Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

69355432 .. 69359591

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG488900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAAGAGAAACGAGACTTGTTATCCAGTGTAGCAAAGAGCATTACAGCATCACCAATTCAGGAACTGTCCCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGTTTTCCAGACTTCCCTGCACCTTCCCACATCAAAGACGCTGCCATTTCCGCCATCAATTCCGACTTCAATCAGTACAGGCACGTGCAAGGAATATGTGACTACGTGGCAATCGTAATGAACCAAATGCACGGATTAGATGTCAACCCTCTCACTGATGTAGCTATTTGTTGTGGCCAAACTGAAGCATTTGCTGCAGCAACGTTTGCAATAATAGACAAGGGTGATGAAGTTGTACTGTTTGACCCTTGTTATGAAACATATGAAGGATGTATTAAGATGGCTGGGGGAGTCCCAGTATATGTGCCCCTTGATCCACCTCACTGGACCTTGGACCCTAACAAATTCATCAAGTCTTTTTCTGGGAGAACAAAAGCCGTAATACTCAACAGTCCTCACAATCCAACCGGCAAAGTTTTCACCAAAGATGAACTTGAGATTATTGCTGGAGAATGCCGCACCAGGAACTGCCTAGCTATAACAGATGAAGTATATGAACATATAACATTTAACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGAGAGAGCGGACCATCATCACATCTTCCTTATCTAAAACGTTCAGTGTCACAGGATGGAGGGTTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCTGCAATCAGAAACATTCATGTTAAAGTTACAGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGAGAAGTCCCCCTGAATACTTTGAATCATTGAGAAGTGATTATGAATCAAGGAGAGACTACATCGTCAATTTACTTGCCAGAATTGGATTCAAGATTCATTTCAAGCCTCAGGGTGCATTCTTTTTATTTGCAGAGATACCTGAAAATTGCCCACTTTCTGATGTATGCTTGTCTTCTATGTCGTTGCAATGTTATAGAAAAAAAATCAATTCTTTTGTCAGGGTAGAGTATGTTAGAAAGTTAATACAACAAGCAGGGGTAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGACTCATCTGTGGAGAAACATTCTCAGGATAGTTATAACTACCAGGATAGATACATCAGGTTTGCTTTCTGTAAAAGTGATCATACTTTGGCTTCTGCAGCAAAAAGACTTGGGGAGCTTTTGGATGCTGCAGGGTGTCTCAATCTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

426

Amino Acids

47.27

Weight (kDa)

