Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Forward (+)

36574625 .. 36575743

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGAGAGCACCTTGTTGTGAGAAAGCTCACACCAACAAAGGGGCATGGACGAAAGAGGAGGATCAGCGCCTCATCGACCACATCCGCCAGCACGGCGAGGGCTGCTGGCGCTCCCTCCCTAAAGCCGCCGGGTTGCTCAGGTGCGGCAAGAGTTGCAGGTTGAGATGGATAAACTACCTCCGCCCTGACCTCAAGCGTGGCAATTTCACACAAGAAGAAGATGAACTCATCATCAAGCTTCATAGCTTGCTTGGAAACAAATGGTCATTGATTGCGGGCCGATTGCCGGGAAGAACCGACAACGAGATCAAAAACTACTGGAACACACACATCAAGCGAAAGCTCATCAGCCGTGGCCTCGACCCTCAAACCCACCGCCCGCTTAACCAAACCACAACCGCCGCTGCTGCCGCCACGCCCGCCTCTCGCTTGGACCTGAGAAATCGTTCTTCGCCATCGTCCGCTGTATTTGATCACAAAACCATCAAAAACAACAAATTTGAATTGTTGAAGCACCCCAAAATGGAGCATGAGTACTACAATTACAATATAGAATCGGAGGCCAATTGCAGCACCACTACCGGCAGCGGTACCACAACCGAAGAAGATCAAAAACAACAGAACAAGTATCAGTGTTCTGATCTCAACTTGGATCTTTCAATTGGGCTAGAGCCGTTTCAGTCCGAGCCAACTCGGGCATCGTCTGGGAACTCGGCCGAATCAAGACTGCAGCGGATCATAGTTCCCTGTAATAGTAATAATAATCATCAGTTTTTTGGGAGAGTGCAGTCGACGGCGGCGGTGGCGGTGGCTCAGGCGGTGTGTGTGTGCTGCCAGGTTGGAATTCAAAGCAGTGAGGCATGCAGCAATTGTCAGTGCACCAGTAACAATGGCTTCTACAGATTTCACAGACCTGCTTTGAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

311

Amino Acids

34.87

Weight (kDa)

