Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Forward (+)

15924098 .. 15925446

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACGAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACTGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCCCTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAGAGAAAGCTCCTCACCCGCGGCCTCGACCCTCAAACCCACCGCCCCCTGAAGGAGGCTGCCACCGCCACCGCCACCGCCACCGCCGCGGCAACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCGTTTTTGTCAGTCGAGAAAATTAACAGCTTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGACCAACAACAATAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACACCAGCAACAACAACAACAATAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAACAACCGAGGAAGACCAACAACAGCAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAGCCGTTTCAGTCCGAGCCGACTCGCGCATCCTCCGGGAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATTACGATATGTTTGCTCAGGCGGCGGCGGTGTGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAACGGCTTCTACAGATTTCAGAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

310

Amino Acids

35.07

Weight (kDa)

8.73

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	357, 425, 750
AclWI	GGATC	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	205, 925
AcuI	CTGAAG	2 cut(s)	234, 407
AfaI	GTAC	2 cut(s)	581, 683
AfiI	CCNNNNNNNGG	4 cut(s)	277, 388, 391, 703
AgsI	TTSAA	4 cut(s)	514, 559, 714, 925
AjnI	CCWGG	2 cut(s)	289, 846
AluBI	AGCT	8 cut(s)	29, 131, 156, 229, 241, 249, 346, 492
AluI	AGCT	8 cut(s)	29, 131, 156, 229, 241, 249, 346, 492
Alw21I	GWGCWC	2 cut(s)	231, 893
Alw26I	GTCTC	2 cut(s)	462, 910
Alw44I	GTGCAC	1 cut(s)	889
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	1 cut(s)	358
ApaLI	GTGCAC	1 cut(s)	889
ApeKI	GCWGC	3 cut(s)	156, 395, 864
ApoI	RAATTY	2 cut(s)	205, 925
AspLEI	GCGC	2 cut(s)	114, 752
AspS9I	GGNCC	3 cut(s)	51, 267, 706
AsuC2I	CCSGG	1 cut(s)	760
AsuHPI	GGTGA	3 cut(s)	3, 343, 704
AvaII	GGWCC	3 cut(s)	51, 267, 706
BaeGI	GKGCMC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	69, 228, 657
Bbv12I	GWGCWC	2 cut(s)	231, 893
BbvI	GCAGC	3 cut(s)	143, 382, 876
BceAI	ACGGC	2 cut(s)	712, 913
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	2 cut(s)	291, 848
BcnI	CCSGG	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	462, 910
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	157, 904
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	9 cut(s)	148, 157, 358, 396, 423, 426, 825, 828, 865
BlsI	GCNGC	9 cut(s)	149, 158, 359, 397, 424, 427, 826, 829, 866
Bme1390I	CCNGG	3 cut(s)	291, 760, 848
Bme18I	GGWCC	3 cut(s)	51, 267, 706
BmgT120I	GGNCC	3 cut(s)	51, 267, 706
BmiI	GGNNCC	2 cut(s)	269, 726
BmrFI	CCNGG	3 cut(s)	291, 760, 848
BmsI	GCATC	3 cut(s)	99, 134, 761
BpiI	GAAGAC	3 cut(s)	69, 228, 657
BpmI	CTGGAG	1 cut(s)	743
Bpu10I	CCTNAGC	2 cut(s)	164, 819
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	760
BsaI	GGTCTC	2 cut(s)	462, 910
BsaJI	CCNNGG	4 cut(s)	94, 355, 423, 645
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 388, 391, 703
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 848
BseDI	CCNNGG	4 cut(s)	94, 355, 423, 645
BseGI	GGATG	3 cut(s)	84, 90, 752
BseLI	CCNNNNNNNGG	4 cut(s)	277, 388, 391, 703
BseMII	CTCAG	3 cut(s)	178, 800, 833
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	338, 590
BseSI	GKGCMC	1 cut(s)	893
BseXI	GCAGC	3 cut(s)	143, 382, 876
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	3 cut(s)	357, 425, 750
