Rroxscaffold_3G00221440

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009961
Physical Location & Seq
Reverse (-)
4208680 .. 4210941
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221440.1

Sequence Viewer

Length: 336 bp
ATGGCCAACCACGCCGTCTTCAGGTCCTCTCTGGTTTGGTTAGCGCTAGTTCTCGTGGTTGTTGGGATTTGCACTCAGTCTTTGAAGAAGATCATGGTGACTTACCTGGTTGGTGTGATCGGAATAGGGGGTGTGCTTTTGCCTGATTGGGGCTACTTTGACCGGGATTTTTCCCGGTGGGGTTCTCCGGTTACGGTTGAGGAAAGGGCCTCTGCGATTGCAACTGCTGAAAGATCTGGATTAGCAAGAATCAAAAGGTATCCTATGAGATTGGCTGCTTATGCCACAATTTATGGGTTTGCTCTGTACAAGTGGTGGAGGTTTGTATCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

111

Amino Acids

12.46

Weight (kDa)

10.0

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 8 - 62 7.6e-07 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 21, 149
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 2 cut(s) 3, 207
ApeKI GCWGC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 24, 207
AsuC2I CCSGG 2 cut(s) 164, 175
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 270
BcnI CCSGG 2 cut(s) 164, 175
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 47
BfuI GTATCC 1 cut(s) 270
BglII AGATCT 1 cut(s) 233
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 107, 164, 175
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 24, 207
BmrFI CCNGG 3 cut(s) 107, 164, 175
BpiI GAAGAC 1 cut(s) 10
BpuMI CCSGG 2 cut(s) 164, 175
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 149
BseBI CCWGG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 21, 149
BseMII CTCAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 2 cut(s) 5, 209
BsiSI CCGG 3 cut(s) 163, 175, 188
BslI CCNNNNNNNGG 2 cut(s) 21, 149
BsnI GGCC 2 cut(s) 5, 209
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 3 cut(s) 90, 117, 233
BspANI GGCC 2 cut(s) 5, 209
BspCNI CTCAG 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 306
BssMI GATC 3 cut(s) 90, 117, 233
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 93, 120, 236
BstMBI GATC 3 cut(s) 90, 117, 233
BstMWI GCNNNNNNNGC 2 cut(s) 11, 281
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 105, 162, 173
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 5, 209
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 24, 207
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 5, 153, 209, 275
CviKI_1 RGCY 4 cut(s) 5, 153, 209, 275
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 92, 119, 235
DpnII GATC 3 cut(s) 90, 117, 233
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 4
EcoO109I RGGNCCY 2 cut(s) 24, 207
EcoRII CCWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 97
FaiI YATR 4 cut(s) 95, 266, 282, 294
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 5, 209
HapII CCGG 3 cut(s) 163, 175, 188
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 249
HpaII CCGG 3 cut(s) 163, 175, 188
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 72, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 281
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 90, 117, 233
LpnPI CCDG 9 cut(s) 7, 17, 92, 119, 156, 176, 188, 201, 222
Lsp1109I GCAGC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 97, 190
MalI GATC 3 cut(s) 92, 119, 235
MboI GATC 3 cut(s) 90, 117, 233
MboII GAAGA 3 cut(s) 10, 97, 100
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 288
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 37, 193, 220, 312
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 163, 175, 188
MspR9I CCNGG 3 cut(s) 107, 164, 175
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 11, 281
NciI CCSGG 2 cut(s) 164, 175
NdeII GATC 3 cut(s) 90, 117, 233
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 2 cut(s) 24, 207
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 3 cut(s) 90, 117, 233
Sau96I GGNCC 2 cut(s) 24, 207
ScrFI CCNGG 3 cut(s) 107, 164, 175
SetI ASST 4 cut(s) 26, 108, 260, 323
SexAI ACCWGGT 1 cut(s) 105
SinI GGWCC 1 cut(s) 24
Sse9I AATT 1 cut(s) 288
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 105, 162, 173
TaaI ACNGT 1 cut(s) 196
TasI AATT 1 cut(s) 288
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 249
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.