Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009961

Physical Location & Seq

Genomic Coordinates Forward (+)

42629596 .. 42631886

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G519000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCCATTTCCTCCTTCCCCACACTAGTAATCTCTCACCCATCTTCATCCCCCACTTTAACTTTGTCATTTTCATCAAGCCACCCCATGGCAAACGATGCCGTTTTCAGGGCCTCTCTAGTTTGGTTGGCTGCAGTCATAGTGGTAGTTGGAGTATTCACACAGTCTTTCAAGAAGATGATGTTAACGTACGTGGTTGGTGTGCTGGGTATTTCTGGGTTGCTCTTGCCCGATTGGGGTTACTTTGACCGAGACTTTTCGAGGTGGACGTCTCCGGTTTCAGCCGAGGAAAGAGCCTCTGAAGTTGCTCAAAGATCTGGGTTAATTAGAAGATTTAGAAAAAATCCTATGAGATCGGTTGCTTGTGCCACAGTTTATGGGTTTGCTCTACGGAAGTGGTGGATGTTCATATCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPC12

Protein Analysis

140

Amino Acids

15.5

Weight (kDa)

10.35

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34640
fragaria_vesca	FvH4_5g37320
malus_domestica	MD08G1183000.v1.1 MD15G1369400.v1.1
prunus_persica	Prupe.1G517300_v2.0.a1 Prupe.1G517300_v2.0.a1 Prupe.1G519000_v2.0.a1 Prupe.1G519000_v2.0.a1
pyrus_communis	pycom08g15680 pycom15g33070
rosa_chinensis	RchiOBHm_Chr7g0238961
rosa_laevigata	RLG00000000794
rosa_multiflora	Rmu_co8495677.1_g000002 Rmu_sc0004132.1_g000006
rosa_roxburghii	Rroxscaffold_3G00221440
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479000 Rh7BG451600 Rh7CG496200 Rh7DG463700
rosa_wichuraiana	Rw7G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	88, 108, 236
AgsI	TTSAA	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	25
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	246, 276
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	246, 276
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 119
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	87, 285
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 108, 236
BseDI	CCNNGG	2 cut(s)	87, 285
BseGI	GGATG	2 cut(s)	47, 408
BseLI	CCNNNNNNNGG	3 cut(s)	88, 108, 236
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	275
BsiWI	CGTACG	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	88, 108, 236
BsmAI	GTCTC	2 cut(s)	246, 276
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	314, 353
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	87, 285
BssMI	GATC	2 cut(s)	314, 353
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	165, 373
BstACI	GRCGYC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	47, 408
BstKTI	GATC	2 cut(s)	317, 356
BstMAI	GTCTC	2 cut(s)	246, 276
BstMBI	GATC	2 cut(s)	314, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	47, 408
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	81, 113, 131, 284, 296, 417
CviKI_1	RGCY	6 cut(s)	81, 113, 131, 284, 296, 417
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	2 cut(s)	316, 355
DpnII	GATC	2 cut(s)	314, 353
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	89, 140, 350, 378, 410
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	34, 415
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	26, 119
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	186, 267
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	186, 267
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	165, 373
HpyCH4IV	ACGT	3 cut(s)	188, 192, 269
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	3 cut(s)	188, 192, 269
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	314, 353
LpnPI	CCDG	5 cut(s)	94, 191, 201, 288, 303
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	26, 119
MaeII	ACGT	3 cut(s)	188, 192, 269
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	316, 355
MboI	GATC	2 cut(s)	314, 353
MboII	GAAGA	3 cut(s)	36, 187, 342
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	5 cut(s)	22, 124, 255, 280, 307
MseI	TTAA	3 cut(s)	59, 185, 323
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	314, 353
NlaIII	CATG	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
Pfl23II	CGTACG	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	205
PspLI	CGTACG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	59, 185, 323
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	314, 353
Sau96I	GGNCC	1 cut(s)	111
SetI	ASST	5 cut(s)	191, 195, 266, 272, 419
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	1 cut(s)	324
SspMI	CTAG	2 cut(s)	26, 119
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	165, 373
TaiI	ACGT	3 cut(s)	191, 195, 272
TaqI	TCGA	1 cut(s)	260
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	59, 185, 323
Tru9I	TTAA	3 cut(s)	59, 185, 323
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	36, 63, 397
TspGWI	ACGGA	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	26, 119
ZraI	GACGTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.