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	231, 893
BsiSI	CCGG	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	4 cut(s)	277, 388, 391, 703
BsmAI	GTCTC	2 cut(s)	462, 910
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	2 cut(s)	462, 910
Bsp1286I	GDGCHC	2 cut(s)	231, 893
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	190, 499, 675
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	177, 799, 832
BspFNI	CGCG	3 cut(s)	357, 425, 750
BspLI	GGNNCC	2 cut(s)	269, 726
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	507
BspTNI	GGTCTC	2 cut(s)	462, 910
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	94, 355, 423, 645
BssMI	GATC	3 cut(s)	190, 499, 675
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 848
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	2 cut(s)	567, 606
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	110, 161
BstDEI	CTNAG	4 cut(s)	140, 164, 786, 819
BstDSI	CCRYGG	3 cut(s)	94, 355, 423
BstEII	GGTNACC	2 cut(s)	9, 692
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	84, 90, 752
BstFNI	CGCG	3 cut(s)	357, 425, 750
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 752
BstKTI	GATC	3 cut(s)	193, 502, 678
BstMAI	GTCTC	2 cut(s)	462, 910
BstMBI	GATC	3 cut(s)	190, 499, 675
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 422, 824, 897
BstNI	CCWGG	2 cut(s)	291, 848
BstNSI	RCATGY	1 cut(s)	876
BstPI	GGTNACC	2 cut(s)	9, 692
BstSCI	CCNGG	3 cut(s)	289, 758, 846
BstSFI	CTRYAG	2 cut(s)	157, 904
BstSLI	GKGCMC	1 cut(s)	893
BstUI	CGCG	3 cut(s)	357, 425, 750
BstV1I	GCAGC	3 cut(s)	143, 382, 876
BstV2I	GAAGAC	3 cut(s)	69, 228, 657
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	3 cut(s)	94, 355, 423
BtsCI	GGATG	3 cut(s)	84, 90, 752
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	3 cut(s)	210, 637, 893
Cac8I	GCNNGC	2 cut(s)	110, 161
CfoI	GCGC	2 cut(s)	114, 752
Cfr13I	GGNCC	3 cut(s)	51, 267, 706
Cfr42I	CCGCGG	2 cut(s)	358, 426
Csp6I	GTAC	2 cut(s)	580, 682
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	3 cut(s)	95, 679, 873
CviQI	GTAC	2 cut(s)	580, 682
DdeI	CTNAG	4 cut(s)	140, 164, 786, 819
DpnI	GATC	3 cut(s)	192, 501, 677
DpnII	GATC	3 cut(s)	190, 499, 675
Eam1104I	CTCTTC	2 cut(s)	567, 606
EarI	CTCTTC	2 cut(s)	567, 606
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	462, 910
Eco47I	GGWCC	3 cut(s)	51, 267, 706
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	234, 407
Eco91I	GGTNACC	2 cut(s)	9, 692
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO65I	GGTNACC	2 cut(s)	9, 692
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	2 cut(s)	289, 846
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	98, 682, 876
FaiI	YATR	6 cut(s)	96, 246, 680, 812, 874, 931
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	94, 678, 872
FauI	CCCGC	2 cut(s)	271, 362
Fnu4HI	GCNGC	9 cut(s)	148, 157, 358, 396, 423, 426, 825, 828, 865
FokI	GGATG	3 cut(s)	71, 77, 739
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	9 cut(s)	148, 157, 358, 396, 423, 426, 825, 828, 865
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	113, 751
GluI	GCNGC	9 cut(s)	148, 157, 358, 396, 423, 426, 825, 828, 865
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	759
HhaI	GCGC	2 cut(s)	114, 752
Hin1II	CATG	3 cut(s)	98, 682, 876
Hin6I	GCGC	2 cut(s)	112, 750
HinP1I	GCGC	2 cut(s)	112, 750
HinfI	GANTC	4 cut(s)	745, 773, 784, 793
