Prupe.1G517300_v2.0.a1

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009961
Physical Location & Seq
Reverse (-)
42525163 .. 42527063
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G517300.2

Sequence Viewer

Length: 333 bp
ATGGCAAACGATGCCGTTTTCAGGGCCTCTCTGGTTTGGTTGGCTGCAGTTATAGTGGTAGTTGGAGTATGCACACAGTCTTTCAAGAAGATGATGTACACTTACGTGGTTGGTGTGCTGGGTATTTCTGGGTTGCTCTTGCCCGATTGGGGTTACTTTGACCGAGACTTTTCGCGGTGGACGTCTCCGGTTTCAGCCGAGGAAAGAGCCTCTGAAGTTGCTCAAAGATCTGGGTTAATTAGAAGATTTAGAAAAAATCCTATGAGATTGGTTGCTTATGCCACAGTTTATGGGTTTGCTCTACACAAGTGGTGGATGTTCATATCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

111

Amino Acids

12.55

Weight (kDa)

9.91

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 21, 149
AgsI TTSAA 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 159, 189
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbvI GCAGC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 159, 189
BfmI CTRYAG 1 cut(s) 45
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 149
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 21, 149
BseXI GCAGC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 21, 149
BsmAI GTCTC 2 cut(s) 159, 189
BsmBI CGTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 227
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 26
BspFNI CGCG 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 227
BssNI GRCGYC 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 78, 286
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 106
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 1 cut(s) 230
BstMAI GTCTC 2 cut(s) 159, 189
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 5 cut(s) 26, 44, 197, 209, 330
CviKI_1 RGCY 5 cut(s) 26, 44, 197, 209, 330
CviQI GTAC 1 cut(s) 97
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 189
FaiI YATR 6 cut(s) 53, 70, 263, 279, 291, 323
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 182
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 99, 180
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 2 cut(s) 99, 180
HpyCH4III ACNGT 2 cut(s) 78, 286
HpyCH4IV ACGT 2 cut(s) 105, 182
HpyCH4V TGCA 2 cut(s) 47, 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 105, 182
Hsp92I GRCGYC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 227
LpnPI CCDG 6 cut(s) 7, 17, 104, 114, 201, 216
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 2 cut(s) 105, 182
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 2 cut(s) 100, 255
MflI RGATCY 1 cut(s) 227
MluCI AATT 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 37, 193, 220
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PkrI GCNGC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 24
SetI ASST 3 cut(s) 108, 185, 332
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 1 cut(s) 237
SsiI CCGC 1 cut(s) 175
TaaI ACNGT 2 cut(s) 78, 286
TaiI ACGT 2 cut(s) 108, 185
TaqII GACCGA 1 cut(s) 177
TasI AATT 1 cut(s) 237
TatI WGTACW 1 cut(s) 96
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 310
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.