Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

54626066 .. 54627997

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG422400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGTAATTCTTTCACACATAATCTTCGAAACCCGTCATTCATTTTCCATGTTTGTGTTTTGTTCGGTTGCTTAACAGAGAATTTTCATGTGGGAACAGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCTCTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAAAGAAAGCTCCTCACCCGCGGTCTCGACCCTCAAACCCACCGCCCCCTGAACGAGGCCCCGGCCACCGCCACCGCCACCGCCGCGGCAACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCGTTTTTGTCAGTCGAGAAAATTAACAGCCTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGACCAATAACAAGAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAACAATAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAACAACCGAGGAAGACCAACAACCACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAACCGTTTCAGTCCGAGCCGACTCGGGCATCCTCCGGGAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATCACGACATGTTTGCACAGGCGGCGGCGGTATGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

38.23

Weight (kDa)

8.67

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 46	1.4e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 107	5.6e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	99 - 143	3.4e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	102 - 147	1.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	453, 518
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	211, 301, 1009
AfaI	GTAC	2 cut(s)	674, 767
AfiI	CCNNNNNNNGG	3 cut(s)	42, 487, 787
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	4 cut(s)	607, 652, 798, 1009
AjnI	CCWGG	2 cut(s)	385, 930
AluBI	AGCT	7 cut(s)	29, 131, 252, 325, 337, 345, 442
AluI	AGCT	7 cut(s)	29, 131, 252, 325, 337, 345, 442
Alw21I	GWGCWC	2 cut(s)	327, 977
Alw26I	GTCTC	3 cut(s)	369, 461, 555
Alw44I	GTGCAC	1 cut(s)	973
AlwI	GGATC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	2 cut(s)	489, 495
ApaLI	GTGCAC	1 cut(s)	973
ApeKI	GCWGC	2 cut(s)	252, 948
ApoI	RAATTY	3 cut(s)	211, 301, 1009
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	51, 490, 790
AsuC2I	CCSGG	2 cut(s)	494, 844
AsuHPI	GGTGA	4 cut(s)	3, 298, 439, 788
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	51, 790
BaeGI	GKGCMC	1 cut(s)	977
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	3 cut(s)	69, 324, 741
Bbv12I	GWGCWC	2 cut(s)	327, 977
BbvI	GCAGC	2 cut(s)	239, 960
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	2 cut(s)	387, 932
BcnI	CCSGG	2 cut(s)	494, 844
BcoDI	GTCTC	3 cut(s)	369, 461, 555
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	253, 988
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	7 cut(s)	244, 253, 516, 519, 909, 912, 949
BlsI	GCNGC	7 cut(s)	245, 254, 517, 520, 910, 913, 950
Bme1390I	CCNGG	4 cut(s)	387, 494, 844, 932
Bme18I	GGWCC	2 cut(s)	51, 790
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	3 cut(s)	51, 490, 790
BmiI	GGNNCC	2 cut(s)	492, 810
BmrFI	CCNGG	4 cut(s)	387, 494, 844, 932
BmsI	GCATC	3 cut(s)	99, 230, 845
BpiI	GAAGAC	3 cut(s)	69, 324, 741
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	494, 844
BsaI	GGTCTC	3 cut(s)	369, 461, 555
BsaJI	CCNNGG	5 cut(s)	94, 451, 492, 516, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 487, 787
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	387, 932
BseDI	CCNNGG	5 cut(s)	94, 451, 492, 516, 729
BseGI	GGATG	3 cut(s)	84, 90, 836
BseLI	CCNNNNNNNGG	3 cut(s)	42, 487, 787
BseMII	CTCAG	2 cut(s)	274, 884
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	434, 683
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	2 cut(s)	239, 960
Bsh1236I	CGCG	2 cut(s)	453, 518
