Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Forward (+)

51057132 .. 51058718

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1411200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGAGAGCACCTTGTTGTGAGAAAGCTCATACCAACAAAGGGGCATGGACGAAGGAGGAGGACCAGCGCCTCATCGACCACATCCGCCAGCACGGCGAGGGCTGCTGGCGCTCCCTCCCTAAAGCCGCCGGGTTGCTCAGGTGCGGCAAGAGTTGCAGGTTGAGATGGATAAACTACCTCCGCCCTGACCTCAAGCGCGGCAATTTCACACAAGAAGAAGATGAACTCATCATCAAGCTTCATAGCTTGCTTGGAAACAAATGGTCATTGATTGCGGGCCGATTGCCGGGAAGAACCGACAACGAGATCAAAAACTACTGGAACACACACATCAAGCGAAAGCTCATCAGCCGCGGCCTCGACCCTCAAACCCACCGCCCGCTTAACCAAACCACAACCGCCGCTGCTGCCGCCACGCCCGCCTCTCGCTTGGACCTGAGAAATCGTTCTTCGCCGTCGTCCGCGGTATTTGATCACAAAACCATCAAAAACAACAAATTTGAATTGTTGAAGCACCCCAAGATGGAGCATGAGTACTACAATTACAATATAGAATCGGAGGCCAATTGCAGCACCACTACCGGCAGCGGCACCACAACCGATGAAGACCAAAAACAACAGAACAAGTACAAGTGTTCTGATCTCAACTTGGATCTTTCAATTGGGCTAGAGCCGTTTCAGTCCGAGCCAACTCGGGCATCGTCTGGGAACTCGGCCGAATCAAGACTGCAGCGGATCATAGCTCCTTCTAATAGTAATAATAATCATCAGTTTTTTGGGAAAGTGCAGTCGACTCAGGCGGTGGCGGTGGCTCAGGCGGTGTGTGTGTGCTGCCAGGTTGGATTTCAAAGCAGTGAGGCATGCAGCAATTGTCAGTGCACCAGTTACAATGGCTTCTACAGATTTCACAGACCTGCTTTGAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

311

Amino Acids

34.93

Weight (kDa)

