATCAAAACTGACTCAGCGGACTCCTAATAATCACGATATGTTTGCTCAGGCGGCGGCGGTGTGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGTGAGGCATGTCGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

304

Amino Acids

34.46

Weight (kDa)

8.74

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	9.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.9e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	357, 419
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	205, 907
AfaI	GTAC	2 cut(s)	575, 665
AfiI	CCNNNNNNNGG	3 cut(s)	42, 391, 685
AgsI	TTSAA	4 cut(s)	508, 553, 696, 907
AjnI	CCWGG	2 cut(s)	289, 828
AluBI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
AluI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	231, 875
Alw26I	GTCTC	3 cut(s)	273, 365, 456
Alw44I	GTGCAC	1 cut(s)	871
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	1 cut(s)	393
ApaLI	GTGCAC	1 cut(s)	871
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	205, 907
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	51, 688
AsuC2I	CCSGG	1 cut(s)	742
AsuHPI	GGTGA	4 cut(s)	3, 202, 343, 686
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	2 cut(s)	51, 688
BaeGI	GKGCMC	1 cut(s)	875
BanII	GRGCYC	2 cut(s)	231, 726
BbsI	GAAGAC	3 cut(s)	69, 228, 639
Bbv12I	GWGCWC	2 cut(s)	231, 875
BbvI	GCAGC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	2 cut(s)	291, 830
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	3 cut(s)	273, 365, 456
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	157, 886
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	7 cut(s)	148, 157, 396, 417, 420, 807, 810
BlsI	GCNGC	7 cut(s)	149, 158, 397, 418, 421, 808, 811
Bme1390I	CCNGG	3 cut(s)	291, 742, 830
Bme18I	GGWCC	2 cut(s)	51, 688
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	2 cut(s)	51, 688
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	3 cut(s)	291, 742, 830
BmsI	GCATC	3 cut(s)	99, 134, 743
BpiI	GAAGAC	3 cut(s)	69, 228, 639
Bpu10I	CCTNAGC	2 cut(s)	164, 801
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	742
BsaI	GGTCTC	3 cut(s)	273, 365, 456
BsaJI	CCNNGG	4 cut(s)	94, 355, 417, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 391, 685
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 830
BseDI	CCNNGG	4 cut(s)	94, 355, 417, 627
BseGI	GGATG	3 cut(s)	84, 90, 734
BseLI	CCNNNNNNNGG	3 cut(s)	42, 391, 685
BseMII	CTCAG	3 cut(s)	178, 782, 815
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	338, 584
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	357, 419
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	231, 875
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	741
BslI	CCNNNNNNNGG	3 cut(s)	42, 391, 685
BsmAI	GTCTC	3 cut(s)	273, 365, 456
BsnI	GGCC	1 cut(s)	395
Bso31I	GGTCTC	3 cut(s)	273, 365, 456
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	3 cut(s)	231, 726, 875
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	190, 493, 657
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	3 cut(s)	177, 781, 814
BspFNI	CGCG	2 cut(s)	357, 419
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	501
BspTNI	GGTCTC	3 cut(s)	273, 365, 456
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	94, 355, 417, 627
BssMI	GATC	3 cut(s)	190, 493, 657
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 830
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	2 cut(s)	561, 588
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	110, 161
BstDEI	CTNAG	4 cut(s)	140, 164, 768, 801
BstDSI	CCRYGG	3 cut(s)	94, 355, 417
BstEII	GGTNACC	2 cut(s)	9, 674
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	84, 90, 734
BstFNI	CGCG	2 cut(s)	357, 419
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	193, 496, 660
BstMAI	GTCTC	3 cut(s)	273, 365, 456
BstMBI	GATC	3 cut(s)	190, 493, 657
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 416, 806, 879
BstNI	CCWGG	2 cut(s)	291, 830
BstNSI	RCATGY	1 cut(s)	858
BstPI	GGTNACC	2 cut(s)	9, 674
BstSCI	CCNGG	3 cut(s)	289, 740, 828
BstSFI	CTRYAG	2 cut(s)	157, 886
BstSLI	GKGCMC	1 cut(s)	875
BstUI	CGCG	2 cut(s)	357, 419
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	3 cut(s)	69, 228, 639
BsuRI	GGCC	1 cut(s)	395
BtgI	CCRYGG	3 cut(s)	94, 355, 417
BtsCI	GGATG	3 cut(s)	84, 90, 734
BtsI	GCAGTG	2 cut(s)	619, 853
BtsIMutI	CAGTG	3 cut(s)	619, 853, 875
Cac8I	GCNNGC	2 cut(s)	110, 161
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	51, 688
Cfr42I	CCGCGG	2 cut(s)	358, 420
Csp6I	GTAC	2 cut(s)	574, 664
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	3 cut(s)	95, 661, 855
CviQI	GTAC	2 cut(s)	574, 664
DdeI	CTNAG	4 cut(s)	140, 164, 768, 801
DpnI	GATC	3 cut(s)	192, 495, 659
DpnII	GATC	3 cut(s)	190, 493, 657
