Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

55903881 .. 55906867

Gene Structure 2987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG474500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAGAGAAACGAGAATTGTTATCCAGTGTAGCAAAGAGCATTACAGCATCACCAATTCAGGAACTGTCCCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGTTTTCCAGACTTCCCTGCACCTTCCCACATCAAAGACGCTGCCATTTCCGCCATCAATTCCGACTTCAATCAGTACAGGCACGTGCAAGGAATATGTGACTACGTGGCAATCGTAATGAACCAAATGCACGGATTAGATGTCAACCCTCTCACTGATGTAGCTATTTGTTGTGGCCAAACTGAAGCATTTGCTGCAGCAACGTTTGCAATAATAGACAAGGGTGATGAAGTTGTACTGTTTGACCCTTGTTATGAAACATATGAAGGATGTATTAAGATGGCTGGGGGAGTCCCTGTATATGTGCCCCTTGATCCACCTCACTGGACCTTGGACCCTAACAAATTCATCAAGTCCTTTTCTGGGAGAACAAAAGCCGTAATACTCAACAGTCCTCACAATCCAACCGGCAAAGTTTTCACCAAAGATGAACTTGAGATTATTGCTGGAGAATGCCGCACCAGGAACTGCCTAGCTATAACAGATGAAGTATATGAACATATAACATTTAACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGAGAGAGCGGACCATCATCACATCTTCCTTATCTAAAACGTTCTGTGTCACAGGATGGAGGGTTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCTGCAATCAGAAACATTCATGTTAAAGTTACAGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGAGAAGTCCTCCTGAATACTTTGAATCATTGAGAAGTGTAAGGATTATGAATCAAGGAGAGACTACATCGTCAATTTACTTGCCAGAATTGGATTCAAGATTCATTTCAAGCCTCAGGGTGCATTCTTTTTATTTGCAGAGATACCTGAAAATTGCCCACTTTCTGATGTATGCTTGTCTTCTATGTCGTTGCAATGTTATAGAAAAAAAATCAATTCTTTTGTCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

354

Amino Acids

39.3

Weight (kDa)

