Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

29238551 .. 29241350

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAAGCGAAACAAGACGTGTTATCCAGTGCGGCGAAGAGTATCACAGCATCACCAATTCAGGAACTCTCTCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGATTTCCCGACTTCCCTGCACCTTCCCACATCAAAGACGCTGCCATTTCCGCTATCAATTCCGACTTCAACCAGTACAGGCACGTACAAGGAATATGTGACCGCGTGGCAATCATAATGAACCAAATGCACGGATTGGATGTCAACCCTCTTACTGATATAGCTATTTGTTGTGGCCAAACTGAAGCATTTGCGGCAGCAGCGTTTGCTATAATAGACAAGGGTGATGAAGTTGTACTGTTTGACCCTTGTTATGAAACATATGAAGGGTGCATTAGGATAGCTGGGGGAGTTCCAGTATATGTGCCCCTTGATCCACCTCATTGGACCTTGGACCCTAACACATTCATCAAGTCTTTTTCTGGGAGAACAAAAGCTGTAGTACTCAACAGTCCTCACAATCCAACTGGCAAAGTTTTCACAAAAGATGAACTTGAGATTATTGCTGGAGAATGTCGCAGCAGGAACTGCCTAGCTATAACAGATGAAGTATATGAACATATAACATTTGACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGCAAGGACGGACCATTATCACATCTTCCTTATCTAAAACGTTCAGTGTCACAGGATGGAGGATTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCTGCTATCAGAAACATTCATGTGAAAGTTACCGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTAAGAAGCCCCCTTGAATACTTTGAATCATTGAGAAGCGATTATGAATCAAGGAGAGATTACGTCGTCAATCTACTTGCTAGAATTGGATTCAAGATTCATTTCAAGCCTCATGGTGCATTCTTTTTATTTGCAGAGCTGCCTGAAAATTGCCCACTCTCTGATGTAGAATATGTTCGAAAGTTAATCCAACAAGCAGGAGTAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGACTCATCTGTGGAGAAACTTGCTCAGGAGCGTTATAGCTATCAGGATAGATACATCAGATTTGCATTCTGTAAAAATGATCAGACTTTGGCTTCTGCAGCAAAAAGACTTGGGGAGCTTTTGGATACTGCAGGGTGTCTCAAGCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

407

Amino Acids

44.74

Weight (kDa)

