Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Forward (+)

1632724 .. 1636252

Gene Structure 3529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAAGAGAAACGAGACTTGTTATCCAGTGTAGCAAAGAGTATTACAGCATCACCAATTCAGGAACTCTCCCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGTTTTCCAGACTTCCCTGCACCTTCCCACATCAAAGACGCTGCCATTTCCGCTATCAATTCCGACTTCAATCAGTACAGGCACGTTCAAGGAATATGTGACCACGTGGCAATCATAATGAACCAAATGCACGGATTAGATGTCAACCCTCTTACTGATGTAGCTATTTGTTGTGGCCAAACCGAAGCATTTGCTGCAGCAGCGTTTGCAATAATAGACAAGGGTGATGAAGTTATACTGTTTGACCCTTGTTATGAAACATATGAAGGGTGTATTAAGATGGCTGGGGGAGTCCCTGTATATGTGCCCCTTGATCCACCTTACTGGACCGTGGACCCTAACAAATTCATCAAGTCTTTTTCTGGGAGAACAAAAGCTGTAATACTCAACAGTCCTCACAATCCAACCGGCAAAGTTTTCACCAGAGATGAACTTGAGATTATTGCTGGAGAATGCCACACCAGGAACTGCCTAGCTATCACAGATGAAGTATATGAACATATAACATTTAACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGAGAGAGCGGACCATCATCACATCTTCCTTATCTAAAACGTTTAGTGTCACAGGATGGAGGGTTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCCGCAATCAGAAACATTCATGTTAAAGTTACAGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGAGAAGTCCCCCTGAATACTTTGAATCATTGAGAAGTGATTATGAATCAAGGAGAGACTACATCGTCAATTTACTTGCCAGAATTGGATTCAAGATTCATTTCAAGCCTCAGGGTGCATTCTTTTTATTTGCAGAGCTACCTGAAAATTGCCCGCTTTCTGATGTAGAGTATGTTAGAAAGTTAATACAACAAGCAGGGGTAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGACTCATCTGTGGAGAAACTTTCTCAGGATGGTTATAACTACCAGGATAGATACATCAGGTTTGCTTTCTGTAAAAGTGATCGTACTTTGGCTTCTGCAGCAAAAAGACTCGGGGAGCTTTTGGATGCTGCAGGGTGTCTCAAGCTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

407

Amino Acids

44.89

Weight (kDa)