BshFI	GGCC	2 cut(s)	491, 497
BsiHKAI	GWGCWC	2 cut(s)	327, 977
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	2 cut(s)	494, 843
BslI	CCNNNNNNNGG	3 cut(s)	42, 487, 787
BsmAI	GTCTC	3 cut(s)	369, 461, 555
BsnI	GGCC	2 cut(s)	491, 497
Bso31I	GGTCTC	3 cut(s)	369, 461, 555
BsoBI	CYCGRG	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	327, 977
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	3 cut(s)	286, 592, 759
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	491, 497
BspCNI	CTCAG	2 cut(s)	273, 883
BspFNI	CGCG	2 cut(s)	453, 518
BspLI	GGNNCC	2 cut(s)	492, 810
BspMAI	CTGCAG	1 cut(s)	257
BspPI	GGATC	1 cut(s)	600
BspT104I	TTCGAA	1 cut(s)	157
BspTNI	GGTCTC	3 cut(s)	369, 461, 555
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	5 cut(s)	94, 451, 492, 516, 729
BssMI	GATC	3 cut(s)	286, 592, 759
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	387, 932
Bst4CI	ACNGT	2 cut(s)	558, 813
Bst6I	CTCTTC	2 cut(s)	660, 690
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	765
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	110, 257
BstDEI	CTNAG	3 cut(s)	236, 260, 870
BstDSI	CCRYGG	3 cut(s)	94, 451, 516
BstEII	GGTNACC	2 cut(s)	9, 776
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	84, 90, 836
BstFNI	CGCG	2 cut(s)	453, 518
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	289, 595, 762
BstMAI	GTCTC	3 cut(s)	369, 461, 555
BstMBI	GATC	3 cut(s)	286, 592, 759
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 249, 252, 515, 908, 981
BstNI	CCWGG	2 cut(s)	387, 932
BstNSI	RCATGY	2 cut(s)	898, 960
BstPI	GGTNACC	2 cut(s)	9, 776
BstSCI	CCNGG	4 cut(s)	385, 492, 842, 930
BstSFI	CTRYAG	2 cut(s)	253, 988
BstSLI	GKGCMC	1 cut(s)	977
BstUI	CGCG	2 cut(s)	453, 518
BstV1I	GCAGC	2 cut(s)	239, 960
BstV2I	GAAGAC	3 cut(s)	69, 324, 741
BsuRI	GGCC	2 cut(s)	491, 497
BtgI	CCRYGG	3 cut(s)	94, 451, 516
BtsCI	GGATG	3 cut(s)	84, 90, 836
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	721, 977
Cac8I	GCNNGC	2 cut(s)	110, 257
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	51, 490, 790
Cfr42I	CCGCGG	2 cut(s)	454, 519
Csp6I	GTAC	2 cut(s)	673, 766
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	6 cut(s)	95, 179, 218, 763, 895, 957
CviQI	GTAC	2 cut(s)	673, 766
DdeI	CTNAG	3 cut(s)	236, 260, 870
DpnI	GATC	3 cut(s)	288, 594, 761
DpnII	GATC	3 cut(s)	286, 592, 759
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	2 cut(s)	660, 690
EarI	CTCTTC	2 cut(s)	660, 690
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	3 cut(s)	369, 461, 555
Eco47I	GGWCC	2 cut(s)	51, 790
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	831
Eco91I	GGTNACC	2 cut(s)	9, 776
EcoICRI	GAGCTC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	2 cut(s)	9, 776
EcoRI	GAATTC	1 cut(s)	1009
EcoRII	CCWGG	2 cut(s)	385, 930
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	6 cut(s)	98, 182, 221, 766, 898, 960
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	6 cut(s)	94, 178, 217, 762, 894, 956
FauI	CCCGC	2 cut(s)	367, 458
Fnu4HI	GCNGC	7 cut(s)	244, 253, 516, 519, 909, 912, 949
FokI	GGATG	3 cut(s)	71, 77, 823
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	244, 253, 516, 519, 909, 912, 949
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	7 cut(s)	244, 253, 516, 519, 909, 912, 949
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	491, 497
HapII	CCGG	2 cut(s)	494, 843
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	98, 182, 221, 766, 898, 960
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	829, 857, 868, 877
HpaII	CCGG	2 cut(s)	494, 843
HphI	GGTGA	4 cut(s)	3, 298, 439, 788
