Rh7DG463700

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009961
Physical Location & Seq
Forward (+)
66088167 .. 66093209
5043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG463700.1

Sequence Viewer

Length: 513 bp
ATGGCCAACCACGCCGTCTTCAGGTCCTCTCTGGTTTGGTTAGCGCTAGTTCTCGTGGTTGTTGGGATTTGCACTCAGTCTTTGAAGAAGATCATGGTGACTTACCTGGTTGGTGTGATCGGAATCGGGGGTGTGCTTTTACCTGATTGGGACTACTTTGACCGGGATTTTTCCCGGTGGAGTTCTCCGGTTACGGTTGAGGAAAGGGCCTCTGCGATTGCAACTGCTGAAAGATCTGGATTAGCAAGATTCAAAAGGCATCCTATGAGATTGGCTGCTTATGCCACAATTTATGGGTTTGCTCTGTACAAATGGTGGAGTGTGTGGTATATGTTTTGGGAACTTTTGTACCGTTGGATCAGTCCCTCAATATCACAACACTTGCTTGCTGTAACTCTCACTCTCTCTCTCTCGATCGGCCGGCAACAATTGCAGTCCCCGTCTCTCGAGAATCGCAGGTTCTTAAACAGAAGGGAAGCAACACTCTGTACTGCTGGCTACTGCCCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

9.76

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 8 - 63 7.3e-07 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 447
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 2 cut(s) 3, 418
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 3 cut(s) 308, 350, 490
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 85, 253
AjnI CCWGG 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 446
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 3 cut(s) 3, 207, 418
ApeKI GCWGC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 24, 207
AsuC2I CCSGG 2 cut(s) 164, 175
AsuHPI GGTGA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 24
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 164, 175
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 447
BglII AGATCT 1 cut(s) 233
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 107, 164, 175
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 24, 207
BmrFI CCNGG 3 cut(s) 107, 164, 175
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 10
BpuMI CCSGG 2 cut(s) 164, 175
BsaBI GATNNNNATC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 418
BseXI GCAGC 1 cut(s) 262
Bsh1285I CGRYCG 2 cut(s) 417, 421
BshFI GGCC 3 cut(s) 5, 209, 420
BsiEI CGRYCG 2 cut(s) 417, 421
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 4 cut(s) 163, 175, 188, 421
BslFI GGGAC 3 cut(s) 164, 348, 421
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 3 cut(s) 164, 348, 421
BsnI GGCC 3 cut(s) 5, 209, 420
BsoBI CYCGRG 1 cut(s) 446
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 5 cut(s) 90, 117, 233, 357, 414
BspANI GGCC 3 cut(s) 5, 209, 420
BspCNI CTCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 447
BspPI GGATC 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 420
BssMI GATC 5 cut(s) 90, 117, 233, 357, 414
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 196, 353
BstAPI GCANNNNNTGC 1 cut(s) 430
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 387, 422, 496
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 5 cut(s) 93, 120, 236, 360, 417
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 90, 117, 233, 357, 414
BstMCI CGRYCG 2 cut(s) 417, 421
BstMWI GCNNNNNNNGC 3 cut(s) 11, 281, 430
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 105, 162, 173
BstSFI CTRYAG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZI CGGCCG 1 cut(s) 418
BsuRI GGCC 3 cut(s) 5, 209, 420
BtsCI GGATG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 387, 422, 496
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 24, 207
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 307, 349, 489
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 5, 209, 275, 420, 498
CviKI_1 RGCY 5 cut(s) 5, 209, 275, 420, 498
CviQI GTAC 3 cut(s) 307, 349, 489
DdeI CTNAG 1 cut(s) 75
DpnI GATC 5 cut(s) 92, 119, 235, 359, 416
DpnII GATC 5 cut(s) 90, 117, 233, 357, 414
EaeI YGGCCR 2 cut(s) 3, 418
EagI CGGCCG 1 cut(s) 418
EclXI CGGCCG 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 2 cut(s) 24, 207
EcoRII CCWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 1 cut(s) 97
FaiI YATR 6 cut(s) 95, 266, 282, 294, 330, 332
FaqI GGGAC 3 cut(s) 164, 348, 421
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 3 cut(s) 5, 209, 420
HapII CCGG 4 cut(s) 163, 175, 188, 421
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 3 cut(s) 123, 249, 451
HpaII CCGG 4 cut(s) 163, 175, 188, 421
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 4 cut(s) 237, 412, 446, 448
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 2 cut(s) 196, 353
HpyCH4V TGCA 3 cut(s) 72, 221, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 281, 430
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 420
KroNI GCCGGC 1 cut(s) 422
Kzo9I GATC 5 cut(s) 90, 117, 233, 357, 414
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 97, 190, 391
MalI GATC 5 cut(s) 92, 119, 235, 359, 416
MboI GATC 5 cut(s) 90, 117, 233, 357, 414
MboII GAAGA 3 cut(s) 10, 97, 100
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 288, 428
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 4 cut(s) 37, 193, 220, 376
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 420
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 163, 175, 188, 421
MspR9I CCNGG 3 cut(s) 107, 164, 175
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 11, 281, 430
NaeI GCCGGC 1 cut(s) 422
NciI CCSGG 2 cut(s) 164, 175
NdeII GATC 5 cut(s) 90, 117, 233, 357, 414
NgoMIV GCCGGC 1 cut(s) 420
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 446
PdiI GCCGGC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 123, 249, 451
PkrI GCNGC 1 cut(s) 277
Ple19I CGATCG 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 2 cut(s) 24, 207
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 1 cut(s) 233
PvuI CGATCG 1 cut(s) 417
RsaI GTAC 3 cut(s) 308, 350, 490
RsaNI GTAC 3 cut(s) 307, 349, 489
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 5 cut(s) 90, 117, 233, 357, 414
Sau96I GGNCC 2 cut(s) 24, 207
ScrFI CCNGG 3 cut(s) 107, 164, 175
SetI ASST 4 cut(s) 26, 108, 145, 461
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 509
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 2 cut(s) 288, 428
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 105, 162, 173
TaaI ACNGT 2 cut(s) 196, 353
TaqI TCGA 2 cut(s) 413, 447
TasI AATT 2 cut(s) 288, 428
TatI WGTACW 2 cut(s) 306, 488
TfiI GAWTC 3 cut(s) 123, 249, 451
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.