Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011569

Physical Location & Seq

Genomic Coordinates Reverse (-)

70273675 .. 70277483

Gene Structure 3809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGGGGGAGTCCCTGTATATGTGCCCCTTGATCCACCTCACTGGACCTTGGACCCTAACAAATTCATCAAGTCCTTTTCTGGGAGAACAAAAGCCGTAATACTCAACAGTCCTCACAATCCAACCGGCAAAGTTTTCACCAAAGATGAACTTGAGATTATTGCTGGAGAATGCCGCACCAGGAACTGCCTAGCTATAACAGATGAAGTATATGAACATATAACATTTAACAGTGAGAAGCATATATCCCTTGCCTCGTTTCCAGGAATGAGAGAGCGGACCATCATCACATCTTCCTTATCTAAAACGTTCTGTGTCACAGGATGGAGGGTTGGATGGGCAATTGCTCCAGCTTTTATTGCCTCTGCAATCAGAAACATTCATGTTAAAGTTACAGATTCTGCACCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGAGAAGTCCTCCTGAATACTTTGAATCATTGAGAAGTGATTATGAATCAAGGAGAGACTACATCGTCAATTTACTTGCCAGAATTGGATTCAAGATTCATTTCAAGCCTCAGGGTGCATTCTTTTTATTTGCAGAGATACCTGAAAATTGCCCACTTTCTGATGTATGCTTGTCTTCTATGTCGTTGCAATGTTATAGAAAAAAAATCAATTCTTTTGTCAGGGTACGTTATTTGCAAGCCTCCATGCTACTTGCATGCTGTACTCATTCTAGTAGTTTAATGATAAGGTTCATGTGTTTTCAGGTAGAGTATGTTAGAAAGCTAATACAACAAGCAGGGGTAGTGGCTGTGCCAGGATGTGGATTTTTTCATGCAGACTCATCTGTGGAGAAACTTTCTCAGGAGGGTTATAACTATCAGGATAGATACATCAGGTTTGCTTTCTGTAAAAGTGATCATACTTTGGCTTCTGCAGCAAAAAGACTTGGGGAGCTTTTGGATGCTGCAGGGTGTCTCAAGCTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

323

Amino Acids

36.22

Weight (kDa)

