Prupe.8G269100_v2.0.a1

DegT/DnrJ/EryC1/StrS aminotransferase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
22390513 .. 22392844
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G269100.1

Sequence Viewer

Length: 1212 bp
ATGGAGGATAAGTTATCGAGCGTGGCAAAGAGTTTTGCACCATCGCCCATTCAGGAACTATCCCATCTTGCCCAGAGATGCAACGCCATCAACCTCGCCGAAGGCTTTCCAGACTTCCCTGCACCTTCCCATATCAAATTCGCTGCCATTTCCGCTATTCATTCCGACTTCAATCAATACAGGCATGTACCTGGAATATGTGACCTCCTGGCAAACATAATGAAGCAAATCCATGGATTGAATGTCAACCCTCTTACTGATATAGCTATTTGTTGTGGCCAATCTGAGGCCTTCGCGGCAGCTGCCTTTGCAATAATAGACAAGGGTGATGAAGTTGTACTGTTTGACCCTTGCTATGAAACATATGAAGGATGCATTAAGATGGCTGGGGGAGTCCCAGTATACATCGCTCTCGACCCACCTCAGTGGACCTTGGACCCTAACAAATTCATCAACTCTTTCACTGGGAGAACAAAAGCTGTAGTACTCAACAGTCCTCACAACCCAACTGGCAAAGTATTCACTAAAGATGAACTTGAGATTATTGCTGGAGAATGCCGCACCAGGAATTGCCTAGCTATAACAGATGAAGTATATGAGCATATAACCTTCAACAGTGAGAAACATATATCCCTTGCATCATTTCCAGGAATGCAAGAGCGGACTATTATCACGTCTTCCTTATCTAAAACGTTCAGTGTAACAGGTTGGAGGGTCGGATGGGCAATTGCTCCAGCTTTCATTGCATCTGCAATCAGAAACATTCATACTAAACTTACAGATTCTGCTCCAGCACCTTTCCAAGAAGCTGCCTTGACTGCTTTGGGAAGCCCCCCTGAATACTTTGAATCATTGAGAAGTGATTATGAATCAAGACGAGACTACATTGTCAATTTGCTAACTAGAGTTGGCTTTAAGATTCAGTTCAAGCCTCAGGGTGCACTCTTTTTATTTGCAGAGCTACCTGAAAATTGCAAACTTTCTGATGTAGATTATGTTAAAATGTTAATACAGACTGCAGGGGTTGTGGCTGTGCCAGGATGTGGATTTTTTCATACACATTTGTCTCGGGAGAAATTTTCTCTGGGAGGTTACAGCTATCAGGAGAGATACATTAGGTTTGCTTTCTGTAAAAGTGATCAGACTTTGGCTTCTGCTGCAAAAAGACTTGGAGAGCTTATTGATGCTACAGGGTGTCTCAATCCGCAATGA

Protein Analysis

404

Amino Acids

44.35

Weight (kDa)