Hpy166II	GTNNAC	2 cut(s)	383, 975
Hpy188I	TCNGA	6 cut(s)	281, 353, 369, 542, 823, 945
Hpy188III	TCNNGA	4 cut(s)	458, 571, 607, 890
Hpy8I	GTNNAC	2 cut(s)	383, 975
HpyAV	CCTTC	2 cut(s)	95, 655
HpyCH4III	ACNGT	2 cut(s)	558, 813
HpyCH4V	TGCA	4 cut(s)	255, 708, 902, 975
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 249, 252, 515, 908, 981
HpyF3I	CTNAG	3 cut(s)	236, 260, 870
Hsp92II	CATG	6 cut(s)	98, 182, 221, 766, 898, 960
HspAI	GCGC	1 cut(s)	112
KspI	CCGCGG	2 cut(s)	454, 519
Kzo9I	GATC	3 cut(s)	286, 592, 759
LmnI	GCTCC	3 cut(s)	119, 342, 447
Lsp1109I	GCAGC	2 cut(s)	239, 960
LweI	GCATC	3 cut(s)	99, 230, 845
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	2 cut(s)	9, 776
MalI	GATC	3 cut(s)	288, 594, 761
MboI	GATC	3 cut(s)	286, 592, 759
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	2 cut(s)	327, 977
MluCI	AATT	8 cut(s)	136, 211, 301, 576, 688, 703, 798, 1009
MlyI	GAGTC	4 cut(s)	823, 862, 866, 871
MmeI	TCCRAC	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	2 cut(s)	203, 579
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	3 cut(s)	453, 518, 874
MspI	CCGG	2 cut(s)	494, 843
MspR9I	CCNGG	4 cut(s)	387, 494, 844, 932
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	2 cut(s)	387, 932
MvnI	CGCG	2 cut(s)	453, 518
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 249, 252, 515, 908, 981
NciI	CCSGG	2 cut(s)	494, 844
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	286, 592, 759
NlaIII	CATG	6 cut(s)	98, 182, 221, 766, 898, 960
NlaIV	GGNNCC	2 cut(s)	492, 810
NmeAIII	GCCGAG	2 cut(s)	508, 880
NmuCI	GTSAC	2 cut(s)	9, 776
NspI	RCATGY	2 cut(s)	898, 960
NspV	TTCGAA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	813
PfoI	TCCNGGA	1 cut(s)	842
PkrI	GCNGC	7 cut(s)	245, 254, 517, 520, 910, 913, 950
PleI	GAGTC	4 cut(s)	823, 862, 865, 871
PpsI	GAGTC	4 cut(s)	823, 862, 865, 871
PscI	ACATGT	1 cut(s)	894
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	385, 930
PspEI	GGTNACC	2 cut(s)	9, 776
PspGI	CCWGG	2 cut(s)	385, 930
PspN4I	GGNNCC	2 cut(s)	492, 810
PspPI	GGNCC	3 cut(s)	51, 490, 790
PstI	CTGCAG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	674, 767
RsaNI	GTAC	2 cut(s)	673, 766
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	327
SacII	CCGCGG	2 cut(s)	454, 519
SaqAI	TTAA	2 cut(s)	203, 579
SatI	GCNGC	7 cut(s)	244, 253, 516, 519, 909, 912, 949
Sau3AI	GATC	3 cut(s)	286, 592, 759
Sau96I	GGNCC	3 cut(s)	51, 490, 790
SchI	GAGTC	4 cut(s)	823, 862, 866, 871
ScrFI	CCNGG	4 cut(s)	387, 494, 844, 932
SduI	GDGCHC	2 cut(s)	327, 977
SfaNI	GCATC	3 cut(s)	99, 230, 845
SfcI	CTRYAG	2 cut(s)	253, 988
Sfr303I	CCGCGG	2 cut(s)	454, 519
SfuI	TTCGAA	1 cut(s)	157
SgrBI	CCGCGG	2 cut(s)	454, 519
SinI	GGWCC	2 cut(s)	51, 790
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	8 cut(s)	136, 211, 301, 576, 688, 703, 798, 1009
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	4 cut(s)	385, 492, 842, 930
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	558, 813
TaqI	TCGA	5 cut(s)	78, 157, 459, 570, 623
TasI	AATT	8 cut(s)	136, 211, 301, 576, 688, 703, 798, 1009
TatI	WGTACW	2 cut(s)	672, 765
TauI	GCSGC	5 cut(s)	246, 518, 521, 911, 914
Tru1I	TTAA	2 cut(s)	203, 579
Tru9I	TTAA	2 cut(s)	203, 579
TscAI	CASTG	2 cut(s)	721, 977
TseFI	GTSAC	2 cut(s)	9, 776
TseI	GCWGC	2 cut(s)	252, 948
Tsp45I	GTSAC	2 cut(s)	9, 776
TspDTI	ATGAA	4 cut(s)	160, 206, 417, 1002
TspRI	CASTG	2 cut(s)	721, 977
VneI	GTGCAC	1 cut(s)	973
VpaK11BI	GGWCC	2 cut(s)	51, 790
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	3 cut(s)	211, 301, 1009
XceI	RCATGY	2 cut(s)	898, 960
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.