Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Reverse (-)

53271076 .. 53272198

Gene Structure 1123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAATGGTCTCTGATTGCGGGGCGTTTACCTGGACGAACCGACAATGAAATCAAAAACTACTGGAACACCCACATCAAAAGAAAGCTCCTCACCCGCGGTCTCGACCCTCAAACCCACCGCCCCCTGAACGAGGCCCCGGCCACCGCCACCGCCACCGCCGCGGCAACTTCTCGGCTAGATTTCAGAAACGGGTCTCCACCGTTTTTGTCAGTCGAGAAAATTAACAGCCTAATGGATCAAACCAACTTCAAGAACAACACCAACTCGACCAATAACAAGAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAACAATAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAACAACCGAGGAAGACCAACAACCACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAACCGTTTCAGTCCGAGCCGACTCGGGCATCCTCCGGGAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATCACGACATGTTTGCACAGGCGGCGGCGGTATGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

306

Amino Acids

34.64

Weight (kDa)

8.74

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	9.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.9e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	357, 422
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	205, 913
AfaI	GTAC	2 cut(s)	578, 671
AfiI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	4 cut(s)	511, 556, 702, 913
AjnI	CCWGG	2 cut(s)	289, 834
AluBI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
AluI	AGCT	7 cut(s)	29, 131, 156, 229, 241, 249, 346
Alw21I	GWGCWC	2 cut(s)	231, 881
Alw26I	GTCTC	3 cut(s)	273, 365, 459
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	2 cut(s)	393, 399
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	2 cut(s)	156, 852
ApoI	RAATTY	2 cut(s)	205, 913
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	51, 394, 694
AsuC2I	CCSGG	2 cut(s)	398, 748
AsuHPI	GGTGA	4 cut(s)	3, 202, 343, 692
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	2 cut(s)	51, 694
BaeGI	GKGCMC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	69, 228, 645
Bbv12I	GWGCWC	2 cut(s)	231, 881
BbvI	GCAGC	2 cut(s)	143, 864
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	2 cut(s)	291, 836
BcnI	CCSGG	2 cut(s)	398, 748
BcoDI	GTCTC	3 cut(s)	273, 365, 459
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	157, 892
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	7 cut(s)	148, 157, 420, 423, 813, 816, 853
BlsI	GCNGC	7 cut(s)	149, 158, 421, 424, 814, 817, 854
Bme1390I	CCNGG	4 cut(s)	291, 398, 748, 836
Bme18I	GGWCC	2 cut(s)	51, 694
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	3 cut(s)	51, 394, 694
BmiI	GGNNCC	2 cut(s)	396, 714
BmrFI	CCNGG	4 cut(s)	291, 398, 748, 836
BmsI	GCATC	3 cut(s)	99, 134, 749
BpiI	GAAGAC	3 cut(s)	69, 228, 645
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	398, 748
BsaI	GGTCTC	3 cut(s)	273, 365, 459
BsaJI	CCNNGG	5 cut(s)	94, 355, 396, 420, 633
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 391, 691
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	291, 836
BseDI	CCNNGG	5 cut(s)	94, 355, 396, 420, 633
BseGI	GGATG	3 cut(s)	84, 90, 740
BseLI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
BseMII	CTCAG	2 cut(s)	178, 788
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	338, 587
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	2 cut(s)	143, 864
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	357, 422
BshFI	GGCC	2 cut(s)	395, 401
BsiHKAI	GWGCWC	2 cut(s)	231, 881
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	2 cut(s)	398, 747