6.36

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	33 - 372	7.6e-55	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AasI	GACNNNNNNGTC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	3 cut(s)	162, 568, 670
AclI	AACGTT	2 cut(s)	314, 701
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	188, 348
AfiI	CCNNNNNNNGG	1 cut(s)	1112
AgsI	TTSAA	4 cut(s)	181, 857, 925, 937
AjnI	CCWGG	4 cut(s)	572, 655, 1105, 1170
AluBI	AGCT	5 cut(s)	275, 587, 746, 818, 1246
AluI	AGCT	5 cut(s)	275, 587, 746, 818, 1246
Alw26I	GTCTC	3 cut(s)	9, 882, 1271
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	3 cut(s)	67, 579, 794
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	6 cut(s)	152, 305, 308, 818, 1226, 1256
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	438, 445, 672
AsuHPI	GGTGA	3 cut(s)	45, 347, 523
AvaII	GGWCC	3 cut(s)	438, 445, 672
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	6 cut(s)	139, 292, 320, 805, 1238, 1243
BccI	CCATC	7 cut(s)	81, 104, 173, 385, 683, 711, 723
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	4 cut(s)	574, 657, 1107, 1172
BclI	TGATCA	1 cut(s)	1207
BcoDI	GTCTC	3 cut(s)	9, 882, 1271
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	3 cut(s)	306, 1224, 1257
BisI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1227, 1257
BlsI	GCNGC	7 cut(s)	154, 307, 310, 569, 820, 1228, 1258
Bme1390I	CCNGG	4 cut(s)	574, 657, 1107, 1172
Bme18I	GGWCC	3 cut(s)	438, 445, 672
BmgT120I	GGNCC	3 cut(s)	438, 445, 672
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	4 cut(s)	574, 657, 1107, 1172
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	3 cut(s)	59, 77, 1243
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	2 cut(s)	579, 726
BpuEI	CTTGAG	1 cut(s)	566
BsaAI	YACGTR	2 cut(s)	196, 217
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	1112
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	3 cut(s)	27, 407, 440
Bse21I	CCTNAGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	1028
BseBI	CCWGG	4 cut(s)	574, 657, 1107, 1172
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	5 cut(s)	386, 722, 734, 1115, 1258
BseLI	CCNNNNNNNGG	1 cut(s)	1112
BseMI	GCAATG	1 cut(s)	1028
BseMII	CTCAG	2 cut(s)	956, 1166
BseNI	ACTGG	3 cut(s)	27, 407, 440
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	6 cut(s)	139, 292, 320, 805, 1238, 1243
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	114, 780
BshFI	GGCC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	3 cut(s)	55, 389, 825
BslI	CCNNNNNNNGG	1 cut(s)	1112
BsmAI	GTCTC	3 cut(s)	9, 882, 1271
BsmFI	GGGAC	3 cut(s)	55, 389, 825
BsmI	GAATGC	2 cut(s)	569, 950
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	424, 1207
BspACI	CCGC	3 cut(s)	162, 568, 670
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	955, 1165
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	3 cut(s)	310, 1228, 1261
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	1028
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	27, 407, 440
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	424, 1207
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	4 cut(s)	574, 657, 1107, 1172
Bst4CI	ACNGT	4 cut(s)	69, 351, 503, 626
BstAPI	GCANNNNNTGC	2 cut(s)	305, 317
BstBAI	YACGTR	2 cut(s)	196, 217
BstDEI	CTNAG	2 cut(s)	942, 1152
BstF5I	GGATG	5 cut(s)	386, 722, 734, 1115, 1258
BstKTI	GATC	2 cut(s)	427, 1210
BstMAI	GTCTC	3 cut(s)	9, 882, 1271
BstMBI	GATC	2 cut(s)	424, 1207
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1226
BstNI	CCWGG	4 cut(s)	574, 657, 1107, 1172
BstSCI	CCNGG	4 cut(s)	572, 655, 1105, 1170
BstSFI	CTRYAG	3 cut(s)	306, 1224, 1257
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	139, 292, 320, 805, 1238, 1243
BstV2I	GAAGAC	1 cut(s)	999
BstXI	CCANNNNNNTGG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	5 cut(s)	386, 722, 734, 1115, 1258
BtsIMutI	CAGTG	5 cut(s)	34, 264, 433, 631, 712
CaiI	CAGNNNCTG	3 cut(s)	67, 579, 794
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	438, 445, 672
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	187, 347
CviAII	CATG	2 cut(s)	776, 1124
CviQI	GTAC	2 cut(s)	187, 347
DdeI	CTNAG	2 cut(s)	942, 1152
DpnI	GATC	2 cut(s)	426, 1209
DpnII	GATC	2 cut(s)	424, 1207
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	438, 445, 672
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	196
Eco81I	CCTNAGG	1 cut(s)	942
EcoRII	CCWGG	4 cut(s)	572, 655, 1105, 1170
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	779, 1127
