Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Forward (+)

17340213 .. 17341354

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001551

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAGGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCTTTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAGAGAAAGCTCCTCACCCGCGGCCTCGACCCTCAAACCCACCGCCCCCTGAACGAGGCCGCCACCGCCACCGTCACCGCCGCGGCGACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCTTTTTTGTCAGTCGAGAAAATTAACAGCCTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGACCAATAACAATAAGGTTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAACAACAATAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAATAACGGAGGAAGACCAACAACCACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAGCCGTTTCAGTCCGAGCCGACTCGGGCATCCTCCGGCAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATCACGATATGTTTGCTCAGGCGGCGGCGGTGTGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.67

Weight (kDa)

8.64

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	9.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.9e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	357, 419
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	205, 913
AfaI	GTAC	2 cut(s)	575, 671
AfiI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
AgsI	TTSAA	4 cut(s)	508, 553, 702, 913
AjnI	CCWGG	2 cut(s)	289, 834
AluBI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
AluI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	231, 881
Alw26I	GTCTC	1 cut(s)	456
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	2 cut(s)	358, 393
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	2 cut(s)	156, 852
ApoI	RAATTY	2 cut(s)	205, 913
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	51, 694
AsuHPI	GGTGA	5 cut(s)	3, 202, 343, 403, 692
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	2 cut(s)	51, 694
BaeGI	GKGCMC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	69, 228, 645
Bbv12I	GWGCWC	2 cut(s)	231, 881
BbvI	GCAGC	2 cut(s)	143, 864
BceAI	ACGGC	1 cut(s)	700
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	2 cut(s)	291, 836
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	157, 892
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	9 cut(s)	148, 157, 358, 396, 417, 420, 813, 816, 853
BlsI	GCNGC	9 cut(s)	149, 158, 359, 397, 418, 421, 814, 817, 854
Bme1390I	CCNGG	2 cut(s)	291, 836
Bme18I	GGWCC	2 cut(s)	51, 694
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	2 cut(s)	51, 694
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	2 cut(s)	291, 836
BmsI	GCATC	3 cut(s)	99, 134, 749
BpiI	GAAGAC	3 cut(s)	69, 228, 645
BpmI	CTGGAG	1 cut(s)	731
Bpu10I	CCTNAGC	2 cut(s)	164, 807
BpuEI	CTTGAG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	94, 355, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 391, 691
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 836
BseDI	CCNNGG	3 cut(s)	94, 355, 417
BseGI	GGATG	3 cut(s)	84, 90, 740
BseLI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
BseMII	CTCAG	3 cut(s)	178, 788, 821
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	338, 584
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	2 cut(s)	143, 864
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	357, 419
BshFI	GGCC	2 cut(s)	360, 395
BsiHKAI	GWGCWC	2 cut(s)	231, 881
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	747
BslI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
BsmAI	GTCTC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	360, 395
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	735
Bsp1286I	GDGCHC	2 cut(s)	231, 881
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	190, 493, 663
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	360, 395
BspCNI	CTCAG	3 cut(s)	177, 787, 820
BspFNI	CGCG	2 cut(s)	357, 419
BspLI	GGNNCC	1 cut(s)	714
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	94, 355, 417
BssMI	GATC	3 cut(s)	190, 493, 663
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 836
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	561, 594
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	110, 161
BstDEI	CTNAG	4 cut(s)	140, 164, 774, 807
BstDSI	CCRYGG	3 cut(s)	94, 355, 417
BstEII	GGTNACC	2 cut(s)	9, 680
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	84, 90, 740
BstFNI	CGCG	2 cut(s)	357, 419
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	193, 496, 666
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	190, 493, 663
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 401, 812, 885
BstNI	CCWGG	2 cut(s)	291, 836
BstNSI	RCATGY	1 cut(s)	864
BstPI	GGTNACC	2 cut(s)	9, 680
BstSCI	CCNGG	2 cut(s)	289, 834
BstSFI	CTRYAG	2 cut(s)	157, 892
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	2 cut(s)	357, 419
BstV1I	GCAGC	2 cut(s)	143, 864
BstV2I	GAAGAC	3 cut(s)	69, 228, 645
BsuRI	GGCC	2 cut(s)	360, 395
BtgI	CCRYGG	3 cut(s)	94, 355, 417
BtsCI	GGATG	3 cut(s)	84, 90, 740
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	625, 881