9.14

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3.2e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	150, 925
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	3 cut(s)	201, 357, 467
AclWI	GGATC	2 cut(s)	663, 746
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	2 cut(s)	539, 632
AfiI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
AgsI	TTSAA	5 cut(s)	506, 514, 663, 851, 925
AjnI	CCWGG	1 cut(s)	837
AluBI	AGCT	5 cut(s)	29, 241, 249, 346, 746
AluI	AGCT	5 cut(s)	29, 241, 249, 346, 746
Alw21I	GWGCWC	2 cut(s)	13, 884
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	663, 746
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	4 cut(s)	280, 358, 564, 717
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	8 cut(s)	105, 407, 410, 573, 588, 733, 834, 867
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	3 cut(s)	72, 114, 201
AspS9I	GGNCC	3 cut(s)	64, 280, 436
AsuC2I	CCSGG	2 cut(s)	133, 291
AvaI	CYCGRG	1 cut(s)	696
AvaII	GGWCC	2 cut(s)	64, 436
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	2 cut(s)	13, 884
BbvI	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BccI	CCATC	3 cut(s)	162, 494, 520
BceAI	ACGGC	3 cut(s)	112, 442, 661
BciT130I	CCWGG	1 cut(s)	839
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	133, 291
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	2 cut(s)	731, 901
BfoI	RGCGCY	2 cut(s)	73, 115
BfuAI	ACCTGC	2 cut(s)	150, 925
BglI	GCCNNNNNGGC	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	3 cut(s)	133, 291, 839
Bme18I	GGWCC	2 cut(s)	64, 436
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	3 cut(s)	64, 280, 436
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	133, 291, 839
BmsI	GCATC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	615
Bpu10I	CCTNAGC	2 cut(s)	140, 816
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	133, 291
BsaJI	CCNNGG	2 cut(s)	355, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 289, 526
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	326, 885
BseBI	CCWGG	1 cut(s)	839
BseDI	CCNNGG	2 cut(s)	355, 465
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
BseMII	CTCAG	4 cut(s)	154, 431, 812, 830
BseNI	ACTGG	2 cut(s)	326, 885
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	884
BseX3I	CGGCCG	1 cut(s)	717
BseXI	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	3 cut(s)	201, 357, 467
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	282, 360, 566, 719
BshNI	GGYRCC	1 cut(s)	593
BsiEI	CGRYCG	1 cut(s)	720
BsiHKAI	GWGCWC	2 cut(s)	13, 884
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	132, 290, 585
BslI	CCNNNNNNNGG	3 cut(s)	42, 289, 526
BsnI	GGCC	4 cut(s)	282, 360, 566, 719
BsoBI	CYCGRG	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	13, 884
Bsp143I	GATC	5 cut(s)	309, 475, 643, 655, 738
BspANI	GGCC	4 cut(s)	282, 360, 566, 719
BspCNI	CTCAG	4 cut(s)	153, 432, 811, 829
BspFNI	CGCG	3 cut(s)	201, 357, 467
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	2 cut(s)	150, 925
BspPI	GGATC	2 cut(s)	663, 746
BspT107I	GGYRCC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	326, 885
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	355, 465
BssMI	GATC	5 cut(s)	309, 475, 643, 655, 738
Bst2UI	CCWGG	1 cut(s)	839
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	7 cut(s)	92, 110, 251, 280, 383, 423, 865
BstDEI	CTNAG	4 cut(s)	140, 440, 798, 816
BstDSI	CCRYGG	2 cut(s)	355, 465
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	3 cut(s)	201, 357, 467
BstH2I	RGCGCY	2 cut(s)	73, 115
BstHHI	GCGC	3 cut(s)	72, 114, 201
BstKTI	GATC	5 cut(s)	312, 478, 646, 658, 741
BstMBI	GATC	5 cut(s)	309, 475, 643, 655, 738
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 105, 111, 156, 410, 413, 422
BstNI	CCWGG	1 cut(s)	839
BstNSI	RCATGY	1 cut(s)	867
BstSCI	CCNGG	3 cut(s)	131, 289, 837
BstSFI	CTRYAG	2 cut(s)	731, 901
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	3 cut(s)	201, 357, 467
BstV1I	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BstZI	CGGCCG	1 cut(s)	717
BsuRI	GGCC	4 cut(s)	282, 360, 566, 719
BtgI	CCRYGG	2 cut(s)	355, 465
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	2 cut(s)	862, 884
BveI	ACCTGC	2 cut(s)	150, 925
Cac8I	GCNNGC	7 cut(s)	92, 110, 251, 280, 383, 423, 865