5.96

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	33 - 284	6.3e-44	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1052
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	32, 162, 214, 305
AclI	AACGTT	1 cut(s)	701
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	4 cut(s)	188, 198, 348, 495
AfiI	CCNNNNNNNGG	1 cut(s)	1052
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	5 cut(s)	181, 848, 857, 925, 937
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	655, 1045
Alw26I	GTCTC	1 cut(s)	1211
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	7 cut(s)	152, 308, 311, 570, 818, 970, 1166
Asp700I	GAANNNNTTC	2 cut(s)	114, 1005
AspS9I	GGNCC	3 cut(s)	438, 445, 672
AsuHPI	GGTGA	2 cut(s)	45, 347
AsuII	TTCGAA	1 cut(s)	1009
AvaII	GGWCC	3 cut(s)	438, 445, 672
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	288
BbvI	GCAGC	7 cut(s)	139, 320, 323, 582, 805, 957, 1178
BccI	CCATC	3 cut(s)	104, 711, 723
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	657, 1047
BciVI	GTATCC	1 cut(s)	1186
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	1 cut(s)	1211
BfaI	CTAG	2 cut(s)	584, 912
BfmI	CTRYAG	3 cut(s)	489, 1164, 1197
BfuI	GTATCC	1 cut(s)	1186
BisI	GCNGC	9 cut(s)	33, 153, 306, 309, 312, 571, 819, 971, 1167
BlsI	GCNGC	9 cut(s)	34, 154, 307, 310, 313, 572, 820, 972, 1168
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	657, 1047
Bme18I	GGWCC	3 cut(s)	438, 445, 672
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	438, 445, 672
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	657, 1047
BmsI	GCATC	2 cut(s)	59, 77
BpmI	CTGGAG	2 cut(s)	579, 726
Bpu10I	CCTNAGC	1 cut(s)	1092
Bpu14I	TTCGAA	1 cut(s)	1009
BpuEI	CTTGAG	2 cut(s)	566, 1193
BsaAI	YACGTR	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	1052
Bse1I	ACTGG	4 cut(s)	27, 184, 407, 523
BseBI	CCWGG	2 cut(s)	657, 1047
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	4 cut(s)	256, 722, 734, 1055
BseLI	CCNNNNNNNGG	1 cut(s)	1052
BseMII	CTCAG	1 cut(s)	1106
BseNI	ACTGG	4 cut(s)	27, 184, 407, 523
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	7 cut(s)	139, 320, 323, 582, 805, 957, 1178
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	114, 780
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	1052
BsmAI	GTCTC	1 cut(s)	1211
BsmI	GAATGC	3 cut(s)	666, 950, 1133
BsnI	GGCC	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	1009
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	424, 1147
BspACI	CCGC	4 cut(s)	32, 162, 214, 305
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	1105
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	2 cut(s)	1168, 1201
BspPI	GGATC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	1009
BsrI	ACTGG	4 cut(s)	27, 184, 407, 523
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	424, 1147
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	657, 1047
Bst4CI	ACNGT	3 cut(s)	351, 503, 626
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	317, 579
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	1009
BstDEI	CTNAG	1 cut(s)	1092
BstF5I	GGATG	4 cut(s)	256, 722, 734, 1055
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	427, 1150
BstMAI	GTCTC	1 cut(s)	1211
BstMBI	GATC	2 cut(s)	424, 1147
BstMWI	GCNNNNNNNGC	8 cut(s)	161, 305, 311, 317, 579, 752, 827, 1166
BstNI	CCWGG	2 cut(s)	657, 1047
BstSCI	CCNGG	2 cut(s)	655, 1045
BstSFI	CTRYAG	3 cut(s)	489, 1164, 1197
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	7 cut(s)	139, 320, 323, 582, 805, 957, 1178
BstXI	CCANNNNNNTGG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	1186
BsuRI	GGCC	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	4 cut(s)	256, 722, 734, 1055
BtsIMutI	CAGTG	3 cut(s)	34, 631, 712
CaiI	CAGNNNCTG	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	438, 445, 672
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	4 cut(s)	187, 197, 347, 494
CviAII	CATG	3 cut(s)	776, 944, 1064
CviQI	GTAC	4 cut(s)	187, 197, 347, 494
DdeI	CTNAG	1 cut(s)	1092
DpnI	GATC	2 cut(s)	426, 1149
DpnII	GATC	2 cut(s)	424, 1147
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	438, 445, 672
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	655, 1045
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	779, 947, 1067
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	3 cut(s)	775, 943, 1063
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	9 cut(s)	33, 153, 306, 309, 312, 571, 819, 971, 1167
FokI	GGATG	4 cut(s)	263, 729, 741, 1062
