Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0009961

Physical Location & Seq

Genomic Coordinates Reverse (-)

26023 .. 27691

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggccaaccacgccgtgttcaggtcctctctggtttggttagcgctagttctcgtggttgttgggatttgcactcagtctttgaagaagatcatggtgacttacctggttggtgtgatcggaatcgggggtgtgcttttacctgattgggactactttgaccgggatttttcccggtggagttctccggttacggttgaggaaagggcctctgcgattgcaactgctgaaagatctggattagcaaggttatccctcaataccacaacacttgcaaactctcacactctctctctctctctctccatcggccggcaacaattgcagtccccgtctctcgagaatcgcaggttcttaaacaggagggaagcaacactctgtactgctggctactgccctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPC12

Protein Analysis

134

Amino Acids

14.74

Weight (kDa)

9.35

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34640
fragaria_vesca	FvH4_5g37320
malus_domestica	MD08G1183000.v1.1 MD15G1369400.v1.1
prunus_persica	Prupe.1G517300_v2.0.a1 Prupe.1G517300_v2.0.a1 Prupe.1G519000_v2.0.a1 Prupe.1G519000_v2.0.a1
pyrus_communis	pycom08g15680 pycom15g33070
rosa_chinensis	RchiOBHm_Chr7g0238961
rosa_laevigata	RLG00000000794
rosa_multiflora	Rmu_co8495677.1_g000002 Rmu_sc0004132.1_g000006
rosa_roxburghii	Rroxscaffold_3G00221440
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479000 Rh7BG451600 Rh7CG496200 Rh7DG463700
rosa_wichuraiana	Rw7G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AcoI	YGGCCR	2 cut(s)	3, 310
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	382
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	21, 312
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	338
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	3 cut(s)	3, 207, 310
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	24, 207
AsuC2I	CCSGG	2 cut(s)	164, 175
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	53
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	2 cut(s)	164, 175
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	107, 164, 175
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	24, 207
BmrFI	CCNGG	3 cut(s)	107, 164, 175
BpuMI	CCSGG	2 cut(s)	164, 175
BsaBI	GATNNNNATC	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 312
Bse118I	RCCGGY	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	21, 312
BseMII	CTCAG	1 cut(s)	89
BseX3I	CGGCCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	3 cut(s)	5, 209, 312
BsiEI	CGRYCG	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	163, 175, 188, 313
BslFI	GGGAC	2 cut(s)	164, 313
BslI	CCNNNNNNNGG	2 cut(s)	21, 312
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	164, 313
BsnI	GGCC	3 cut(s)	5, 209, 312
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	90, 117, 233
BspANI	GGCC	3 cut(s)	5, 209, 312
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	3 cut(s)	90, 117, 233
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	314, 388
BstDEI	CTNAG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	93, 120, 236
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	90, 117, 233
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 322
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	105, 162, 173
BstSFI	CTRYAG	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	5, 209, 312
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	314, 388
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	24, 207
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	381
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	4 cut(s)	5, 209, 312, 390
CviKI_1	RGCY	4 cut(s)	5, 209, 312, 390
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	92, 119, 235
DpnII	GATC	3 cut(s)	90, 117, 233
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	3, 310
EagI	CGGCCG	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	24, 207
EcoRII	CCWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FaqI	GGGAC	2 cut(s)	164, 313
FatI	CATG	1 cut(s)	93
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	5, 209, 312
HapII	CCGG	4 cut(s)	163, 175, 188, 313
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	123, 343
HpaII	CCGG	4 cut(s)	163, 175, 188, 313
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	3 cut(s)	237, 338, 340
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	72, 221, 275, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 322
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	90, 117, 233
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	97, 190
MalI	GATC	3 cut(s)	92, 119, 235
MboI	GATC	3 cut(s)	90, 117, 233
MboII	GAAGA	2 cut(s)	97, 100
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	37, 193, 220, 266, 357
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	163, 175, 188, 313
MspR9I	CCNGG	3 cut(s)	107, 164, 175
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	11, 322
NaeI	GCCGGC	1 cut(s)	314
NciI	CCSGG	2 cut(s)	164, 175
NdeII	GATC	3 cut(s)	90, 117, 233
NgoMIV	GCCGGC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	123, 343
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	24, 207
PspPPI	RGGWCCY	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	90, 117, 233
Sau96I	GGNCC	2 cut(s)	24, 207
ScrFI	CCNGG	3 cut(s)	107, 164, 175
SetI	ASST	5 cut(s)	26, 108, 145, 251, 353
SexAI	ACCWGGT	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	401
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	105, 162, 173
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	123, 343
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	338
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.