Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

45091867 .. 45094222

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G551400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGCGCTTGGACCAAAGAAGAAGACCAGCGCCTCATCGATTACATCCGCGTCCATGGCGAAGGCTGCTGGCGCTCCCTCCCCAAAGCCGCTGGGTTGCTTAGGTGCGGCAAGAGCTGTAGGCTGAGATGGATAAACTACCTTCGCCCTGACCTCAAGCGTGGAAATTTCACAGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGCTTACTTGGAAACAAGTGGTCATTGATTGCGGGGCGATTGCCGGGAAGAACCGACAACGAAATAAAAAACTACTGGAACACACACATCAAGCGGAAGCTCATCAGCCGTGGCCTCGACCCTCAAACCCACCGTCCGCTCAACGACACCACAACCGCAGCGGCGGCAGCGGCCGCCACGACACCTGCTTCTCGCTTAGATTTCAGAAACATTTCTCCGCCATCCGCCGTCGTCGATAAAACCACCAACAAAAATTCCATATTGCATCACAAAACCATCAACAAAACCTCCTCGAACAACAACAACCACAACAGCAATATTGTATTGTTCAAGCCCAAGATGGAAGAGGACAACATAGAAGAGGCCAGCAGTGGGACCACCACAGAGGAAGACCAACAACAACAACAACAGCAACAGCAGAAATTGCAAGATCATTATATGTACAAGTGTAGTGACCTCAACTTGGATCTTTCAATTGGGCTGGAGCCCTTCCAGTCCGAGCCAACTCGGGCTTCGTCAGGGAACTCGGCCGAGTCAAGACTGCAGCAGAATAATTACCAGGTTTTTGGGACAGTGCATAAGGCGGGGGTGACTCAGGCGGTGTGTTTGTGTTGTCAGGTTGGATTCCAGAGCAGCGAGGCTTGTAGGAATTGTCAGTGCACAAATGGGTTCTACAGATTTCACAGACCTTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

316

Amino Acids

35.6

Weight (kDa)

