MD15G1369400.v1.1

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009961
Physical Location & Seq
Reverse (-)
44874565 .. 44876280
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1369400.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGCAAACGATGCCGTTTTCAGGTCTTCACTTGTTTGGTTAGCAGTAGTAATAGTGGTAGTTGGAATATGTACTCAGTCCTTGAAGAAGATGATGTTAACGTACGTGGTTGGTGTGCTGGGAATTGCTGGGCTGCTTTTGCCTGATTGGGGTTACTTTGACCGCGACTTCTCGCGGTGGACCTCTCCGGTTTCGTTCGAGGAAAGAGCCTCTGAAATTGCCCAAAGATCTGGACTAATAACAAGATTTAGAAAGTATCCTCTGAGATTGGCTGCTTATGCCACAGTTTATGGGTTTGCTCTGTACAAGTGGTGGGTGTTCATATCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

111

Amino Acids

12.54

Weight (kDa)

9.66

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 7 - 63 3.2e-08 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 165, 175
AciI CCGC 2 cut(s) 163, 175
AfaI GTAC 3 cut(s) 73, 104, 305
AfiI CCNNNNNNNGG 2 cut(s) 21, 149
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 133, 272
AspS9I GGNCC 1 cut(s) 180
AvaII GGWCC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 120, 259
BciVI GTATCC 1 cut(s) 267
BfuI GTATCC 1 cut(s) 267
BglII AGATCT 1 cut(s) 227
BisI GCNGC 2 cut(s) 134, 273
BlsI GCNGC 2 cut(s) 135, 274
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 149
BseLI CCNNNNNNNGG 2 cut(s) 21, 149
BseMII CTCAG 2 cut(s) 89, 254
BseXI GCAGC 2 cut(s) 120, 259
BseYI CCCAGC 2 cut(s) 118, 128
Bsh1236I CGCG 2 cut(s) 165, 175
BsiSI CCGG 1 cut(s) 188
BsiWI CGTACG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 21, 149
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 227
BspACI CCGC 2 cut(s) 163, 175
BspCNI CTCAG 2 cut(s) 88, 255
BspFNI CGCG 2 cut(s) 165, 175
BsrGI TGTACA 1 cut(s) 303
BssMI GATC 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 75, 263
BstFNI CGCG 2 cut(s) 165, 175
BstKTI GATC 1 cut(s) 230
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 3 cut(s) 11, 139, 278
BstUI CGCG 2 cut(s) 165, 175
BstV1I GCAGC 2 cut(s) 120, 259
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 1 cut(s) 227
BsuI GTATCC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 3 cut(s) 72, 103, 304
CviJI RGCY 4 cut(s) 133, 209, 272, 330
CviKI_1 RGCY 4 cut(s) 133, 209, 272, 330
CviQI GTAC 3 cut(s) 72, 103, 304
DdeI CTNAG 2 cut(s) 75, 263
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 180
FaiI YATR 4 cut(s) 70, 279, 291, 323
Fnu4HI GCNGC 2 cut(s) 134, 273
Fsp4HI GCNGC 2 cut(s) 134, 273
GluI GCNGC 2 cut(s) 134, 273
GsaI CCCAGC 2 cut(s) 122, 132
HapII CCGG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 99, 180
Hpy188I TCNGA 2 cut(s) 214, 264
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 99, 180
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 101, 105
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 139, 278
HpyF3I CTNAG 2 cut(s) 75, 263
HpySE526I ACGT 2 cut(s) 101, 105
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 227
LpnPI CCDG 6 cut(s) 7, 104, 114, 156, 201, 216
Lsp1109I GCAGC 2 cut(s) 120, 259
MaeII ACGT 2 cut(s) 101, 105
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 3 cut(s) 18, 97, 100
MflI RGATCY 1 cut(s) 227
MluCI AATT 2 cut(s) 123, 216
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 193, 193, 220, 270
MseI TTAA 1 cut(s) 98
MspI CCGG 1 cut(s) 188
MvnI CGCG 2 cut(s) 165, 175
MwoI GCNNNNNNNGC 3 cut(s) 11, 139, 278
NdeII GATC 1 cut(s) 227
Pfl23II CGTACG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 135, 274
Ppu21I YACGTR 1 cut(s) 106
PspFI CCCAGC 2 cut(s) 118, 128
PspLI CGTACG 1 cut(s) 102
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 3 cut(s) 73, 104, 305
RsaNI GTAC 3 cut(s) 72, 103, 304
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 2 cut(s) 134, 273
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 180
SetI ASST 5 cut(s) 26, 104, 108, 185, 332
SinI GGWCC 1 cut(s) 180
Sse9I AATT 2 cut(s) 123, 216
SsiI CCGC 2 cut(s) 163, 175
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 104, 108
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 123, 216
TatI WGTACW 2 cut(s) 71, 303
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseI GCWGC 2 cut(s) 133, 272
TspDTI ATGAA 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.