Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

49441208 .. 49442798

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCGGGGTTGCTTAGATGCGGCAAGAGTTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACTGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCTCTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAGAGAAAGCTCCTCACCCGCGGTCTCGACCCTCAAACCCACCGCCCCCTGAACGAGGCCCCGGCCACCGCCACCGCCACCGCCGCGGCAACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCGTTTTTGTCAGTCGAGAAAATTAACAGCCTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGTCCAATAACAATAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAACAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAACAACCGAGGAAGACCAACAACCACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAACCGTTTCAGTCCGAGCCGACTCGGGCATCCTCCGGGAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATCACGACATGTTTGCACAGGCGGCGGCGGTGTGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.5

Weight (kDa)

8.64

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	9.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.9e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	357, 422
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	205, 910
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	578, 668
AfiI	CCNNNNNNNGG	3 cut(s)	42, 391, 688
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	511, 556, 699, 910
AjnI	CCWGG	2 cut(s)	289, 831
AluBI	AGCT	5 cut(s)	29, 229, 241, 249, 346
AluI	AGCT	5 cut(s)	29, 229, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	231, 878
Alw26I	GTCTC	3 cut(s)	273, 365, 459
Alw44I	GTGCAC	1 cut(s)	874
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	2 cut(s)	393, 399
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	1 cut(s)	849
ApoI	RAATTY	2 cut(s)	205, 910
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	51, 394, 691
AsuC2I	CCSGG	2 cut(s)	398, 745
AsuHPI	GGTGA	3 cut(s)	3, 343, 689
AvaI	CYCGRG	1 cut(s)	732
AvaII	GGWCC	2 cut(s)	51, 691
BaeGI	GKGCMC	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	69, 228, 642
Bbv12I	GWGCWC	2 cut(s)	231, 878
BbvI	GCAGC	1 cut(s)	861
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BciT130I	CCWGG	2 cut(s)	291, 833
BcnI	CCSGG	2 cut(s)	398, 745
BcoDI	GTCTC	3 cut(s)	273, 365, 459
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	889
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	6 cut(s)	148, 420, 423, 810, 813, 850
BlsI	GCNGC	6 cut(s)	149, 421, 424, 811, 814, 851
Bme1390I	CCNGG	4 cut(s)	291, 398, 745, 833
Bme18I	GGWCC	2 cut(s)	51, 691
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	3 cut(s)	51, 394, 691
BmiI	GGNNCC	2 cut(s)	396, 711
BmrFI	CCNGG	4 cut(s)	291, 398, 745, 833
BmsI	GCATC	3 cut(s)	99, 134, 746
BpiI	GAAGAC	3 cut(s)	69, 228, 642
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	398, 745
BsaI	GGTCTC	3 cut(s)	273, 365, 459
BsaJI	CCNNGG	5 cut(s)	94, 355, 396, 420, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 391, 688
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 833
BseDI	CCNNGG	5 cut(s)	94, 355, 396, 420, 630
BseGI	GGATG	3 cut(s)	84, 90, 737
BseLI	CCNNNNNNNGG	3 cut(s)	42, 391, 688
BseMII	CTCAG	2 cut(s)	178, 785
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	338, 587
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	861
Bsh1236I	CGCG	2 cut(s)	357, 422
BshFI	GGCC	2 cut(s)	395, 401
BsiHKAI	GWGCWC	2 cut(s)	231, 878