8.95

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	2 - 227	7.7e-38	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39650 FvH4_5g39650 FvH4_5g39650 FvH4_5g39650
malus_domestica	MD11G1317900.v1.1
prunus_persica	Prupe.8G269100_v2.0.a1
pyrus_communis	pycom11g27710
rosa_chinensis	RchiOBHm_Chr7g0241961
rosa_laevigata	RLG00000000526
rosa_multiflora	Rmu_co8508251.1_g000001 Rmu_sc0003266.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218430
rosa_rugosa	Rorug07G0349100 Rorug07G0349200 Rorug07G0349300.1 Rorug07G0349400
rosa_samantha	Rh7AG503300 Rh7BG474500 Rh7DG488900
rosa_wichuraiana	Rw7G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	2 cut(s)	178, 280
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	2 cut(s)	669, 706
AfiI	CCNNNNNNNGG	2 cut(s)	84, 803
AgsI	TTSAA	3 cut(s)	467, 535, 547
AjnI	CCWGG	3 cut(s)	182, 265, 796
AluBI	AGCT	6 cut(s)	197, 356, 428, 766, 937, 964
AluI	AGCT	6 cut(s)	197, 356, 428, 766, 937, 964
Alw26I	GTCTC	2 cut(s)	492, 962
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	2 cut(s)	189, 404
ApeKI	GCWGC	3 cut(s)	428, 917, 947
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	48, 55, 282
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	3 cut(s)	48, 55, 282
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	415, 929, 934
BccI	CCATC	3 cut(s)	293, 321, 333
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	184, 267, 798
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	2 cut(s)	492, 962
BfaI	CTAG	2 cut(s)	194, 714
BfmI	CTRYAG	2 cut(s)	915, 948
BisI	GCNGC	4 cut(s)	178, 429, 918, 948
BlsI	GCNGC	4 cut(s)	179, 430, 919, 949
Bme1390I	CCNGG	3 cut(s)	184, 267, 798
Bme18I	GGWCC	3 cut(s)	48, 55, 282
BmgT120I	GGNCC	3 cut(s)	48, 55, 282
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	3 cut(s)	184, 267, 798
BmsI	GCATC	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	2 cut(s)	189, 336
BpuEI	CTTGAG	2 cut(s)	176, 944
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 803
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	184, 267, 798
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	4 cut(s)	332, 344, 806, 949
BseLI	CCNNNNNNNGG	2 cut(s)	84, 803
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	566, 857
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	415, 929, 934
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	84, 803
BsmAI	GTCTC	2 cut(s)	492, 962
BsmI	GAATGC	2 cut(s)	179, 560
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	34, 898
BspACI	CCGC	2 cut(s)	178, 280
BspCNI	CTCAG	2 cut(s)	565, 856
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	2 cut(s)	919, 952
BspPI	GGATC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	34, 898
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	184, 267, 798
Bst4CI	ACNGT	2 cut(s)	113, 236
BstC8I	GCNNGC	2 cut(s)	681, 700
BstDEI	CTNAG	2 cut(s)	552, 843
BstF5I	GGATG	4 cut(s)	332, 344, 806, 949
BstKTI	GATC	2 cut(s)	37, 901
BstMAI	GTCTC	2 cut(s)	492, 962
BstMBI	GATC	2 cut(s)	34, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 437, 917
BstNI	CCWGG	3 cut(s)	184, 267, 798
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	3 cut(s)	182, 265, 796
BstSFI	CTRYAG	2 cut(s)	915, 948
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	415, 929, 934
BstV2I	GAAGAC	1 cut(s)	609
BstXI	CCANNNNNNTGG	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	552
BtsCI	GGATG	4 cut(s)	332, 344, 806, 949
BtsIMutI	CAGTG	2 cut(s)	43, 241
Cac8I	GCNNGC	2 cut(s)	681, 700
CaiI	CAGNNNCTG	2 cut(s)	189, 404
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	48, 55, 282
Csp6I	GTAC	2 cut(s)	668, 705
CviAII	CATG	5 cut(s)	386, 688, 699, 736, 815
CviQI	GTAC	2 cut(s)	668, 705
DdeI	CTNAG	2 cut(s)	552, 843
DpnI	GATC	2 cut(s)	36, 900
DpnII	GATC	2 cut(s)	34, 898
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	48, 55, 282
Eco81I	CCTNAGG	1 cut(s)	552
EcoRII	CCWGG	3 cut(s)	182, 265, 796
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	5 cut(s)	389, 691, 702, 739, 818
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	5 cut(s)	385, 687, 698, 735, 814
FbaI	TGATCA	1 cut(s)	898
Fnu4HI	GCNGC	4 cut(s)	178, 429, 918, 948
FokI	GGATG	4 cut(s)	339, 351, 813, 956
Fsp4HI	GCNGC	4 cut(s)	178, 429, 918, 948
FspBI	CTAG	2 cut(s)	194, 714
GluI	GCNGC	4 cut(s)	178, 429, 918, 948
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	189, 336
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	5 cut(s)	389, 691, 702, 739, 818
HinfI	GANTC	7 cut(s)	12, 401, 467, 488, 531, 538, 821
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	377, 604
Hpy188III	TCNNGA	4 cut(s)	455, 535, 845, 863
HpyCH4III	ACNGT	2 cut(s)	113, 236
HpyCH4IV	ACGT	2 cut(s)	311, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 437, 917
HpyF3I	CTNAG	2 cut(s)	552, 843
HpySE526I	ACGT	2 cut(s)	311, 670
Hsp92II	CATG	5 cut(s)	389, 691, 702, 739, 818
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	2 cut(s)	34, 898
LmnI	GCTCC	2 cut(s)	355, 934
Lsp1109I	GCAGC	3 cut(s)	415, 929, 934
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	2 cut(s)	194, 714
MaeII	ACGT	2 cut(s)	311, 670
MaeIII	GTNAC	2 cut(s)	319, 394
MalI	GATC	2 cut(s)	36, 900
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	2 cut(s)	34, 898
MboII	GAAGA	2 cut(s)	288, 609
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	6 cut(s)	65, 345, 511, 525, 589, 652
MlyI	GAGTC	2 cut(s)	21, 815
MmeI	TCCRAC	2 cut(s)	149, 316
MnlI	CCTC	9 cut(s)	51, 126, 268, 324, 376, 462, 561, 694, 841
MseI	TTAA	3 cut(s)	231, 390, 722
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	184, 267, 798
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	2 cut(s)	179, 560
MvaI	CCWGG	3 cut(s)	184, 267, 798
MwoI	GCNNNNNNNGC	3 cut(s)	362, 437, 917
NdeII	GATC	2 cut(s)	34, 898
NlaIII	CATG	5 cut(s)	389, 691, 702, 739, 818
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	702
PaeI	GCATGC	1 cut(s)	702
PctI	GAATGC	2 cut(s)	179, 560
PfeI	GAWTC	5 cut(s)	401, 467, 488, 531, 538
PflMI	CCANNNNNTGG	1 cut(s)	803
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	179, 430, 919, 949
PleI	GAGTC	2 cut(s)	20, 815
PpsI	GAGTC	2 cut(s)	20, 815
PsiI	TTATAA	1 cut(s)	855
Psp1406I	AACGTT	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	182, 265, 796
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	182, 265, 796
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	48, 55, 282
PstI	CTGCAG	2 cut(s)	919, 952
PstNI	CAGNNNCTG	2 cut(s)	189, 404
RsaI	GTAC	2 cut(s)	669, 706
RsaNI	GTAC	2 cut(s)	668, 705
SaqAI	TTAA	3 cut(s)	231, 390, 722
SatI	GCNGC	4 cut(s)	178, 429, 918, 948
Sau3AI	GATC	2 cut(s)	34, 898
Sau96I	GGNCC	3 cut(s)	48, 55, 282
SchI	GAGTC	2 cut(s)	21, 815
ScrFI	CCNGG	3 cut(s)	184, 267, 798
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	934
SfcI	CTRYAG	2 cut(s)	915, 948
SinI	GGWCC	3 cut(s)	48, 55, 282
SmlI	CTYRAG	2 cut(s)	155, 959
SmoI	CTYRAG	2 cut(s)	155, 959
SphI	GCATGC	1 cut(s)	702
Sse9I	AATT	6 cut(s)	65, 345, 511, 525, 589, 652
SsiI	CCGC	2 cut(s)	178, 280
SspMI	CTAG	2 cut(s)	194, 714
StyD4I	CCNGG	3 cut(s)	182, 265, 796
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	113, 236
TaiI	ACGT	2 cut(s)	314, 673
TasI	AATT	6 cut(s)	65, 345, 511, 525, 589, 652
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	5 cut(s)	401, 467, 488, 531, 538
Tru1I	TTAA	3 cut(s)	231, 390, 722
Tru9I	TTAA	3 cut(s)	231, 390, 722
TscAI	CASTG	2 cut(s)	50, 241
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	428, 917, 947
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	9 cut(s)	58, 165, 222, 231, 374, 501, 530, 724, 803
TspRI	CASTG	2 cut(s)	50, 241
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	3 cut(s)	48, 55, 282
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	702
XspI	CTAG	2 cut(s)	194, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.