8.87

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	385
AccII	CGCG	1 cut(s)	90
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	2 cut(s)	417, 774
AcsI	RAATTY	3 cut(s)	205, 499, 940
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	618, 709
AgsI	TTSAA	3 cut(s)	577, 720, 940
AjnI	CCWGG	1 cut(s)	804
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	6 cut(s)	29, 156, 229, 241, 249, 346
AluI	AGCT	6 cut(s)	29, 156, 229, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	231, 908
Alw44I	GTGCAC	1 cut(s)	904
AlwI	GGATC	1 cut(s)	720
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	4 cut(s)	358, 417, 609, 774
ApaLI	GTGCAC	1 cut(s)	904
ApeKI	GCWGC	5 cut(s)	105, 404, 413, 790, 879
ApoI	RAATTY	3 cut(s)	205, 499, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	3 cut(s)	47, 72, 114
AspS9I	GGNCC	2 cut(s)	51, 621
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	3, 847
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	2 cut(s)	51, 621
BaeGI	GKGCMC	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	231, 735
BbsI	GAAGAC	2 cut(s)	69, 642
Bbv12I	GWGCWC	2 cut(s)	231, 908
BbvI	GCAGC	5 cut(s)	92, 416, 425, 802, 891
BccI	CCATC	4 cut(s)	162, 475, 530, 580
BceAI	ACGGC	2 cut(s)	339, 458
BciT130I	CCWGG	1 cut(s)	806
BcnI	CCSGG	1 cut(s)	291
BfmI	CTRYAG	3 cut(s)	157, 788, 919
BfoI	RGCGCY	3 cut(s)	48, 73, 115
BfuAI	ACCTGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	291, 806
Bme18I	GGWCC	2 cut(s)	51, 621
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	51, 621
BmiI	GGNNCC	2 cut(s)	622, 732
BmrFI	CCNGG	2 cut(s)	291, 806
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	69, 642
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	94, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	618, 709
Bse1I	ACTGG	2 cut(s)	326, 739
BseBI	CCWGG	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	94, 355
BseGI	GGATG	2 cut(s)	84, 467
BseLI	CCNNNNNNNGG	2 cut(s)	618, 709
BseMII	CTCAG	2 cut(s)	155, 854
BseNI	ACTGG	2 cut(s)	326, 739
BseRI	GAGGAG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	908
BseX3I	CGGCCG	2 cut(s)	417, 774
BseXI	GCAGC	5 cut(s)	92, 416, 425, 802, 891
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	420, 777
BshFI	GGCC	4 cut(s)	360, 419, 611, 776
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	2 cut(s)	420, 777
BsiHKAI	GWGCWC	2 cut(s)	231, 908
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	634, 829
BslI	CCNNNNNNNGG	2 cut(s)	618, 709
BsmFI	GGGAC	2 cut(s)	634, 829
BsnI	GGCC	4 cut(s)	360, 419, 611, 776
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	3 cut(s)	231, 735, 908
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	676, 712
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	4 cut(s)	360, 419, 611, 776
BspCNI	CTCAG	2 cut(s)	156, 853
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	622, 732
BspMAI	CTGCAG	1 cut(s)	792
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	720
BsrBI	CCGCTC	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	326, 739
BssECI	CCNNGG	2 cut(s)	94, 355
BssMI	GATC	2 cut(s)	676, 712
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	2 cut(s)	380, 820
Bst6I	CTCTTC	2 cut(s)	585, 600
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	110, 613
BstDEI	CTNAG	4 cut(s)	140, 164, 442, 840
BstDSI	CCRYGG	2 cut(s)	94, 355
BstEII	GGTNACC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	84, 467
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	3 cut(s)	48, 73, 115
BstHHI	GCGC	3 cut(s)	47, 72, 114
BstKTI	GATC	2 cut(s)	679, 715
BstMBI	GATC	2 cut(s)	676, 712
BstMCI	CGRYCG	2 cut(s)	420, 777
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 105, 111, 153, 410, 413, 416, 419, 670
BstNI	CCWGG	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	289, 804
BstSFI	CTRYAG	3 cut(s)	157, 788, 919
BstSLI	GKGCMC	1 cut(s)	908
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	92, 416, 425, 802, 891
BstV2I	GAAGAC	2 cut(s)	69, 642
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	2 cut(s)	417, 774
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	360, 419, 611, 776
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	2 cut(s)	94, 355
BtsCI	GGATG	2 cut(s)	84, 467
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	3 cut(s)	622, 825, 908
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	110, 613
CciNI	GCGGCCGC	1 cut(s)	417
CfoI	GCGC	3 cut(s)	47, 72, 114