BsiHKCI	CYCGRG	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	398, 744
BslI	CCNNNNNNNGG	3 cut(s)	42, 391, 688
BsmAI	GTCTC	3 cut(s)	273, 365, 459
BsnI	GGCC	2 cut(s)	395, 401
Bso31I	GGTCTC	3 cut(s)	273, 365, 459
BsoBI	CYCGRG	1 cut(s)	732
Bsp1286I	GDGCHC	2 cut(s)	231, 878
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	190, 496, 660
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	395, 401
BspCNI	CTCAG	2 cut(s)	177, 784
BspFNI	CGCG	2 cut(s)	357, 422
BspLI	GGNNCC	2 cut(s)	396, 711
BspPI	GGATC	1 cut(s)	504
BspTNI	GGTCTC	3 cut(s)	273, 365, 459
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	5 cut(s)	94, 355, 396, 420, 630
BssMI	GATC	3 cut(s)	190, 496, 660
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 833
Bst4CI	ACNGT	2 cut(s)	462, 714
Bst6I	CTCTTC	2 cut(s)	564, 591
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	2 cut(s)	110, 161
BstDEI	CTNAG	3 cut(s)	140, 164, 771
BstDSI	CCRYGG	3 cut(s)	94, 355, 420
BstEII	GGTNACC	2 cut(s)	9, 677
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	84, 90, 737
BstFNI	CGCG	2 cut(s)	357, 422
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	193, 499, 663
BstMAI	GTCTC	3 cut(s)	273, 365, 459
BstMBI	GATC	3 cut(s)	190, 496, 660
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 105, 156, 419, 809, 882
BstNI	CCWGG	2 cut(s)	291, 833
BstNSI	RCATGY	2 cut(s)	799, 861
BstPI	GGTNACC	2 cut(s)	9, 677
BstSCI	CCNGG	4 cut(s)	289, 396, 743, 831
BstSFI	CTRYAG	1 cut(s)	889
BstSLI	GKGCMC	1 cut(s)	878
BstUI	CGCG	2 cut(s)	357, 422
BstV1I	GCAGC	1 cut(s)	861
BstV2I	GAAGAC	3 cut(s)	69, 228, 642
BsuRI	GGCC	2 cut(s)	395, 401
BtgI	CCRYGG	3 cut(s)	94, 355, 420
BtsCI	GGATG	3 cut(s)	84, 90, 737
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	3 cut(s)	210, 622, 878
Cac8I	GCNNGC	2 cut(s)	110, 161
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	51, 394, 691
Cfr42I	CCGCGG	2 cut(s)	358, 423
Csp6I	GTAC	2 cut(s)	577, 667
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	4 cut(s)	95, 664, 796, 858
CviQI	GTAC	2 cut(s)	577, 667
DdeI	CTNAG	3 cut(s)	140, 164, 771
DpnI	GATC	3 cut(s)	192, 498, 662
DpnII	GATC	3 cut(s)	190, 496, 660
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	564, 591
EarI	CTCTTC	2 cut(s)	564, 591
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	3 cut(s)	273, 365, 459
Eco47I	GGWCC	2 cut(s)	51, 691
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	732
Eco91I	GGTNACC	2 cut(s)	9, 677
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	394
EcoO65I	GGTNACC	2 cut(s)	9, 677
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	289, 831
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	98, 667, 799, 861
FaiI	YATR	6 cut(s)	96, 246, 665, 797, 859, 916
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	4 cut(s)	94, 663, 795, 857
FauI	CCCGC	3 cut(s)	124, 271, 362
Fnu4HI	GCNGC	6 cut(s)	148, 420, 423, 810, 813, 850
FokI	GGATG	3 cut(s)	71, 77, 724
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	6 cut(s)	148, 420, 423, 810, 813, 850
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	6 cut(s)	148, 420, 423, 810, 813, 850
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	395, 401
HapII	CCGG	2 cut(s)	398, 744
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	98, 667, 799, 861
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	730, 758, 769, 778
HpaII	CCGG	2 cut(s)	398, 744