Eam1104I	CTCTTC	2 cut(s)	561, 588
EarI	CTCTTC	2 cut(s)	561, 588
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	231, 726
Eco31I	GGTCTC	3 cut(s)	273, 365, 456
Eco47I	GGWCC	2 cut(s)	51, 688
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	729
Eco91I	GGTNACC	2 cut(s)	9, 674
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO65I	GGTNACC	2 cut(s)	9, 674
EcoRI	GAATTC	1 cut(s)	907
EcoRII	CCWGG	2 cut(s)	289, 828
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	231, 726
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	98, 664, 858
FaiI	YATR	6 cut(s)	96, 246, 662, 794, 856, 913
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	3 cut(s)	94, 660, 854
FauI	CCCGC	2 cut(s)	271, 362
Fnu4HI	GCNGC	7 cut(s)	148, 157, 396, 417, 420, 807, 810
FokI	GGATG	3 cut(s)	71, 77, 721
FriOI	GRGCYC	2 cut(s)	231, 726
Fsp4HI	GCNGC	7 cut(s)	148, 157, 396, 417, 420, 807, 810
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	7 cut(s)	148, 157, 396, 417, 420, 807, 810
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	741
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	98, 664, 858
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	755, 766, 775
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	4 cut(s)	3, 202, 343, 686
Hpy166II	GTNNAC	2 cut(s)	287, 873
Hpy188I	TCNGA	7 cut(s)	185, 257, 273, 443, 721, 843, 861
Hpy188III	TCNNGA	5 cut(s)	337, 362, 472, 508, 788
Hpy8I	GTNNAC	2 cut(s)	287, 873
HpyAV	CCTTC	2 cut(s)	95, 556
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	159, 606, 873
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 416, 806, 879
HpyF3I	CTNAG	4 cut(s)	140, 164, 768, 801
Hsp92II	CATG	3 cut(s)	98, 664, 858
HspAI	GCGC	1 cut(s)	112
KspI	CCGCGG	2 cut(s)	358, 420
Kzo9I	GATC	3 cut(s)	190, 493, 657
LmnI	GCTCC	4 cut(s)	119, 246, 351, 706
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	3 cut(s)	99, 134, 743
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	9, 674
MalI	GATC	3 cut(s)	192, 495, 659
MboI	GATC	3 cut(s)	190, 493, 657
MboII	GAAGA	9 cut(s)	71, 74, 227, 230, 233, 550, 578, 605, 644
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	3 cut(s)	231, 726, 875
MluCI	AATT	6 cut(s)	205, 477, 586, 601, 696, 907
MlyI	GAGTC	2 cut(s)	760, 769
MmeI	TCCRAC	3 cut(s)	208, 684, 839
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	3 cut(s)	357, 419, 772
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	3 cut(s)	291, 742, 830
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	291, 830
MvnI	CGCG	2 cut(s)	357, 419
MwoI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 416, 806, 879
NciI	CCSGG	1 cut(s)	742
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	190, 493, 657
NlaIII	CATG	3 cut(s)	98, 664, 858
NlaIV	GGNNCC	1 cut(s)	708
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	9, 674
NspI	RCATGY	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	755
PfoI	TCCNGGA	1 cut(s)	740
PkrI	GCNGC	7 cut(s)	149, 158, 397, 418, 421, 808, 811
PleI	GAGTC	2 cut(s)	760, 769
PpsI	GAGTC	2 cut(s)	760, 769
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 828
PspEI	GGTNACC	2 cut(s)	9, 674
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 828
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	2 cut(s)	51, 688
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	575, 665
RsaNI	GTAC	2 cut(s)	574, 664
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	358, 420
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	7 cut(s)	148, 157, 396, 417, 420, 807, 810
Sau3AI	GATC	3 cut(s)	190, 493, 657
Sau96I	GGNCC	2 cut(s)	51, 688
SchI	GAGTC	2 cut(s)	760, 769
ScrFI	CCNGG	3 cut(s)	291, 742, 830
SduI	GDGCHC	3 cut(s)	231, 726, 875
SfaNI	GCATC	3 cut(s)	99, 134, 743
SfcI	CTRYAG	2 cut(s)	157, 886
Sfr303I	CCGCGG	2 cut(s)	358, 420
SgrBI	CCGCGG	2 cut(s)	358, 420
SinI	GGWCC	2 cut(s)	51, 688
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	205, 477, 586, 601, 696, 907
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	289, 740, 828
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	78, 363, 471, 524
TasI	AATT	6 cut(s)	205, 477, 586, 601, 696, 907
TatI	WGTACW	2 cut(s)	573, 663
TauI	GCSGC	6 cut(s)	150, 398, 419, 422, 809, 812
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	3 cut(s)	619, 853, 875
TseFI	GTSAC	2 cut(s)	9, 674
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	2 cut(s)	9, 674
TspDTI	ATGAA	2 cut(s)	321, 900
TspRI	CASTG	3 cut(s)	619, 853, 875
VneI	GTGCAC	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	51, 688
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 907
XceI	RCATGY	1 cut(s)	858
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.