BslI	CCNNNNNNNGG	3 cut(s)	42, 391, 691
BsmAI	GTCTC	3 cut(s)	273, 365, 459
BsnI	GGCC	2 cut(s)	395, 401
Bso31I	GGTCTC	3 cut(s)	273, 365, 459
BsoBI	CYCGRG	1 cut(s)	735
Bsp1286I	GDGCHC	2 cut(s)	231, 881
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	190, 496, 663
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	395, 401
BspCNI	CTCAG	2 cut(s)	177, 787
BspFNI	CGCG	2 cut(s)	357, 422
BspLI	GGNNCC	2 cut(s)	396, 714
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	504
BspTNI	GGTCTC	3 cut(s)	273, 365, 459
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	5 cut(s)	94, 355, 396, 420, 633
BssMI	GATC	3 cut(s)	190, 496, 663
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	291, 836
Bst4CI	ACNGT	2 cut(s)	462, 717
Bst6I	CTCTTC	2 cut(s)	564, 594
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	110, 161
BstDEI	CTNAG	3 cut(s)	140, 164, 774
BstDSI	CCRYGG	3 cut(s)	94, 355, 420
BstEII	GGTNACC	2 cut(s)	9, 680
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	84, 90, 740
BstFNI	CGCG	2 cut(s)	357, 422
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	193, 499, 666
BstMAI	GTCTC	3 cut(s)	273, 365, 459
BstMBI	GATC	3 cut(s)	190, 496, 663
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 419, 812, 885
BstNI	CCWGG	2 cut(s)	291, 836
BstNSI	RCATGY	2 cut(s)	802, 864
BstPI	GGTNACC	2 cut(s)	9, 680
BstSCI	CCNGG	4 cut(s)	289, 396, 746, 834
BstSFI	CTRYAG	2 cut(s)	157, 892
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	2 cut(s)	357, 422
BstV1I	GCAGC	2 cut(s)	143, 864
BstV2I	GAAGAC	3 cut(s)	69, 228, 645
BsuRI	GGCC	2 cut(s)	395, 401
BtgI	CCRYGG	3 cut(s)	94, 355, 420
BtsCI	GGATG	3 cut(s)	84, 90, 740
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	625, 881
Cac8I	GCNNGC	2 cut(s)	110, 161
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	51, 394, 694
Cfr42I	CCGCGG	2 cut(s)	358, 423
Csp6I	GTAC	2 cut(s)	577, 670
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	4 cut(s)	95, 667, 799, 861
CviQI	GTAC	2 cut(s)	577, 670
DdeI	CTNAG	3 cut(s)	140, 164, 774
DpnI	GATC	3 cut(s)	192, 498, 665
DpnII	GATC	3 cut(s)	190, 496, 663
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	564, 594
EarI	CTCTTC	2 cut(s)	564, 594
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	3 cut(s)	273, 365, 459
Eco47I	GGWCC	2 cut(s)	51, 694
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	735
Eco91I	GGTNACC	2 cut(s)	9, 680
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	394
EcoO65I	GGTNACC	2 cut(s)	9, 680
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	289, 834
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	98, 670, 802, 864
FaiI	YATR	7 cut(s)	96, 246, 668, 800, 823, 862, 919
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	4 cut(s)	94, 666, 798, 860
FauI	CCCGC	2 cut(s)	271, 362
Fnu4HI	GCNGC	7 cut(s)	148, 157, 420, 423, 813, 816, 853
FokI	GGATG	3 cut(s)	71, 77, 727
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	7 cut(s)	148, 157, 420, 423, 813, 816, 853
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	7 cut(s)	148, 157, 420, 423, 813, 816, 853
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	395, 401
HapII	CCGG	2 cut(s)	398, 747
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	98, 670, 802, 864
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	733, 761, 772, 781
HpaII	CCGG	2 cut(s)	398, 747
HphI	GGTGA	4 cut(s)	3, 202, 343, 692
