FvH4_5g37320

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009961
Physical Location & Seq
Forward (+)
27440576 .. 27442511
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37320.t1

Sequence Viewer

Length: 336 bp
ATGGCCAACCACGCCGTTTTCAGGTCGTCTCTGGTTTGTTTAGCCCTAGTTGTAGTGGTGGTTGGGATTTGCACGCAGTCTTTCAGGAAGATGATGGTGACGTACCTGGTTGGTGTGGTCGGGATTGGGGGTGTGCTTTTGCCGGATTGGGCTTACTTTGACCGGGACTTTTCGCGGTGGGGTACTCCGGTTTCGGTTGAGGAAAGAGCCTCTGCGAATGCAACTGCTGAAAGATCTGGATTTGCAAGATTGAAAAGGTATCCTATGCGATTGGCTGCTTATGCCACAATTTATGGATTTGCTCTGTACAACTGGTGGGGGTTTGTGTCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

9.62

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 7 - 63 1.6e-08 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 104, 184, 308
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 109
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 270
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 270
BglII AGATCT 1 cut(s) 233
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 107, 164
BmrFI CCNGG 2 cut(s) 107, 164
BpuMI CCSGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 143, 163, 188
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 1 cut(s) 317
BssMI GATC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 74
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 11, 281
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 105, 162
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 103, 183, 307
CviJI RGCY 5 cut(s) 5, 44, 152, 209, 275
CviKI_1 RGCY 5 cut(s) 5, 44, 152, 209, 275
CviQI GTAC 3 cut(s) 103, 183, 307
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 33
FaiI YATR 3 cut(s) 266, 282, 294
FaqI GGGAC 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 143, 163, 188
HpaII CCGG 3 cut(s) 143, 163, 188
HphI GGTGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 85, 121, 237
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 72, 221, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 281
HpySE526I ACGT 1 cut(s) 101
Kzo9I GATC 1 cut(s) 233
Lsp1109I GCAGC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 288
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 193, 220
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 143, 163, 188
MspR9I CCNGG 2 cut(s) 107, 164
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 11, 281
NciI CCSGG 1 cut(s) 164
NdeII GATC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 97
PctI GAATGC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 3 cut(s) 104, 184, 308
RsaNI GTAC 3 cut(s) 103, 183, 307
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 107, 164
SetI ASST 4 cut(s) 26, 104, 108, 260
SexAI ACCWGGT 1 cut(s) 105
Sse9I AATT 1 cut(s) 288
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 105, 162
TaiI ACGT 1 cut(s) 104
TasI AATT 1 cut(s) 288
TatI WGTACW 1 cut(s) 306
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 97
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.