6.01

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 1043
AccBSI CCGCTC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 402
AccII CGCG 1 cut(s) 296
AciI CCGC 5 cut(s) 153, 296, 559, 661, 1205
AclI AACGTT 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 3 cut(s) 137, 446, 1076
AfaI GTAC 3 cut(s) 189, 339, 486
AfiI CCNNNNNNNGG 2 cut(s) 286, 1043
AgsI TTSAA 5 cut(s) 172, 241, 613, 848, 928
AjiI CACGTC 1 cut(s) 675
AjnI CCWGG 5 cut(s) 190, 207, 563, 646, 1036
AleI CACNNNNGTG 1 cut(s) 424
AluBI AGCT 9 cut(s) 266, 302, 479, 578, 737, 809, 961, 1098, 1177
AluI AGCT 9 cut(s) 266, 302, 479, 578, 737, 809, 961, 1098, 1177
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 3 cut(s) 873, 1071, 1202
Alw44I GTGCAC 1 cut(s) 939
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 2 cut(s) 277, 288
ApaLI GTGCAC 1 cut(s) 939
ApeKI GCWGC 5 cut(s) 143, 299, 302, 809, 1157
ApoI RAATTY 3 cut(s) 137, 446, 1076
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 429, 436
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 2 cut(s) 429, 436
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 5 cut(s) 130, 289, 311, 796, 1144
BccI CCATC 5 cut(s) 49, 72, 95, 376, 714
BciT130I CCWGG 5 cut(s) 192, 209, 565, 648, 1038
BclI TGATCA 1 cut(s) 1138
BcoDI GTCTC 3 cut(s) 873, 1071, 1202
BfaI CTAG 2 cut(s) 575, 903
BfmI CTRYAG 3 cut(s) 480, 1017, 1188
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 7 cut(s) 144, 297, 300, 303, 559, 810, 1158
BlsI GCNGC 7 cut(s) 145, 298, 301, 304, 560, 811, 1159
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 5 cut(s) 192, 209, 565, 648, 1038
Bme18I GGWCC 2 cut(s) 429, 436
BmeT110I CYCGRG 1 cut(s) 1068
BmgBI CACGTC 1 cut(s) 675
BmgT120I GGNCC 2 cut(s) 429, 436
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 5 cut(s) 192, 209, 565, 648, 1038
BmrI ACTGGG 2 cut(s) 392, 474
BmsI GCATC 5 cut(s) 68, 362, 647, 755, 1174
BmuI ACTGGG 2 cut(s) 392, 474
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 3 cut(s) 570, 717, 774
BpuEI CTTGAG 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 232, 432
BsaXI ACNNNNNCTCC 3 cut(s) 26, 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 1043
Bse1I ACTGG 3 cut(s) 398, 469, 514
Bse21I CCTNAGG 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 5 cut(s) 192, 209, 565, 648, 1038
BseDI CCNNGG 2 cut(s) 232, 432
BseGI GGATG 3 cut(s) 377, 725, 1046
BseLI CCNNNNNNNGG 2 cut(s) 286, 1043
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 3 cut(s) 276, 437, 947
BseNI ACTGG 3 cut(s) 398, 469, 514
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 5 cut(s) 130, 289, 311, 796, 1144
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 279, 290
BsiHKAI GWGCWC 1 cut(s) 943
BsiHKCI CYCGRG 1 cut(s) 1068
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 286, 1043
BsmAI GTCTC 3 cut(s) 873, 1071, 1202
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 2 cut(s) 560, 657
BsnI GGCC 2 cut(s) 279, 290
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 1 cut(s) 1138
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 5 cut(s) 153, 296, 559, 661, 1205
BspANI GGCC 2 cut(s) 279, 290
BspCNI CTCAG 3 cut(s) 277, 436, 946
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 1021
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 3 cut(s) 398, 469, 514
BssECI CCNNGG 2 cut(s) 232, 432
BssMI GATC 1 cut(s) 1138
BssNAI GTATAC 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 232, 432
Bst1107I GTATAC 1 cut(s) 403
Bst2UI CCWGG 5 cut(s) 192, 209, 565, 648, 1038
Bst4CI ACNGT 3 cut(s) 342, 494, 617
BstDEI CTNAG 3 cut(s) 285, 423, 933
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 3 cut(s) 377, 725, 1046
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 1 cut(s) 1141
BstMAI GTCTC 3 cut(s) 873, 1071, 1202
BstMBI GATC 1 cut(s) 1138
BstMWI GCNNNNNNNGC 7 cut(s) 152, 296, 302, 308, 743, 818, 1157
BstNI CCWGG 5 cut(s) 192, 209, 565, 648, 1038
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 5 cut(s) 190, 207, 563, 646, 1036
BstSFI CTRYAG 3 cut(s) 480, 1017, 1188
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 5 cut(s) 130, 289, 311, 796, 1144
BstV2I GAAGAC 1 cut(s) 669
BstXI CCANNNNNNTGG 1 cut(s) 426
BstZ17I GTATAC 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 2 cut(s) 279, 290
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 2 cut(s) 27, 391
BtrI CACGTC 1 cut(s) 675
BtsCI GGATG 3 cut(s) 377, 725, 1046
BtsIMutI CAGTG 4 cut(s) 431, 462, 622, 703
CaiI CAGNNNCTG 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 429, 436
Csp6I GTAC 3 cut(s) 188, 338, 485
CviAII CATG 2 cut(s) 185, 233
CviQI GTAC 3 cut(s) 188, 338, 485
DdeI CTNAG 3 cut(s) 285, 423, 933
DpnI GATC 1 cut(s) 1140
DpnII GATC 1 cut(s) 1138
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 232, 432
Eco147I AGGCCT 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 429, 436
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 1068