Hpy166II	GTNNAC	2 cut(s)	287, 879
Hpy188I	TCNGA	6 cut(s)	185, 257, 273, 446, 727, 849
Hpy188III	TCNNGA	4 cut(s)	362, 475, 511, 794
Hpy8I	GTNNAC	2 cut(s)	287, 879
HpyAV	CCTTC	2 cut(s)	95, 559
HpyCH4III	ACNGT	2 cut(s)	462, 717
HpyCH4V	TGCA	4 cut(s)	159, 612, 806, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 419, 812, 885
HpyF3I	CTNAG	3 cut(s)	140, 164, 774
Hsp92II	CATG	4 cut(s)	98, 670, 802, 864
HspAI	GCGC	1 cut(s)	112
KspI	CCGCGG	2 cut(s)	358, 423
Kzo9I	GATC	3 cut(s)	190, 496, 663
LmnI	GCTCC	3 cut(s)	119, 246, 351
Lsp1109I	GCAGC	2 cut(s)	143, 864
LweI	GCATC	3 cut(s)	99, 134, 749
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	9, 680
MalI	GATC	3 cut(s)	192, 498, 665
MboI	GATC	3 cut(s)	190, 496, 663
MboII	GAAGA	9 cut(s)	71, 74, 227, 230, 233, 553, 581, 611, 650
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	231, 881
MluCI	AATT	6 cut(s)	205, 480, 592, 607, 702, 913
MlyI	GAGTC	4 cut(s)	727, 766, 770, 775
MmeI	TCCRAC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	3 cut(s)	357, 422, 778
MspI	CCGG	2 cut(s)	398, 747
MspR9I	CCNGG	4 cut(s)	291, 398, 748, 836
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	291, 836
MvnI	CGCG	2 cut(s)	357, 422
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 153, 156, 419, 812, 885
NciI	CCSGG	2 cut(s)	398, 748
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	190, 496, 663
NlaIII	CATG	4 cut(s)	98, 670, 802, 864
NlaIV	GGNNCC	2 cut(s)	396, 714
NmeAIII	GCCGAG	2 cut(s)	412, 784
NmuCI	GTSAC	2 cut(s)	9, 680
NspI	RCATGY	2 cut(s)	802, 864
PciI	ACATGT	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	746
PkrI	GCNGC	7 cut(s)	149, 158, 421, 424, 814, 817, 854
PleI	GAGTC	4 cut(s)	727, 766, 769, 775
PpsI	GAGTC	4 cut(s)	727, 766, 769, 775
PscI	ACATGT	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 834
PspEI	GGTNACC	2 cut(s)	9, 680
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 834
PspN4I	GGNNCC	2 cut(s)	396, 714
PspPI	GGNCC	3 cut(s)	51, 394, 694
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	578, 671
RsaNI	GTAC	2 cut(s)	577, 670
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	2 cut(s)	358, 423
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	7 cut(s)	148, 157, 420, 423, 813, 816, 853
Sau3AI	GATC	3 cut(s)	190, 496, 663
Sau96I	GGNCC	3 cut(s)	51, 394, 694
SchI	GAGTC	4 cut(s)	727, 766, 770, 775
ScrFI	CCNGG	4 cut(s)	291, 398, 748, 836
SduI	GDGCHC	2 cut(s)	231, 881
SfaNI	GCATC	3 cut(s)	99, 134, 749
SfcI	CTRYAG	2 cut(s)	157, 892
Sfr303I	CCGCGG	2 cut(s)	358, 423
SgrBI	CCGCGG	2 cut(s)	358, 423
SinI	GGWCC	2 cut(s)	51, 694
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	205, 480, 592, 607, 702, 913
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	289, 396, 746, 834
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	462, 717
TaqI	TCGA	4 cut(s)	78, 363, 474, 527
TasI	AATT	6 cut(s)	205, 480, 592, 607, 702, 913
TatI	WGTACW	2 cut(s)	576, 669
TauI	GCSGC	5 cut(s)	150, 422, 425, 815, 818
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	625, 881
TseFI	GTSAC	2 cut(s)	9, 680
TseI	GCWGC	2 cut(s)	156, 852
Tsp45I	GTSAC	2 cut(s)	9, 680
TspDTI	ATGAA	2 cut(s)	321, 906
TspRI	CASTG	2 cut(s)	625, 881
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	51, 694
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	205, 913
XceI	RCATGY	2 cut(s)	802, 864
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.