HphI	GGTGA	3 cut(s)	3, 343, 689
Hpy166II	GTNNAC	2 cut(s)	287, 876
Hpy188I	TCNGA	6 cut(s)	185, 257, 273, 446, 724, 846
Hpy188III	TCNNGA	5 cut(s)	337, 362, 475, 511, 791
Hpy8I	GTNNAC	2 cut(s)	287, 876
HpyAV	CCTTC	2 cut(s)	95, 559
HpyCH4III	ACNGT	2 cut(s)	462, 714
HpyCH4V	TGCA	4 cut(s)	159, 609, 803, 876
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 105, 156, 419, 809, 882
HpyF3I	CTNAG	3 cut(s)	140, 164, 771
Hsp92II	CATG	4 cut(s)	98, 667, 799, 861
HspAI	GCGC	1 cut(s)	112
KspI	CCGCGG	2 cut(s)	358, 423
Kzo9I	GATC	3 cut(s)	190, 496, 660
LmnI	GCTCC	3 cut(s)	119, 246, 351
Lsp1109I	GCAGC	1 cut(s)	861
LweI	GCATC	3 cut(s)	99, 134, 746
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	9, 677
MalI	GATC	3 cut(s)	192, 498, 662
MboI	GATC	3 cut(s)	190, 496, 660
MboII	GAAGA	8 cut(s)	71, 74, 227, 230, 233, 581, 608, 647
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	2 cut(s)	231, 878
MluCI	AATT	6 cut(s)	205, 480, 589, 604, 699, 910
MlyI	GAGTC	4 cut(s)	724, 763, 767, 772
MmeI	TCCRAC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	3 cut(s)	357, 422, 775
MspI	CCGG	2 cut(s)	398, 744
MspR9I	CCNGG	4 cut(s)	291, 398, 745, 833
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	2 cut(s)	291, 833
MvnI	CGCG	2 cut(s)	357, 422
MwoI	GCNNNNNNNGC	6 cut(s)	96, 105, 156, 419, 809, 882
NciI	CCSGG	2 cut(s)	398, 745
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	190, 496, 660
NlaIII	CATG	4 cut(s)	98, 667, 799, 861
NlaIV	GGNNCC	2 cut(s)	396, 711
NmeAIII	GCCGAG	2 cut(s)	412, 781
NmuCI	GTSAC	2 cut(s)	9, 677
NspI	RCATGY	2 cut(s)	799, 861
PciI	ACATGT	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	714
PfoI	TCCNGGA	1 cut(s)	743
PkrI	GCNGC	6 cut(s)	149, 421, 424, 811, 814, 851
PleI	GAGTC	4 cut(s)	724, 763, 766, 772
PpsI	GAGTC	4 cut(s)	724, 763, 766, 772
PscI	ACATGT	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 831
PspEI	GGTNACC	2 cut(s)	9, 677
PspGI	CCWGG	2 cut(s)	289, 831
PspN4I	GGNNCC	2 cut(s)	396, 711
PspPI	GGNCC	3 cut(s)	51, 394, 691
RsaI	GTAC	2 cut(s)	578, 668
RsaNI	GTAC	2 cut(s)	577, 667
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	358, 423
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	6 cut(s)	148, 420, 423, 810, 813, 850
Sau3AI	GATC	3 cut(s)	190, 496, 660
Sau96I	GGNCC	3 cut(s)	51, 394, 691
SchI	GAGTC	4 cut(s)	724, 763, 767, 772
ScrFI	CCNGG	4 cut(s)	291, 398, 745, 833
SduI	GDGCHC	2 cut(s)	231, 878
SfaNI	GCATC	3 cut(s)	99, 134, 746
SfcI	CTRYAG	1 cut(s)	889
Sfr303I	CCGCGG	2 cut(s)	358, 423
SgrBI	CCGCGG	2 cut(s)	358, 423
SinI	GGWCC	2 cut(s)	51, 691
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	205, 480, 589, 604, 699, 910
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	289, 396, 743, 831
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	462, 714
TaqI	TCGA	3 cut(s)	78, 363, 474
TasI	AATT	6 cut(s)	205, 480, 589, 604, 699, 910
TatI	WGTACW	2 cut(s)	576, 666
TauI	GCSGC	5 cut(s)	150, 422, 425, 812, 815
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	3 cut(s)	217, 622, 878
TseFI	GTSAC	2 cut(s)	9, 677
TseI	GCWGC	1 cut(s)	849
Tsp45I	GTSAC	2 cut(s)	9, 677
TspDTI	ATGAA	2 cut(s)	321, 903
TspRI	CASTG	3 cut(s)	217, 622, 878
VneI	GTGCAC	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	51, 691
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 910
XceI	RCATGY	2 cut(s)	799, 861
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.