5.96

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	33 - 352	3.6e-56	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AasI	GACNNNNNNGTC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	1052
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	4 cut(s)	162, 670, 759, 986
AclI	AACGTT	1 cut(s)	701
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	455
AcvI	CACGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	188, 1153
AfiI	CCNNNNNNNGG	1 cut(s)	1052
AgsI	TTSAA	5 cut(s)	181, 200, 857, 925, 937
AjnI	CCWGG	4 cut(s)	572, 655, 1045, 1110
AluBI	AGCT	8 cut(s)	275, 488, 587, 746, 818, 970, 1186, 1213
AluI	AGCT	8 cut(s)	275, 488, 587, 746, 818, 970, 1186, 1213
Alw26I	GTCTC	3 cut(s)	9, 882, 1211
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	2 cut(s)	579, 794
Ama87I	CYCGRG	1 cut(s)	1178
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	7 cut(s)	152, 305, 308, 311, 818, 1166, 1196
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	438, 445, 672
AsuHPI	GGTGA	3 cut(s)	45, 347, 523
AvaI	CYCGRG	1 cut(s)	1178
AvaII	GGWCC	3 cut(s)	438, 445, 672
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	1144, 1176
BbrPI	CACGTG	1 cut(s)	217
BbvI	GCAGC	7 cut(s)	139, 292, 320, 323, 805, 1178, 1183
BccI	CCATC	7 cut(s)	81, 104, 385, 683, 711, 723, 1091
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	4 cut(s)	574, 657, 1047, 1112
BcoDI	GTCTC	3 cut(s)	9, 882, 1211
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	3 cut(s)	306, 1164, 1197
BisI	GCNGC	7 cut(s)	153, 306, 309, 312, 819, 1167, 1197
BlsI	GCNGC	7 cut(s)	154, 307, 310, 313, 820, 1168, 1198
Bme1390I	CCNGG	4 cut(s)	574, 657, 1047, 1112
Bme18I	GGWCC	3 cut(s)	438, 445, 672
BmeT110I	CYCGRG	1 cut(s)	1178
BmgT120I	GGNCC	3 cut(s)	438, 445, 672
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	4 cut(s)	574, 657, 1047, 1112
BmsI	GCATC	3 cut(s)	59, 77, 1183
BpmI	CTGGAG	2 cut(s)	579, 726
BpuEI	CTTGAG	2 cut(s)	566, 1193
BsaAI	YACGTR	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	1052
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	27, 440
Bse21I	CCTNAGG	1 cut(s)	942
BseBI	CCWGG	4 cut(s)	574, 657, 1047, 1112
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	5 cut(s)	722, 734, 1055, 1102, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	1052
BseMII	CTCAG	2 cut(s)	956, 1106
BseNI	ACTGG	2 cut(s)	27, 440
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	7 cut(s)	139, 292, 320, 323, 805, 1178, 1183
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	114, 780
BshFI	GGCC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	1178
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	389, 825
BslI	CCNNNNNNNGG	1 cut(s)	1052
BsmAI	GTCTC	3 cut(s)	9, 882, 1211
BsmFI	GGGAC	2 cut(s)	389, 825
BsmI	GAATGC	2 cut(s)	569, 950
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	1178
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	424, 1147
BspACI	CCGC	4 cut(s)	162, 670, 759, 986
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	955, 1105
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	3 cut(s)	310, 1168, 1201
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	27, 440
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	424, 1147
Bst2UI	CCWGG	4 cut(s)	574, 657, 1047, 1112
Bst4CI	ACNGT	4 cut(s)	351, 442, 503, 626
BstAPI	GCANNNNNTGC	2 cut(s)	305, 317
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	986
BstDEI	CTNAG	2 cut(s)	942, 1092
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	5 cut(s)	722, 734, 1055, 1102, 1198
BstKTI	GATC	2 cut(s)	427, 1150
BstMAI	GTCTC	3 cut(s)	9, 882, 1211
BstMBI	GATC	2 cut(s)	424, 1147
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 305, 311, 317, 752, 827, 1166
BstNI	CCWGG	4 cut(s)	574, 657, 1047, 1112
BstSCI	CCNGG	4 cut(s)	572, 655, 1045, 1110
BstSFI	CTRYAG	3 cut(s)	306, 1164, 1197
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	7 cut(s)	139, 292, 320, 323, 805, 1178, 1183
BstXI	CCANNNNNNTGG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	5 cut(s)	722, 734, 1055, 1102, 1198
BtsIMutI	CAGTG	2 cut(s)	34, 631
Cac8I	GCNNGC	1 cut(s)	986
CaiI	CAGNNNCTG	2 cut(s)	579, 794
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	438, 445, 672
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	187, 1152
CviAII	CATG	2 cut(s)	776, 1064
CviQI	GTAC	2 cut(s)	187, 1152
DdeI	CTNAG	2 cut(s)	942, 1092
DpnI	GATC	2 cut(s)	426, 1149
DpnII	GATC	2 cut(s)	424, 1147