Cfr13I	GGNCC	2 cut(s)	51, 621
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	804
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	4 cut(s)	140, 164, 442, 840
DpnI	GATC	2 cut(s)	678, 714
DpnII	GATC	2 cut(s)	676, 712
EaeI	YGGCCR	2 cut(s)	417, 774
EagI	CGGCCG	2 cut(s)	417, 774
Eam1104I	CTCTTC	2 cut(s)	585, 600
EarI	CTCTTC	2 cut(s)	585, 600
EciI	GGCGGA	2 cut(s)	453, 460
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	2 cut(s)	417, 774
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	231, 735
Eco47I	GGWCC	2 cut(s)	51, 621
Eco52I	CGGCCG	2 cut(s)	417, 774
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	753
Eco91I	GGTNACC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	231, 735
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	98
FaiI	YATR	8 cut(s)	96, 246, 506, 602, 684, 686, 825, 946
FaqI	GGGAC	2 cut(s)	634, 829
FatI	CATG	1 cut(s)	94
FauI	CCCGC	2 cut(s)	271, 823
FokI	GGATG	2 cut(s)	71, 454
FriOI	GRGCYC	2 cut(s)	231, 735
GlaI	GCGC	3 cut(s)	46, 71, 113
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	749
HaeII	RGCGCY	3 cut(s)	48, 73, 115
HaeIII	GGCC	4 cut(s)	360, 419, 611, 776
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	3 cut(s)	47, 72, 114
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	3 cut(s)	45, 70, 112
HinP1I	GCGC	3 cut(s)	45, 70, 112
HinfI	GANTC	3 cut(s)	779, 838, 870
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	3, 847
Hpy166II	GTNNAC	1 cut(s)	906
Hpy188I	TCNGA	2 cut(s)	452, 745
Hpy188III	TCNNGA	2 cut(s)	783, 874
Hpy8I	GTNNAC	1 cut(s)	906
Hpy99I	CGWCG	2 cut(s)	479, 482
HpyAV	CCTTC	3 cut(s)	95, 191, 745
HpyCH4III	ACNGT	2 cut(s)	380, 820
HpyCH4V	TGCA	5 cut(s)	511, 673, 790, 823, 906
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 105, 111, 153, 410, 413, 416, 419, 670
HpyF3I	CTNAG	4 cut(s)	140, 164, 442, 840
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	3 cut(s)	45, 70, 112
Kzo9I	GATC	2 cut(s)	676, 712
LmnI	GCTCC	3 cut(s)	119, 246, 730
Lsp1109I	GCAGC	5 cut(s)	92, 416, 425, 802, 891
LweI	GCATC	1 cut(s)	520
MabI	ACCWGGT	1 cut(s)	804
MaeIII	GTNAC	3 cut(s)	9, 698, 835
MalI	GATC	2 cut(s)	678, 714
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	2 cut(s)	676, 712
MboII	GAAGA	9 cut(s)	71, 74, 227, 230, 233, 306, 602, 617, 647
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	3 cut(s)	231, 735, 908
MluCI	AATT	7 cut(s)	205, 499, 668, 720, 799, 895, 940
MlyI	GAGTC	2 cut(s)	788, 832
MmeI	TCCRAC	1 cut(s)	847
MroXI	GAANNNNTTC	1 cut(s)	457
MspA1I	CMGCKG	3 cut(s)	131, 407, 416
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	291, 806
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	9 cut(s)	96, 105, 111, 153, 410, 413, 416, 419, 670
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	676, 712
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	622, 732
NmeAIII	GCCGAG	2 cut(s)	752, 802
NmuCI	GTSAC	3 cut(s)	9, 698, 835
NotI	GCGGCCGC	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	870
PleI	GAGTC	2 cut(s)	787, 832
PpsI	GAGTC	2 cut(s)	787, 832
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	804
PspEI	GGTNACC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	622, 732
PspPI	GGNCC	2 cut(s)	51, 621
PstI	CTGCAG	1 cut(s)	792
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SacI	GAGCTC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	676, 712
Sau96I	GGNCC	2 cut(s)	51, 621
SchI	GAGTC	2 cut(s)	788, 832
ScrFI	CCNGG	2 cut(s)	291, 806
SduI	GDGCHC	3 cut(s)	231, 735, 908
SexAI	ACCWGGT	1 cut(s)	804
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	3 cut(s)	157, 788, 919
SinI	GGWCC	2 cut(s)	51, 621
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	7 cut(s)	205, 499, 668, 720, 799, 895, 940
SspI	AATATT	1 cut(s)	565
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	289, 804
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	380, 820
TaqI	TCGA	4 cut(s)	78, 363, 480, 539
TasI	AATT	7 cut(s)	205, 499, 668, 720, 799, 895, 940
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	6 cut(s)	131, 150, 410, 413, 419, 422
TfiI	GAWTC	1 cut(s)	870
TscAI	CASTG	3 cut(s)	622, 825, 908
TseFI	GTSAC	3 cut(s)	9, 698, 835
TseI	GCWGC	5 cut(s)	105, 404, 413, 790, 879
Tsp45I	GTSAC	3 cut(s)	9, 698, 835
TspDTI	ATGAA	1 cut(s)	933
TspRI	CASTG	3 cut(s)	622, 825, 908
VneI	GTGCAC	1 cut(s)	904
VpaK11BI	GGWCC	2 cut(s)	51, 621
XapI	RAATTY	3 cut(s)	205, 499, 940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.