EcoRII CCWGG 5 cut(s) 190, 207, 563, 646, 1036
EcoT14I CCWWGG 2 cut(s) 232, 432
EcoT22I ATGCAT 1 cut(s) 377
ErhI CCWWGG 2 cut(s) 232, 432
FaeI CATG 2 cut(s) 188, 236
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 184, 232
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 1138
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 7 cut(s) 144, 297, 300, 303, 559, 810, 1158
FokI GGATG 3 cut(s) 384, 732, 1053
Fsp4HI GCNGC 7 cut(s) 144, 297, 300, 303, 559, 810, 1158
FspBI CTAG 2 cut(s) 575, 903
GluI GCNGC 7 cut(s) 144, 297, 300, 303, 559, 810, 1158
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 3 cut(s) 570, 717, 774
HaeIII GGCC 2 cut(s) 279, 290
Hin1II CATG 2 cut(s) 188, 236
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 5 cut(s) 393, 782, 848, 869, 919
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 4 cut(s) 247, 403, 429, 941
Hpy188I TCNGA 6 cut(s) 166, 286, 719, 758, 985, 1143
Hpy188III TCNNGA 6 cut(s) 53, 110, 413, 873, 1070, 1103
Hpy8I GTNNAC 4 cut(s) 247, 403, 429, 941
HpyAV CCTTC 5 cut(s) 95, 135, 301, 362, 619
HpyCH4III ACNGT 3 cut(s) 342, 494, 617
HpyCH4IV ACGT 2 cut(s) 674, 692
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 296, 302, 308, 743, 818, 1157
HpyF3I CTNAG 3 cut(s) 285, 423, 933
HpySE526I ACGT 2 cut(s) 674, 692
Hsp92II CATG 2 cut(s) 188, 236
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 1 cut(s) 1138
LmnI GCTCC 2 cut(s) 736, 793
Lsp1109I GCAGC 5 cut(s) 130, 289, 311, 796, 1144
LweI GCATC 5 cut(s) 68, 362, 647, 755, 1174
MaeI CTAG 2 cut(s) 575, 903
MaeII ACGT 2 cut(s) 674, 692
MaeIII GTNAC 3 cut(s) 200, 700, 1091
MalI GATC 1 cut(s) 1140
MbiI CCGCTC 1 cut(s) 661
MboI GATC 1 cut(s) 1138
MboII GAAGA 1 cut(s) 669
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 943
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 7 cut(s) 137, 446, 568, 726, 892, 970, 1076
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 3 cut(s) 189, 689, 697
MnlI CCTC 9 cut(s) 104, 215, 261, 280, 432, 507, 705, 942, 1082
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 279
MseI TTAA 4 cut(s) 378, 915, 999, 1007
MslI CAYNNNNRTG 2 cut(s) 380, 424
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 5 cut(s) 192, 209, 565, 648, 1038
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 2 cut(s) 560, 657
MvaI CCWGG 5 cut(s) 192, 209, 565, 648, 1038
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 7 cut(s) 152, 296, 302, 308, 743, 818, 1157
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 364
NdeII GATC 1 cut(s) 1138
NlaIII CATG 2 cut(s) 188, 236
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 424
PceI AGGCCT 1 cut(s) 290
PctI GAATGC 2 cut(s) 560, 657
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 782, 848, 869, 919
PflMI CCANNNNNTGG 1 cut(s) 1043
PfoI TCCNGGA 1 cut(s) 646
PkrI GCNGC 7 cut(s) 145, 298, 301, 304, 560, 811, 1159
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp1406I AACGTT 1 cut(s) 692
Psp6I CCWGG 5 cut(s) 190, 207, 563, 646, 1036
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 5 cut(s) 190, 207, 563, 646, 1036
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 2 cut(s) 429, 436
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 3 cut(s) 189, 339, 486
RsaNI GTAC 3 cut(s) 188, 338, 485
RseI CAYNNNNRTG 2 cut(s) 380, 424
SaqAI TTAA 4 cut(s) 378, 915, 999, 1007
SatI GCNGC 7 cut(s) 144, 297, 300, 303, 559, 810, 1158
Sau3AI GATC 1 cut(s) 1138
Sau96I GGNCC 2 cut(s) 429, 436
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 5 cut(s) 192, 209, 565, 648, 1038
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 5 cut(s) 68, 362, 647, 755, 1174
SfcI CTRYAG 3 cut(s) 480, 1017, 1188
SinI GGWCC 2 cut(s) 429, 436
SmiMI CAYNNNNRTG 2 cut(s) 380, 424
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 7 cut(s) 137, 446, 568, 726, 892, 970, 1076
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 5 cut(s) 153, 296, 559, 661, 1205
SspMI CTAG 2 cut(s) 575, 903
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 5 cut(s) 190, 207, 563, 646, 1036
StyI CCWWGG 2 cut(s) 232, 432
TaaI ACNGT 3 cut(s) 342, 494, 617
TaiI ACGT 2 cut(s) 677, 695
TaqI TCGA 2 cut(s) 17, 414
TasI AATT 7 cut(s) 137, 446, 568, 726, 892, 970, 1076
TatI WGTACW 2 cut(s) 337, 484
TauI GCSGC 2 cut(s) 299, 561
TfiI GAWTC 4 cut(s) 782, 848, 869, 919
Tru1I TTAA 4 cut(s) 378, 915, 999, 1007
Tru9I TTAA 4 cut(s) 378, 915, 999, 1007
TscAI CASTG 4 cut(s) 431, 469, 622, 703
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 5 cut(s) 143, 299, 302, 809, 1157
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 4 cut(s) 431, 469, 622, 703
Van91I CCANNNNNTGG 1 cut(s) 1043
VneI GTGCAC 1 cut(s) 939
VpaK11BI GGWCC 2 cut(s) 429, 436
XapI RAATTY 3 cut(s) 137, 446, 1076
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 575, 903
ZrmI AGTACT 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.