Fsp4HI	GCNGC	9 cut(s)	33, 153, 306, 309, 312, 571, 819, 971, 1167
FspBI	CTAG	2 cut(s)	584, 912
GluI	GCNGC	9 cut(s)	33, 153, 306, 309, 312, 571, 819, 971, 1167
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	579, 726
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	779, 947, 1067
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	1211
HinfI	GANTC	6 cut(s)	791, 857, 878, 921, 928, 1070
HphI	GGTGA	2 cut(s)	45, 347
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	175, 767, 994, 1127, 1152
Hpy188III	TCNNGA	5 cut(s)	62, 119, 925, 1094, 1112
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	899
HpyAV	CCTTC	3 cut(s)	104, 144, 371
HpyCH4III	ACNGT	3 cut(s)	351, 503, 626
HpyCH4IV	ACGT	4 cut(s)	18, 195, 701, 894
HpyF10VI	GCNNNNNNNGC	8 cut(s)	161, 305, 311, 317, 579, 752, 827, 1166
HpyF3I	CTNAG	1 cut(s)	1092
HpySE526I	ACGT	4 cut(s)	18, 195, 701, 894
Hsp92II	CATG	3 cut(s)	779, 947, 1067
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	2 cut(s)	424, 1147
LmnI	GCTCC	3 cut(s)	745, 1096, 1183
Lsp1109I	GCAGC	7 cut(s)	139, 320, 323, 582, 805, 957, 1178
LweI	GCATC	2 cut(s)	59, 77
MaeI	CTAG	2 cut(s)	584, 912
MaeII	ACGT	4 cut(s)	18, 195, 701, 894
MaeIII	GTNAC	3 cut(s)	209, 709, 784
MalI	GATC	2 cut(s)	426, 1149
MboI	GATC	2 cut(s)	424, 1147
MboII	GAAGA	2 cut(s)	49, 678
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	5 cut(s)	57, 169, 735, 915, 979
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	1064
MmeI	TCCRAC	3 cut(s)	198, 539, 1045
MnlI	CCTC	8 cut(s)	113, 270, 441, 516, 658, 714, 766, 951
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	2 cut(s)	114, 1005
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	833, 1016, 1215
MslI	CAYNNNNRTG	1 cut(s)	776
Msp20I	TGGCCA	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	657, 1047
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	3 cut(s)	666, 950, 1133
MvaI	CCWGG	2 cut(s)	657, 1047
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	8 cut(s)	161, 305, 311, 317, 579, 752, 827, 1166
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	424, 1147
NlaIII	CATG	3 cut(s)	779, 947, 1067
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	209, 709
NspV	TTCGAA	1 cut(s)	1009
PctI	GAATGC	3 cut(s)	666, 950, 1133
PdmI	GAANNNNTTC	2 cut(s)	114, 1005
PfeI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
PflMI	CCANNNNNTGG	1 cut(s)	1052
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	9 cut(s)	34, 154, 307, 310, 313, 572, 820, 972, 1168
PleI	GAGTC	1 cut(s)	1064
PpsI	GAGTC	1 cut(s)	1064
Ppu21I	YACGTR	1 cut(s)	196
Psp1406I	AACGTT	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	655, 1045
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	655, 1045
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	438, 445, 672
PsrI	GAACNNNNNNTAC	2 cut(s)	990, 1022
PstI	CTGCAG	2 cut(s)	1168, 1201
PstNI	CAGNNNCTG	1 cut(s)	579
RsaI	GTAC	4 cut(s)	188, 198, 348, 495
RsaNI	GTAC	4 cut(s)	187, 197, 347, 494
RseI	CAYNNNNRTG	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	833, 1016, 1215
SatI	GCNGC	9 cut(s)	33, 153, 306, 309, 312, 571, 819, 971, 1167
Sau3AI	GATC	2 cut(s)	424, 1147
Sau96I	GGNCC	3 cut(s)	438, 445, 672
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	1 cut(s)	1064
ScrFI	CCNGG	2 cut(s)	657, 1047
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	59, 77
SfcI	CTRYAG	3 cut(s)	489, 1164, 1197
SfuI	TTCGAA	1 cut(s)	1009
SinI	GGWCC	3 cut(s)	438, 445, 672
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	2 cut(s)	545, 1208
SmoI	CTYRAG	2 cut(s)	545, 1208
Sse9I	AATT	5 cut(s)	57, 169, 735, 915, 979
SsiI	CCGC	4 cut(s)	32, 162, 214, 305
SspMI	CTAG	2 cut(s)	584, 912
StyD4I	CCNGG	2 cut(s)	655, 1045
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	351, 503, 626
TaiI	ACGT	4 cut(s)	21, 198, 704, 897
TaqI	TCGA	1 cut(s)	1009
TasI	AATT	5 cut(s)	57, 169, 735, 915, 979
TatI	WGTACW	3 cut(s)	186, 346, 493
TauI	GCSGC	2 cut(s)	35, 308
TfiI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
Tru1I	TTAA	3 cut(s)	833, 1016, 1215
Tru9I	TTAA	3 cut(s)	833, 1016, 1215
TscAI	CASTG	3 cut(s)	34, 631, 712
TseFI	GTSAC	2 cut(s)	209, 709
TseI	GCWGC	7 cut(s)	152, 308, 311, 570, 818, 970, 1166
Tsp45I	GTSAC	2 cut(s)	209, 709
TspGWI	ACGGA	2 cut(s)	258, 685
TspRI	CASTG	3 cut(s)	34, 631, 712
Van91I	CCANNNNNTGG	1 cut(s)	1052
VpaK11BI	GGWCC	3 cut(s)	438, 445, 672
XmnI	GAANNNNTTC	2 cut(s)	114, 1005
XspI	CTAG	2 cut(s)	584, 912
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.