Cac8I	GCNNGC	2 cut(s)	110, 161
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	51, 694
Cfr42I	CCGCGG	2 cut(s)	358, 420
Csp6I	GTAC	2 cut(s)	574, 670
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	3 cut(s)	95, 667, 861
CviQI	GTAC	2 cut(s)	574, 670
DdeI	CTNAG	4 cut(s)	140, 164, 774, 807
DpnI	GATC	3 cut(s)	192, 495, 665
DpnII	GATC	3 cut(s)	190, 493, 663
Eam1104I	CTCTTC	2 cut(s)	561, 594
EarI	CTCTTC	2 cut(s)	561, 594
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	51, 694
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	735
Eco91I	GGTNACC	2 cut(s)	9, 680
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO65I	GGTNACC	2 cut(s)	9, 680
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	289, 834
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	98, 670, 864
FaiI	YATR	6 cut(s)	96, 246, 668, 800, 862, 919
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	3 cut(s)	94, 666, 860
FauI	CCCGC	2 cut(s)	271, 362
Fnu4HI	GCNGC	9 cut(s)	148, 157, 358, 396, 417, 420, 813, 816, 853
FokI	GGATG	3 cut(s)	71, 77, 727
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	9 cut(s)	148, 157, 358, 396, 417, 420, 813, 816, 853
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	9 cut(s)	148, 157, 358, 396, 417, 420, 813, 816, 853
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	731
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	360, 395
HapII	CCGG	1 cut(s)	747
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	98, 670, 864
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	733, 761, 772, 781
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	5 cut(s)	3, 202, 343, 403, 692
Hpy166II	GTNNAC	2 cut(s)	287, 879
Hpy188I	TCNGA	5 cut(s)	185, 257, 443, 727, 849
Hpy188III	TCNNGA	4 cut(s)	337, 472, 508, 794
Hpy8I	GTNNAC	2 cut(s)	287, 879
HpyAV	CCTTC	2 cut(s)	95, 556
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	159, 612, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 401, 812, 885
HpyF3I	CTNAG	4 cut(s)	140, 164, 774, 807
Hsp92II	CATG	3 cut(s)	98, 670, 864
HspAI	GCGC	1 cut(s)	112
KspI	CCGCGG	2 cut(s)	358, 420
Kzo9I	GATC	3 cut(s)	190, 493, 663
LmnI	GCTCC	4 cut(s)	119, 246, 351, 712
Lsp1109I	GCAGC	2 cut(s)	143, 864
LweI	GCATC	3 cut(s)	99, 134, 749
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	9, 409, 680
MalI	GATC	3 cut(s)	192, 495, 665
MboI	GATC	3 cut(s)	190, 493, 663
MboII	GAAGA	8 cut(s)	71, 74, 227, 230, 233, 578, 611, 650
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	231, 881
MluCI	AATT	6 cut(s)	205, 477, 592, 607, 702, 913
MlyI	GAGTC	4 cut(s)	727, 766, 770, 775
MmeI	TCCRAC	1 cut(s)	208
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	3 cut(s)	357, 419, 778
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	2 cut(s)	291, 836
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	291, 836
MvnI	CGCG	2 cut(s)	357, 419
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 401, 812, 885
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	190, 493, 663
NlaIII	CATG	3 cut(s)	98, 670, 864
NlaIV	GGNNCC	1 cut(s)	714
NmeAIII	GCCGAG	2 cut(s)	409, 784
NmuCI	GTSAC	3 cut(s)	9, 409, 680
NspI	RCATGY	1 cut(s)	864
PkrI	GCNGC	9 cut(s)	149, 158, 359, 397, 418, 421, 814, 817, 854
PleI	GAGTC	4 cut(s)	727, 766, 769, 775
PpsI	GAGTC	4 cut(s)	727, 766, 769, 775
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 834
PspEI	GGTNACC	2 cut(s)	9, 680
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 834
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	2 cut(s)	51, 694
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	575, 671
RsaNI	GTAC	2 cut(s)	574, 670
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	358, 420
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	9 cut(s)	148, 157, 358, 396, 417, 420, 813, 816, 853
Sau3AI	GATC	3 cut(s)	190, 493, 663
Sau96I	GGNCC	2 cut(s)	51, 694
SchI	GAGTC	4 cut(s)	727, 766, 770, 775
ScrFI	CCNGG	2 cut(s)	291, 836
SduI	GDGCHC	2 cut(s)	231, 881
SfaNI	GCATC	3 cut(s)	99, 134, 749
SfcI	CTRYAG	2 cut(s)	157, 892
Sfr303I	CCGCGG	2 cut(s)	358, 420
SgrBI	CCGCGG	2 cut(s)	358, 420
SinI	GGWCC	2 cut(s)	51, 694
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	205, 477, 592, 607, 702, 913
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	289, 834
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	4 cut(s)	78, 363, 471, 524
TasI	AATT	6 cut(s)	205, 477, 592, 607, 702, 913
TatI	WGTACW	2 cut(s)	573, 669
TauI	GCSGC	7 cut(s)	150, 360, 398, 419, 422, 815, 818
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	2 cut(s)	625, 881
TseFI	GTSAC	3 cut(s)	9, 409, 680
TseI	GCWGC	2 cut(s)	156, 852
Tsp45I	GTSAC	3 cut(s)	9, 409, 680
TspDTI	ATGAA	2 cut(s)	321, 906
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	625, 881
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	51, 694
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 913
XceI	RCATGY	1 cut(s)	864
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.