6.26

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	33 - 285	3.4e-44	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	901
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	3 cut(s)	162, 568, 670
AclI	AACGTT	2 cut(s)	314, 701
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	188, 348
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	4 cut(s)	181, 857, 930, 942
AjnI	CCWGG	2 cut(s)	572, 655
AluBI	AGCT	4 cut(s)	275, 587, 746, 818
AluI	AGCT	4 cut(s)	275, 587, 746, 818
Alw26I	GTCTC	1 cut(s)	887
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	3 cut(s)	67, 579, 794
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	4 cut(s)	152, 305, 308, 818
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	438, 445, 672
AsuHPI	GGTGA	3 cut(s)	45, 347, 523
AvaII	GGWCC	3 cut(s)	438, 445, 672
AxyI	CCTNAGG	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	1004
BbvI	GCAGC	4 cut(s)	139, 292, 320, 805
BccI	CCATC	7 cut(s)	81, 104, 173, 385, 683, 711, 723
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	2 cut(s)	574, 657
BcoDI	GTCTC	1 cut(s)	887
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	5 cut(s)	153, 306, 309, 568, 819
BlsI	GCNGC	5 cut(s)	154, 307, 310, 569, 820
Bme1390I	CCNGG	2 cut(s)	574, 657
Bme18I	GGWCC	3 cut(s)	438, 445, 672
BmgT120I	GGNCC	3 cut(s)	438, 445, 672
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	574, 657
BmsI	GCATC	2 cut(s)	59, 77
BpiI	GAAGAC	1 cut(s)	1004
BplI	GAGNNNNNCTC	2 cut(s)	826, 858
BpmI	CTGGAG	2 cut(s)	579, 726
BpuEI	CTTGAG	1 cut(s)	566
BsaAI	YACGTR	2 cut(s)	196, 217
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	27, 440
Bse21I	CCTNAGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	1033
BseBI	CCWGG	2 cut(s)	574, 657
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	3 cut(s)	386, 722, 734
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	1 cut(s)	961
BseNI	ACTGG	2 cut(s)	27, 440
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	139, 292, 320, 805
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	114, 780
BshFI	GGCC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	55, 389
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	887
BsmFI	GGGAC	2 cut(s)	55, 389
BsmI	GAATGC	2 cut(s)	569, 955
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	162, 568, 670
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	960
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	27, 440
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	574, 657
Bst4CI	ACNGT	4 cut(s)	69, 351, 503, 626
BstAPI	GCANNNNNTGC	2 cut(s)	305, 317
BstBAI	YACGTR	2 cut(s)	196, 217
BstDEI	CTNAG	1 cut(s)	947
BstF5I	GGATG	3 cut(s)	386, 722, 734
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	887
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 305, 317, 752, 827
BstNI	CCWGG	2 cut(s)	574, 657
BstSCI	CCNGG	2 cut(s)	572, 655
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	139, 292, 320, 805
BstV2I	GAAGAC	1 cut(s)	1004
BstXI	CCANNNNNNTGG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	947
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	386, 722, 734
BtsIMutI	CAGTG	4 cut(s)	34, 264, 433, 631
CaiI	CAGNNNCTG	3 cut(s)	67, 579, 794
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	438, 445, 672
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	187, 347
CviAII	CATG	1 cut(s)	776
CviJI	RGCY	8 cut(s)	275, 288, 395, 488, 587, 746, 818, 945
CviKI_1	RGCY	8 cut(s)	275, 288, 395, 488, 587, 746, 818, 945
CviQI	GTAC	2 cut(s)	187, 347
DdeI	CTNAG	1 cut(s)	947
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	438, 445, 672
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	196
Eco81I	CCTNAGG	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	572, 655
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	779
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	2 cut(s)	55, 389
FatI	CATG	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	153, 306, 309, 568, 819
FokI	GGATG	3 cut(s)	393, 729, 741
Fsp4HI	GCNGC	5 cut(s)	153, 306, 309, 568, 819
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	5 cut(s)	153, 306, 309, 568, 819
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	579, 726
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	779
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	6 cut(s)	402, 791, 857, 883, 926, 933
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	3 cut(s)	45, 347, 523
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	175, 767, 999
Hpy188III	TCNNGA	4 cut(s)	62, 119, 845, 930
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	104, 144, 371
HpyCH4III	ACNGT	4 cut(s)	69, 351, 503, 626
HpyCH4IV	ACGT	4 cut(s)	195, 216, 314, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 305, 317, 752, 827
HpyF3I	CTNAG	1 cut(s)	947
HpySE526I	ACGT	4 cut(s)	195, 216, 314, 701
Hsp92II	CATG	1 cut(s)	779
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	4 cut(s)	139, 292, 320, 805
LweI	GCATC	2 cut(s)	59, 77
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	4 cut(s)	195, 216, 314, 701
MaeIII	GTNAC	3 cut(s)	209, 709, 784
MalI	GATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	17, 678, 1004
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	9 cut(s)	17, 57, 169, 455, 735, 906, 920, 984, 1047
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	3 cut(s)	198, 539, 706
MnlI	CCTC	9 cut(s)	113, 270, 441, 516, 658, 714, 766, 852, 956
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	387, 621, 780
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	574, 657
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	569, 955
MvaI	CCWGG	2 cut(s)	574, 657
MwoI	GCNNNNNNNGC	5 cut(s)	161, 305, 317, 752, 827
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	779
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	209, 709
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	569, 955
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	791, 857, 883, 926, 933
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	5 cut(s)	154, 307, 310, 569, 820
PleI	GAGTC	1 cut(s)	410
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	2 cut(s)	196, 217
Psp1406I	AACGTT	2 cut(s)	314, 701
Psp6I	CCWGG	2 cut(s)	572, 655
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	572, 655
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	438, 445, 672
PstI	CTGCAG	1 cut(s)	310
PstNI	CAGNNNCTG	3 cut(s)	67, 579, 794
RsaI	GTAC	2 cut(s)	188, 348
RsaNI	GTAC	2 cut(s)	187, 347
SaqAI	TTAA	3 cut(s)	387, 621, 780
SatI	GCNGC	5 cut(s)	153, 306, 309, 568, 819
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	3 cut(s)	438, 445, 672
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	574, 657
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	59, 77
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	3 cut(s)	438, 445, 672
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	9 cut(s)	17, 57, 169, 455, 735, 906, 920, 984, 1047
SsiI	CCGC	3 cut(s)	162, 568, 670
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	2 cut(s)	572, 655
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	69, 351, 503, 626
TaiI	ACGT	4 cut(s)	198, 219, 317, 704
TasI	AATT	9 cut(s)	17, 57, 169, 455, 735, 906, 920, 984, 1047
TatI	WGTACW	2 cut(s)	186, 346
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	5 cut(s)	791, 857, 883, 926, 933
Tru1I	TTAA	3 cut(s)	387, 621, 780
Tru9I	TTAA	3 cut(s)	387, 621, 780
TscAI	CASTG	4 cut(s)	34, 271, 440, 631
TseFI	GTSAC	2 cut(s)	209, 709
TseI	GCWGC	4 cut(s)	152, 305, 308, 818
Tsp45I	GTSAC	2 cut(s)	209, 709
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	4 cut(s)	34, 271, 440, 631
VpaK11BI	GGWCC	3 cut(s)	438, 445, 672
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.