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	438, 445, 672
Eco72I	CACGTG	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	1178
EcoRII	CCWGG	4 cut(s)	572, 655, 1045, 1110
FaeI	CATG	2 cut(s)	779, 1067
FaqI	GGGAC	2 cut(s)	389, 825
FatI	CATG	2 cut(s)	775, 1063
FauI	CCCGC	1 cut(s)	993
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	7 cut(s)	153, 306, 309, 312, 819, 1167, 1197
FokI	GGATG	5 cut(s)	729, 741, 1062, 1109, 1205
Fsp4HI	GCNGC	7 cut(s)	153, 306, 309, 312, 819, 1167, 1197
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	7 cut(s)	153, 306, 309, 312, 819, 1167, 1197
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	579, 726
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	779, 1067
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	8 cut(s)	402, 791, 857, 878, 921, 928, 1070, 1176
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	3 cut(s)	45, 347, 523
Hpy166II	GTNNAC	2 cut(s)	256, 445
Hpy188I	TCNGA	3 cut(s)	175, 767, 994
Hpy188III	TCNNGA	4 cut(s)	62, 119, 925, 1094
Hpy8I	GTNNAC	2 cut(s)	256, 445
HpyAV	CCTTC	3 cut(s)	104, 144, 371
HpyCH4III	ACNGT	4 cut(s)	351, 442, 503, 626
HpyCH4IV	ACGT	3 cut(s)	195, 216, 701
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 305, 311, 317, 752, 827, 1166
HpyF3I	CTNAG	2 cut(s)	942, 1092
HpySE526I	ACGT	3 cut(s)	195, 216, 701
Hsp92II	CATG	2 cut(s)	779, 1067
Kzo9I	GATC	2 cut(s)	424, 1147
LmnI	GCTCC	2 cut(s)	745, 1183
Lsp1109I	GCAGC	7 cut(s)	139, 292, 320, 323, 805, 1178, 1183
LweI	GCATC	3 cut(s)	59, 77, 1183
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	3 cut(s)	195, 216, 701
MaeIII	GTNAC	3 cut(s)	209, 709, 784
MalI	GATC	2 cut(s)	426, 1149
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	2 cut(s)	424, 1147
MboII	GAAGA	2 cut(s)	17, 678
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	3 cut(s)	411, 1064, 1170
MmeI	TCCRAC	3 cut(s)	198, 539, 706
MnlI	CCTC	7 cut(s)	113, 270, 516, 658, 714, 766, 951
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	4 cut(s)	387, 621, 780, 1016
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	4 cut(s)	574, 657, 1047, 1112
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	569, 950
MvaI	CCWGG	4 cut(s)	574, 657, 1047, 1112
MwoI	GCNNNNNNNGC	7 cut(s)	161, 305, 311, 317, 752, 827, 1166
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	424, 1147
NlaIII	CATG	2 cut(s)	779, 1067
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	209, 709
PctI	GAATGC	2 cut(s)	569, 950
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
PflMI	CCANNNNNTGG	1 cut(s)	1052
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	7 cut(s)	154, 307, 310, 313, 820, 1168, 1198
PleI	GAGTC	3 cut(s)	410, 1064, 1170
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	3 cut(s)	410, 1064, 1170
Ppu21I	YACGTR	1 cut(s)	217
PsiI	TTATAA	1 cut(s)	1104
Psp1406I	AACGTT	1 cut(s)	701
Psp6I	CCWGG	4 cut(s)	572, 655, 1045, 1110
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	4 cut(s)	572, 655, 1045, 1110
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	438, 445, 672
PstI	CTGCAG	3 cut(s)	310, 1168, 1201
PstNI	CAGNNNCTG	2 cut(s)	579, 794
RsaI	GTAC	2 cut(s)	188, 1153
RsaNI	GTAC	2 cut(s)	187, 1152
SaqAI	TTAA	4 cut(s)	387, 621, 780, 1016
SatI	GCNGC	7 cut(s)	153, 306, 309, 312, 819, 1167, 1197
Sau3AI	GATC	2 cut(s)	424, 1147
Sau96I	GGNCC	3 cut(s)	438, 445, 672
SchI	GAGTC	3 cut(s)	411, 1064, 1170
ScrFI	CCNGG	4 cut(s)	574, 657, 1047, 1112
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	3 cut(s)	59, 77, 1183
SfcI	CTRYAG	3 cut(s)	306, 1164, 1197
SinI	GGWCC	3 cut(s)	438, 445, 672
SmlI	CTYRAG	2 cut(s)	545, 1208
SmoI	CTYRAG	2 cut(s)	545, 1208
Sse9I	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
SsiI	CCGC	4 cut(s)	162, 670, 759, 986
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	4 cut(s)	572, 655, 1045, 1110
TaaI	ACNGT	4 cut(s)	351, 442, 503, 626
TaiI	ACGT	3 cut(s)	198, 219, 704
TasI	AATT	7 cut(s)	57, 169, 455, 735, 901, 915, 979
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	791, 857, 878, 921, 928
Tru1I	TTAA	4 cut(s)	387, 621, 780, 1016
Tru9I	TTAA	4 cut(s)	387, 621, 780, 1016
TscAI	CASTG	2 cut(s)	34, 631
TseFI	GTSAC	2 cut(s)	209, 709
TseI	GCWGC	7 cut(s)	152, 305, 308, 311, 818, 1166, 1196
Tsp45I	GTSAC	2 cut(s)	209, 709
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	34, 631
Van91I	CCANNNNNTGG	1 cut(s)	1052
VpaK11BI	GGWCC	3 cut(s)	438, 445, 672
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.