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	3 cut(s)	55, 389, 825
FatI	CATG	2 cut(s)	775, 1123
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	1207
Fnu4HI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1227, 1257
FokI	GGATG	5 cut(s)	393, 729, 741, 1122, 1265
Fsp4HI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1227, 1257
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1227, 1257
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	579, 726
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	779, 1127
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	7 cut(s)	402, 791, 857, 878, 921, 928, 1130
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	3 cut(s)	45, 347, 523
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	175, 767, 994
Hpy188III	TCNNGA	4 cut(s)	62, 119, 925, 1154
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	104, 144, 371
HpyCH4III	ACNGT	4 cut(s)	69, 351, 503, 626
HpyCH4IV	ACGT	4 cut(s)	195, 216, 314, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1226
HpyF3I	CTNAG	2 cut(s)	942, 1152
HpySE526I	ACGT	4 cut(s)	195, 216, 314, 701
Hsp92II	CATG	2 cut(s)	779, 1127
Ksp22I	TGATCA	1 cut(s)	1207
Kzo9I	GATC	2 cut(s)	424, 1207
LmnI	GCTCC	2 cut(s)	745, 1243
Lsp1109I	GCAGC	6 cut(s)	139, 292, 320, 805, 1238, 1243
LweI	GCATC	3 cut(s)	59, 77, 1243
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	4 cut(s)	195, 216, 314, 701
MaeIII	GTNAC	3 cut(s)	209, 709, 784
MalI	GATC	2 cut(s)	426, 1209
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	2 cut(s)	424, 1207
MboII	GAAGA	3 cut(s)	17, 678, 999
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	8 cut(s)	57, 169, 455, 735, 901, 915, 979, 1042
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	411, 1124
MmeI	TCCRAC	3 cut(s)	198, 539, 706
MnlI	CCTC	8 cut(s)	113, 270, 441, 516, 658, 714, 766, 951
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	4 cut(s)	387, 621, 780, 1076
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	4 cut(s)	574, 657, 1107, 1172
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	569, 950
MvaI	CCWGG	4 cut(s)	574, 657, 1107, 1172
MwoI	GCNNNNNNNGC	6 cut(s)	161, 305, 317, 752, 827, 1226
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	424, 1207
NlaIII	CATG	2 cut(s)	779, 1127
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	209, 709
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	569, 950
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
PflMI	CCANNNNNTGG	1 cut(s)	1112
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	7 cut(s)	154, 307, 310, 569, 820, 1228, 1258
PleI	GAGTC	2 cut(s)	410, 1124
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	2 cut(s)	410, 1124
Ppu21I	YACGTR	2 cut(s)	196, 217
PsiI	TTATAA	1 cut(s)	1164
Psp1406I	AACGTT	2 cut(s)	314, 701
Psp6I	CCWGG	4 cut(s)	572, 655, 1105, 1170
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	4 cut(s)	572, 655, 1105, 1170
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	438, 445, 672
PstI	CTGCAG	3 cut(s)	310, 1228, 1261
PstNI	CAGNNNCTG	3 cut(s)	67, 579, 794
RsaI	GTAC	2 cut(s)	188, 348
RsaNI	GTAC	2 cut(s)	187, 347
SaqAI	TTAA	4 cut(s)	387, 621, 780, 1076
SatI	GCNGC	7 cut(s)	153, 306, 309, 568, 819, 1227, 1257
Sau3AI	GATC	2 cut(s)	424, 1207
Sau96I	GGNCC	3 cut(s)	438, 445, 672
SchI	GAGTC	2 cut(s)	411, 1124
ScrFI	CCNGG	4 cut(s)	574, 657, 1107, 1172
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	3 cut(s)	59, 77, 1243
SfcI	CTRYAG	3 cut(s)	306, 1224, 1257
SinI	GGWCC	3 cut(s)	438, 445, 672
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	8 cut(s)	57, 169, 455, 735, 901, 915, 979, 1042
SsiI	CCGC	3 cut(s)	162, 568, 670
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	4 cut(s)	572, 655, 1105, 1170
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	69, 351, 503, 626
TaiI	ACGT	4 cut(s)	198, 219, 317, 704
TasI	AATT	8 cut(s)	57, 169, 455, 735, 901, 915, 979, 1042
TatI	WGTACW	2 cut(s)	186, 346
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
Tru1I	TTAA	4 cut(s)	387, 621, 780, 1076
Tru9I	TTAA	4 cut(s)	387, 621, 780, 1076
TscAI	CASTG	5 cut(s)	34, 271, 440, 631, 712
TseFI	GTSAC	2 cut(s)	209, 709
TseI	GCWGC	6 cut(s)	152, 305, 308, 818, 1226, 1256
Tsp45I	GTSAC	2 cut(s)	209, 709
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	5 cut(s)	34, 271, 440, 631, 712
Van91I	CCANNNNNTGG	1 cut(s)	1112
VpaK11BI	GGWCC	3 cut(s)	438, 445, 672
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.