9.06

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	150, 925
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	794
AclWI	GGATC	3 cut(s)	72, 663, 746
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	500, 846
AfaI	GTAC	2 cut(s)	539, 595
AfiI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
AgsI	TTSAA	5 cut(s)	506, 514, 663, 851, 925
AjnI	CCWGG	1 cut(s)	837
AluBI	AGCT	4 cut(s)	29, 241, 249, 346
AluI	AGCT	4 cut(s)	29, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	13, 884
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	3 cut(s)	72, 663, 746
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	4 cut(s)	280, 358, 564, 717
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	8 cut(s)	105, 407, 410, 573, 588, 733, 834, 867
ApoI	RAATTY	2 cut(s)	500, 846
Asp700I	GAANNNNTTC	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	72, 114
AspS9I	GGNCC	2 cut(s)	280, 436
AsuC2I	CCSGG	2 cut(s)	133, 291
AvaI	CYCGRG	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	13, 884
BbvI	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BccI	CCATC	3 cut(s)	162, 466, 494
BceAI	ACGGC	4 cut(s)	112, 339, 661, 813
BciT130I	CCWGG	1 cut(s)	839
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	133, 291
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	2 cut(s)	731, 901
BfoI	RGCGCY	2 cut(s)	73, 115
BfuAI	ACCTGC	2 cut(s)	150, 925
BglI	GCCNNNNNGGC	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	3 cut(s)	133, 291, 839
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	2 cut(s)	280, 436
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	133, 291, 839
BmsI	GCATC	1 cut(s)	710
Bpu10I	CCTNAGC	2 cut(s)	140, 816
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	133, 291
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 289, 526
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	326, 885
BseBI	CCWGG	1 cut(s)	839
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
BseMII	CTCAG	3 cut(s)	154, 431, 830
BseNI	ACTGG	2 cut(s)	326, 885
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	884
BseX3I	CGGCCG	1 cut(s)	717
BseXI	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BsgI	GTGCAG	1 cut(s)	809
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	282, 360, 566, 719
BshNI	GGYRCC	1 cut(s)	593
BsiEI	CGRYCG	1 cut(s)	720
BsiHKAI	GWGCWC	2 cut(s)	13, 884
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	132, 290, 585
BslI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
BsnI	GGCC	4 cut(s)	282, 360, 566, 719
BsoBI	CYCGRG	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	13, 884
Bsp143I	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
BspANI	GGCC	4 cut(s)	282, 360, 566, 719
BspCNI	CTCAG	3 cut(s)	153, 432, 829
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	2 cut(s)	150, 925
BspPI	GGATC	3 cut(s)	72, 663, 746
BspT107I	GGYRCC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	326, 885
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
Bst2UI	CCWGG	1 cut(s)	839
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	7 cut(s)	92, 110, 251, 280, 383, 423, 865
BstDEI	CTNAG	3 cut(s)	140, 440, 816
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	2 cut(s)	73, 115
BstHHI	GCGC	2 cut(s)	72, 114
BstKTI	GATC	7 cut(s)	67, 312, 478, 613, 646, 658, 741
BstMBI	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 105, 111, 156, 410, 413, 422, 806
BstNI	CCWGG	1 cut(s)	839
BstNSI	RCATGY	1 cut(s)	867
BstSCI	CCNGG	3 cut(s)	131, 289, 837
BstSFI	CTRYAG	2 cut(s)	731, 901
BstSLI	GKGCMC	1 cut(s)	884
BstV1I	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BstZI	CGGCCG	1 cut(s)	717
BsuRI	GGCC	4 cut(s)	282, 360, 566, 719
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	3 cut(s)	641, 862, 884
BveI	ACCTGC	2 cut(s)	150, 925
Cac8I	GCNNGC	7 cut(s)	92, 110, 251, 280, 383, 423, 865
CfoI	GCGC	2 cut(s)	72, 114
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	280, 436
Csp6I	GTAC	2 cut(s)	538, 594
CviAII	CATG	3 cut(s)	48, 533, 864
CviQI	GTAC	2 cut(s)	538, 594
DdeI	CTNAG	3 cut(s)	140, 440, 816
DpnI	GATC	7 cut(s)	66, 311, 477, 612, 645, 657, 740
DpnII	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
EaeI	YGGCCR	1 cut(s)	717
EagI	CGGCCG	1 cut(s)	717
EciI	GGCGGA	2 cut(s)	77, 173
EclXI	CGGCCG	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	837
FaeI	CATG	3 cut(s)	51, 536, 867
FaiI	YATR	7 cut(s)	49, 246, 534, 554, 743, 865, 931
FatI	CATG	3 cut(s)	47, 532, 863
FauI	CCCGC	3 cut(s)	271, 390, 430
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	794
FokI	GGATG	1 cut(s)	71
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	2 cut(s)	71, 113
HaeII	RGCGCY	2 cut(s)	73, 115
HaeIII	GGCC	4 cut(s)	282, 360, 566, 719
HapII	CCGG	3 cut(s)	132, 290, 585
HhaI	GCGC	2 cut(s)	72, 114
Hin1II	CATG	3 cut(s)	51, 536, 867
Hin6I	GCGC	2 cut(s)	70, 112
HinP1I	GCGC	2 cut(s)	70, 112
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	557, 722, 925
HpaII	CCGG	3 cut(s)	132, 290, 585
Hpy166II	GTNNAC	2 cut(s)	795, 882
Hpy188I	TCNGA	3 cut(s)	562, 643, 688
Hpy188III	TCNNGA	1 cut(s)	726
Hpy8I	GTNNAC	2 cut(s)	795, 882
Hpy99I	CGWCG	1 cut(s)	799
HpyCH4V	TGCA	6 cut(s)	159, 573, 733, 790, 867, 882
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 105, 111, 156, 410, 413, 422, 806
HpyF3I	CTNAG	3 cut(s)	140, 440, 816
Hsp92II	CATG	3 cut(s)	51, 536, 867
HspAI	GCGC	2 cut(s)	70, 112
KpnI	GGTACC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
LmnI	GCTCC	2 cut(s)	119, 529
Lsp1109I	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	7 cut(s)	66, 311, 477, 612, 645, 657, 740
MboI	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
MboII	GAAGA	6 cut(s)	230, 233, 306, 444, 617, 620
MfeI	CAATTG	3 cut(s)	568, 663, 871
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	13, 884
MluCI	AATT	8 cut(s)	205, 500, 506, 544, 568, 663, 846, 871
MmeI	TCCRAC	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	4 cut(s)	407, 467, 591, 736
MspI	CCGG	3 cut(s)	132, 290, 585
MspR9I	CCNGG	3 cut(s)	133, 291, 839
MunI	CAATTG	3 cut(s)	568, 663, 871
MvaI	CCWGG	1 cut(s)	839
MwoI	GCNNNNNNNGC	8 cut(s)	96, 105, 111, 156, 410, 413, 422, 806
NciI	CCSGG	2 cut(s)	133, 291
NdeII	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
NlaIII	CATG	3 cut(s)	51, 536, 867
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	695
NspI	RCATGY	1 cut(s)	867
PaeI	GCATGC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	557, 722, 925
Psp6I	CCWGG	1 cut(s)	837
PspGI	CCWGG	1 cut(s)	837
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	280, 436
PstI	CTGCAG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	2 cut(s)	539, 595
RsaNI	GTAC	2 cut(s)	538, 594
SalI	GTCGAC	1 cut(s)	793
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	7 cut(s)	64, 309, 475, 610, 643, 655, 738
Sau96I	GGNCC	2 cut(s)	280, 436
ScaI	AGTACT	1 cut(s)	539
ScrFI	CCNGG	3 cut(s)	133, 291, 839
SduI	GDGCHC	2 cut(s)	13, 884
SfaNI	GCATC	1 cut(s)	710
SfcI	CTRYAG	2 cut(s)	731, 901
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	867
Sse9I	AATT	8 cut(s)	205, 500, 506, 544, 568, 663, 846, 871
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	3 cut(s)	131, 289, 837
TaqI	TCGA	3 cut(s)	78, 363, 794
TasI	AATT	8 cut(s)	205, 500, 506, 544, 568, 663, 846, 871
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	5 cut(s)	131, 150, 407, 416, 803
TfiI	GAWTC	3 cut(s)	557, 722, 925
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	641, 862, 884
TseI	GCWGC	8 cut(s)	105, 407, 410, 573, 588, 733, 834, 867
TspDTI	ATGAA	2 cut(s)	233, 240
TspRI	CASTG	3 cut(s)	641, 862, 884
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	500, 846
XceI	RCATGY	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	671
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.