CfoI	GCGC	3 cut(s)	72, 114, 201
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	3 cut(s)	64, 280, 436
Cfr42I	CCGCGG	2 cut(s)	358, 468
Csp6I	GTAC	2 cut(s)	538, 631
CviAII	CATG	3 cut(s)	48, 533, 864
CviQI	GTAC	2 cut(s)	538, 631
DdeI	CTNAG	4 cut(s)	140, 440, 798, 816
DpnI	GATC	5 cut(s)	311, 477, 645, 657, 740
DpnII	GATC	5 cut(s)	309, 475, 643, 655, 738
EaeI	YGGCCR	1 cut(s)	717
EagI	CGGCCG	1 cut(s)	717
EciI	GGCGGA	2 cut(s)	77, 173
EclXI	CGGCCG	1 cut(s)	717
Eco47I	GGWCC	2 cut(s)	64, 436
Eco52I	CGGCCG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	837
FaeI	CATG	3 cut(s)	51, 536, 867
FaiI	YATR	8 cut(s)	33, 49, 246, 534, 554, 743, 865, 931
FatI	CATG	3 cut(s)	47, 532, 863
FauI	CCCGC	3 cut(s)	271, 390, 430
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	794
FokI	GGATG	1 cut(s)	71
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	3 cut(s)	71, 113, 200
HaeII	RGCGCY	2 cut(s)	73, 115
HaeIII	GGCC	4 cut(s)	282, 360, 566, 719
HapII	CCGG	3 cut(s)	132, 290, 585
HhaI	GCGC	3 cut(s)	72, 114, 201
Hin1II	CATG	3 cut(s)	51, 536, 867
Hin6I	GCGC	3 cut(s)	70, 112, 199
HinP1I	GCGC	3 cut(s)	70, 112, 199
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	4 cut(s)	557, 722, 796, 925
HpaII	CCGG	3 cut(s)	132, 290, 585
Hpy166II	GTNNAC	2 cut(s)	795, 882
Hpy188I	TCNGA	3 cut(s)	562, 643, 688
Hpy188III	TCNNGA	1 cut(s)	726
Hpy8I	GTNNAC	2 cut(s)	795, 882
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	49, 759
HpyCH4V	TGCA	6 cut(s)	159, 573, 733, 790, 867, 882
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 105, 111, 156, 410, 413, 422
HpyF3I	CTNAG	4 cut(s)	140, 440, 798, 816
Hsp92II	CATG	3 cut(s)	51, 536, 867
HspAI	GCGC	3 cut(s)	70, 112, 199
Ksp22I	TGATCA	1 cut(s)	475
KspI	CCGCGG	2 cut(s)	358, 468
Kzo9I	GATC	5 cut(s)	309, 475, 643, 655, 738
LmnI	GCTCC	3 cut(s)	119, 529, 751
Lsp1109I	GCAGC	8 cut(s)	92, 394, 397, 585, 600, 745, 821, 879
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	5 cut(s)	311, 477, 645, 657, 740
MboI	GATC	5 cut(s)	309, 475, 643, 655, 738
MboII	GAAGA	5 cut(s)	230, 233, 306, 444, 620
MfeI	CAATTG	3 cut(s)	568, 663, 871
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	13, 884
MluCI	AATT	7 cut(s)	205, 500, 506, 544, 568, 663, 871
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	5 cut(s)	357, 407, 467, 591, 736
MspI	CCGG	3 cut(s)	132, 290, 585
MspR9I	CCNGG	3 cut(s)	133, 291, 839
MunI	CAATTG	3 cut(s)	568, 663, 871
MvaI	CCWGG	1 cut(s)	839
MvnI	CGCG	3 cut(s)	201, 357, 467
MwoI	GCNNNNNNNGC	7 cut(s)	96, 105, 111, 156, 410, 413, 422
NciI	CCSGG	2 cut(s)	133, 291
NdeII	GATC	5 cut(s)	309, 475, 643, 655, 738
NlaIII	CATG	3 cut(s)	51, 536, 867
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	695
NspI	RCATGY	1 cut(s)	867
PaeI	GCATGC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	557, 722, 925
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	837
PspGI	CCWGG	1 cut(s)	837
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	3 cut(s)	64, 280, 436
PstI	CTGCAG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	2 cut(s)	539, 632
RsaNI	GTAC	2 cut(s)	538, 631
SacII	CCGCGG	2 cut(s)	358, 468
SalI	GTCGAC	1 cut(s)	793
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	309, 475, 643, 655, 738
Sau96I	GGNCC	3 cut(s)	64, 280, 436
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	3 cut(s)	133, 291, 839
SduI	GDGCHC	2 cut(s)	13, 884
SfaNI	GCATC	1 cut(s)	710
SfcI	CTRYAG	2 cut(s)	731, 901
Sfr303I	CCGCGG	2 cut(s)	358, 468
SgrBI	CCGCGG	2 cut(s)	358, 468
SinI	GGWCC	2 cut(s)	64, 436
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	867
Sse9I	AATT	7 cut(s)	205, 500, 506, 544, 568, 663, 871
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	3 cut(s)	131, 289, 837
TaqI	TCGA	3 cut(s)	78, 363, 794
TasI	AATT	7 cut(s)	205, 500, 506, 544, 568, 663, 871
TatI	WGTACW	2 cut(s)	537, 630
TauI	GCSGC	8 cut(s)	131, 150, 204, 357, 360, 407, 416, 594
TfiI	GAWTC	3 cut(s)	557, 722, 925
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	862, 884
TseI	GCWGC	8 cut(s)	105, 407, 410, 573, 588, 733, 834, 867
TspDTI	ATGAA	3 cut(s)	233, 240, 621
TspRI	CASTG	2 cut(s)	862, 884
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	64, 436
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	671
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.