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	3 cut(s)	3, 343, 704
Hpy166II	GTNNAC	3 cut(s)	287, 582, 891
Hpy188I	TCNGA	6 cut(s)	185, 257, 449, 739, 861, 915
Hpy188III	TCNNGA	3 cut(s)	337, 478, 514
Hpy8I	GTNNAC	3 cut(s)	287, 582, 891
HpyAV	CCTTC	3 cut(s)	95, 382, 562
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	3 cut(s)	159, 624, 891
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 422, 824, 897
HpyF3I	CTNAG	4 cut(s)	140, 164, 786, 819
Hsp92II	CATG	3 cut(s)	98, 682, 876
HspAI	GCGC	2 cut(s)	112, 750
KspI	CCGCGG	2 cut(s)	358, 426
Kzo9I	GATC	3 cut(s)	190, 499, 675
LmnI	GCTCC	4 cut(s)	119, 246, 351, 724
Lsp1109I	GCAGC	3 cut(s)	143, 382, 876
LweI	GCATC	3 cut(s)	99, 134, 761
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	9, 692
MalI	GATC	3 cut(s)	192, 501, 677
MboI	GATC	3 cut(s)	190, 499, 675
MboII	GAAGA	8 cut(s)	71, 74, 227, 230, 233, 584, 623, 662
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	231, 893
MluCI	AATT	7 cut(s)	205, 483, 604, 619, 714, 802, 925
MlyI	GAGTC	4 cut(s)	739, 778, 782, 787
MmeI	TCCRAC	1 cut(s)	208
MseI	TTAA	2 cut(s)	486, 494
MspA1I	CMGCKG	3 cut(s)	357, 425, 790
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	3 cut(s)	291, 760, 848
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	291, 848
MvnI	CGCG	3 cut(s)	357, 425, 750
MwoI	GCNNNNNNNGC	8 cut(s)	96, 105, 153, 156, 401, 422, 824, 897
NciI	CCSGG	1 cut(s)	760
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	190, 499, 675
NlaIII	CATG	3 cut(s)	98, 682, 876
NlaIV	GGNNCC	2 cut(s)	269, 726
NmeAIII	GCCGAG	2 cut(s)	415, 796
NmuCI	GTSAC	2 cut(s)	9, 692
NspI	RCATGY	1 cut(s)	876
PfoI	TCCNGGA	1 cut(s)	758
PkrI	GCNGC	9 cut(s)	149, 158, 359, 397, 424, 427, 826, 829, 866
PleI	GAGTC	4 cut(s)	739, 778, 781, 787
PpsI	GAGTC	4 cut(s)	739, 778, 781, 787
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 846
PspEI	GGTNACC	2 cut(s)	9, 692
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 846
PspN4I	GGNNCC	2 cut(s)	269, 726
PspPI	GGNCC	3 cut(s)	51, 267, 706
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	581, 683
RsaNI	GTAC	2 cut(s)	580, 682
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	358, 426
SaqAI	TTAA	2 cut(s)	486, 494
SatI	GCNGC	9 cut(s)	148, 157, 358, 396, 423, 426, 825, 828, 865
Sau3AI	GATC	3 cut(s)	190, 499, 675
Sau96I	GGNCC	3 cut(s)	51, 267, 706
SchI	GAGTC	4 cut(s)	739, 778, 782, 787
ScrFI	CCNGG	3 cut(s)	291, 760, 848
SduI	GDGCHC	2 cut(s)	231, 893
SfaNI	GCATC	3 cut(s)	99, 134, 761
SfcI	CTRYAG	2 cut(s)	157, 904
Sfr303I	CCGCGG	2 cut(s)	358, 426
SgrBI	CCGCGG	2 cut(s)	358, 426
SinI	GGWCC	3 cut(s)	51, 267, 706
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	7 cut(s)	205, 483, 604, 619, 714, 802, 925
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	289, 758, 846
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	78, 363, 477, 530
TasI	AATT	7 cut(s)	205, 483, 604, 619, 714, 802, 925
TatI	WGTACW	2 cut(s)	579, 681
TauI	GCSGC	6 cut(s)	150, 360, 425, 428, 827, 830
Tru1I	TTAA	2 cut(s)	486, 494
Tru9I	TTAA	2 cut(s)	486, 494
TscAI	CASTG	3 cut(s)	217, 637, 893
TseFI	GTSAC	2 cut(s)	9, 692
TseI	GCWGC	3 cut(s)	156, 395, 864
Tsp45I	GTSAC	2 cut(s)	9, 692
TspDTI	ATGAA	2 cut(s)	321, 918
TspRI	CASTG	3 cut(s)	217, 637, 893
VneI	GTGCAC	1 cut(s)	889
VpaK11BI	GGWCC	3 cut(s)	51, 267, 706
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 925
XceI	RCATGY	1 cut(s)	876
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.